11-64880362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880362
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880362
    reference: chr 11
allele count: 1
allele frequency: 6.669334400426837e-5
allele num: 14994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.496+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-601C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.217+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+179C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.964+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533646
  gene symbol: TM7SF2
  hgvsc: ENST00000533646.1:n.366-72C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-45+179C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+179C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.304+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*17C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.152C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.217+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.161+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.473C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.123+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.304+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.304+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.249+179C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.304+25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.249+179C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

11-64880363-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880363
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880363
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 14990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.153T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.123+26T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-45+180T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.217+26T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.161+26T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.304+26T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.217+26T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+180T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+180T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.304+26T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.304+26T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.217+26T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533646
  gene symbol: TM7SF2
  hgvsc: ENST00000533646.1:n.366-71T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*18T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.474T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.964+26T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-600T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.249+180T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.249+180T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.496+26T>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.304+26T>A
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS

11-64880365-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880365
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880365
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 14932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.304+28G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+182G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533646
  gene symbol: TM7SF2
  hgvsc: ENST00000533646.1:n.366-69G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.249+182G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-45+182G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.304+28G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.249+182G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.217+28G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+182G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.155G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+28G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.123+28G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.964+28G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.217+28G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.476G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-598G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.217+28G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.304+28G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.304+28G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.496+28G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.*20G>A
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-64880373-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880373
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880373
    reference: chr 11
allele count: 1
allele frequency: 6.746727836999056e-5
allele num: 14822
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.304+36C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.496+36C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+36C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.304+36C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.163C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-590C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.249+190C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*21+7C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.217+36C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.249+190C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.161+36C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+190C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.304+36C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533646
  gene symbol: TM7SF2
  hgvsc: ENST00000533646.1:n.366-61C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.484C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+190C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-45+190C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.964+36C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.304+36C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.123+36C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.217+36C>A
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.*21+7C>A
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

11-64880374-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880374
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880374
    reference: chr 11
allele count: 1
allele frequency: 6.75310642895732e-5
allele num: 14808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533646
  gene symbol: TM7SF2
  hgvsc: ENST00000533646.1:n.366-60G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-45+191G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*21+8G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.304+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-589G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.123+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.164G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.304+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.161+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.485G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.249+191G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.964+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.217+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.217+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+191G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.304+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.217+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.304+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.496+37G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.249+191G>T
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.*21+8G>T
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

11-64880377-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880377
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880377
    reference: chr 11
allele count: 38
allele frequency: 2.573479615332521e-3
allele num: 14766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.304+40C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.217+40C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.964+40C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.161+40C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.167C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+40C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.217+40C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533646
  gene symbol: TM7SF2
  hgvsc: ENST00000533646.1:n.366-57C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.123+40C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-586C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+194C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.496+40C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.488C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.249+194C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.304+40C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-45+194C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*21+11C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.249+194C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+194C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.304+40C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.217+40C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

11-64880644-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880644
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880644
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 34804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.124-48G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.218-48G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+307G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.305-48G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+461G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.434G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.304+307G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.217+307G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.755G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.305-48G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-197G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+461G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.218-48G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-197G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-319G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-44-48G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.305-48G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.497-48G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.250-48G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*22-48G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.965-48G>C
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

11-64880645-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880645
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880645
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 34996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-196G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.124-47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.305-47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+308G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.304+308G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-318G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.217+308G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.756G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-44-47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.435G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.965-47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-196G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.305-47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*22-47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.497-47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.250-47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+462G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+462G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.305-47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.218-47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.218-47G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD

11-64880653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880653
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880653
    reference: chr 11
allele count: 1
allele frequency: 2.800492886748068e-5
allele num: 35708
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.305-39G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.218-39G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-44-39G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.124-39G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-188G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-310G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.497-39G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.764G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+316G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+470G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.305-39G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*22-39G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.443G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+470G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-310G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-188G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.218-39G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.965-39G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-310G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.250-39G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.305-39G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum

11-64880656-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880656
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880656
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 35988
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+319G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.497-36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*22-36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-307G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.250-36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.218-36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-307G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.305-36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.965-36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.446G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.124-36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.767G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-307G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-185G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-185G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+473G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.218-36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.305-36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-44-36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+473G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.305-36G>T
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

11-64880658-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880658
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880658
    reference: chr 11
allele count: 1
allele frequency: 2.739425816348893e-5
allele num: 36504
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*22-34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-305G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.305-34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-44-34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.124-34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-183G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.305-34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.305-34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.497-34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.250-34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.218-34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+475G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.448G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.769G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+475G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-305G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.218-34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-183G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+321G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-305G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.965-34G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

11-64880668-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880668
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880668
    reference: chr 11
allele count: 2
allele frequency: 4.586104104563174e-5
allele num: 43610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.458G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-173G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-295G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.218-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-295G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*22-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.779G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-295G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-173G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.965-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.305-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.124-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.305-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+485G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.218-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.497-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.250-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.305-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+331G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-44-24G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+485G>T
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

11-64880669-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880669
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880669
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 44410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*22-23G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-294G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.305-23G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.218-23G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.124-23G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-172G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-294G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.459G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.780G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-44-23G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.218-23G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+486G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.965-23G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.305-23G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-294G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+332G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.250-23G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.305-23G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-172G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+486G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.497-23G>T
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-64880674-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880674
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880672
    reference: chr 11
allele count: 1
allele frequency: 1.992984693877551e-5
allele num: 50176
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.218-15_218-14delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.467_468delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-164_162-163delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+494_249+495delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.305-15_305-14delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-44-15_-44-14delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+340_304+341delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.124-15_124-14delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-286_305-285delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.305-15_305-14delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.788_789delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.305-15_305-14delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*22-15_*22-14delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.497-15_497-14delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+494_393+495delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-164_250-163delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-286_53-285delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-286_218-285delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.250-15_250-14delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.218-15_218-14delTG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.965-15_965-14delTG
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: CTG
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

11-64880675-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880675
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880675
    reference: chr 11
allele count: 1
allele frequency: 1.939412745820566e-5
allele num: 51562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.218-17T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.305-17T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.218-17T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.786T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-166T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.250-17T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-44-17T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-166T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.465T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.124-17T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-288T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-288T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*22-17T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-288T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+492T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.305-17T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+338T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+492T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.965-17T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.305-17T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.497-17T>C
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

http://identifiers.org/exac.variant/11-64880698-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880698
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880698
    reference: chr 11
allele count: 2
allele frequency: 2.42306760358614e-5
allele num: 82540
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.224A>C
  hgvsp: ENSP00000433325.1:p.Gln75Pro
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-265A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+515A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-143A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.13A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.311A>C
  hgvsp: ENSP00000279263.7:p.Gln104Pro
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-38A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+515A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-265A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.130A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.311A>C
  hgvsp: ENSP00000433275.1:p.Gln104Pro
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.256A>C
  hgvsp: ENST00000529601.1:c.256A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.224A>C
  hgvsp: ENSP00000435972.1:p.Gln75Pro
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.809A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.503A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*28A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-143A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.311A>C
  hgvsp: ENSP00000329520.6:p.Gln104Pro
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-265A>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+361A>C
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln104Pro
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

11-64880706-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880706
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880706
    reference: chr 11
allele count: 4
allele frequency: 4.303388918773534e-5
allele num: 92950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*36G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.21G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-30G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.511G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.496G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.319G>T
  hgvsp: ENSP00000433275.1:p.Val107Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+523G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.264G>T
  hgvsp: ENSP00000435458.1:p.Trp88Cys
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.138G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-135G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.232G>T
  hgvsp: ENSP00000435972.1:p.Val78Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+369G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.319G>T
  hgvsp: ENSP00000279263.7:p.Val107Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+523G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-257G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.232G>T
  hgvsp: ENSP00000433325.1:p.Val78Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.979G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-257G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-257G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.319G>T
  hgvsp: ENSP00000329520.6:p.Val107Leu
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val107Leu
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

11-64880714-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880714
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880714
    reference: chr 11
allele count: 1
allele frequency: 9.8173964264677e-6
allele num: 101860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-249A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+531A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.519A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.240A>G
  hgvsp: ENST00000524986.1:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-22A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.29A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.240A>G
  hgvsp: ENST00000525385.1:c.240A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.825A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+377A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+531A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*2A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-127A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.327A>G
  hgvsp: ENST00000279263.7:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.987A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*44A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-249A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.327A>G
  hgvsp: ENST00000529414.1:c.327A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-249A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.146A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-127A>G
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr109Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

11-64880715-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880715
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880715
    reference: chr 11
allele count: 1
allele frequency: 9.75800156128025e-6
allele num: 102480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.505G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.30G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-21G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.520G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-248G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.328G>A
  hgvsp: ENSP00000329520.6:p.Ala110Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.147G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.241G>A
  hgvsp: ENSP00000433325.1:p.Ala81Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-126G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.328G>A
  hgvsp: ENSP00000433275.1:p.Ala110Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.241G>A
  hgvsp: ENSP00000435972.1:p.Ala81Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+532G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.988G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.328G>A
  hgvsp: ENSP00000279263.7:p.Ala110Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+532G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-126G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*45G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.826G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-248G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala110Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum

11-64880723-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880723
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880723
    reference: chr 11
allele count: 3
allele frequency: 2.78344776396363e-5
allele num: 107780
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*53G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.513G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-240G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.249G>T
  hgvsp: ENSP00000433325.1:p.Leu83Phe
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.528G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+540G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.38G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-240G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.834G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.336G>T
  hgvsp: ENSP00000279263.7:p.Leu112Phe
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*11G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.155G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.336G>T
  hgvsp: ENSP00000329520.6:p.Leu112Phe
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-13G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-118G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.996G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.249G>T
  hgvsp: ENSP00000435972.1:p.Leu83Phe
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.336G>T
  hgvsp: ENSP00000433275.1:p.Leu112Phe
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+540G>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+386G>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu112Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

11-64880725-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880725
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880725
    reference: chr 11
allele count: 1
allele frequency: 9.219988936013278e-6
allele num: 108460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-238T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.338T>G
  hgvsp: ENSP00000279263.7:p.Val113Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.251T>G
  hgvsp: ENSP00000435972.1:p.Val84Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+542T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*13T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-238T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.251T>G
  hgvsp: ENSP00000433325.1:p.Val84Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.515T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.338T>G
  hgvsp: ENSP00000433275.1:p.Val113Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.836T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+542T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-238T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.338T>G
  hgvsp: ENSP00000329520.6:p.Val113Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.40T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-116T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.998T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-11T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-116T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.157T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.530T>G
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val113Gly
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

11-64880728-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880728
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880728
    reference: chr 11
allele count: 2
allele frequency: 1.825817053131276e-5
allele num: 109540
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.341G>C
  hgvsp: ENSP00000329520.6:p.Gly114Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*58G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-235G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-235G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.160G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*16G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-235G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-113G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.839G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.341G>C
  hgvsp: ENSP00000433275.1:p.Gly114Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+545G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+391G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.254G>C
  hgvsp: ENSP00000433325.1:p.Gly85Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-8G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.341G>C
  hgvsp: ENSP00000279263.7:p.Gly114Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.254G>C
  hgvsp: ENSP00000435972.1:p.Gly85Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.533G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1001G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+545G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.518G>C
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly114Ala
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

11-64880732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880732
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880732
    reference: chr 11
allele count: 1
allele frequency: 8.99571803821381e-6
allele num: 111164
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+395G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-4G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1005G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.843G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.47G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.345G>A
  hgvsp: ENST00000529414.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-231G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.164G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-231G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-109G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*62G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-231G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.537G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.345G>A
  hgvsp: ENST00000279263.7:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.345G>A
  hgvsp: ENST00000345348.5:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.258G>A
  hgvsp: ENST00000524986.1:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.258G>A
  hgvsp: ENST00000525385.1:c.258G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.522G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+549G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*20G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu115Leu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

11-64880734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880734
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880734
    reference: chr 11
allele count: 1
allele frequency: 8.949186518945427e-6
allele num: 111742
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.49G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-229G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.539G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.347G>A
  hgvsp: ENSP00000329520.6:p.Gly116Glu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.166G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-107G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.260G>A
  hgvsp: ENSP00000433325.1:p.Gly87Glu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.845G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.260G>A
  hgvsp: ENSP00000435972.1:p.Gly87Glu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*22G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+397G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.-2G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1007G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.347G>A
  hgvsp: ENSP00000279263.7:p.Gly116Glu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.347G>A
  hgvsp: ENSP00000433275.1:p.Gly116Glu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+551G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+551G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-229G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.524G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-107G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly116Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

11-64880738-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880738
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880738
    reference: chr 11
allele count: 1
allele frequency: 8.873114463176575e-6
allele num: 112700
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+401G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.264G>A
  hgvsp: ENSP00000433325.1:p.Met88Ile
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.351G>A
  hgvsp: ENSP00000433275.1:p.Met117Ile
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+555G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+555G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.849G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*26G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.351G>A
  hgvsp: ENSP00000279263.7:p.Met117Ile
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1011G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.528G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.3G>A
  hgvsp: ENSP00000441215.1:p.Met1?
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.264G>A
  hgvsp: ENSP00000435972.1:p.Met88Ile
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.351G>A
  hgvsp: ENSP00000329520.6:p.Met117Ile
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-225G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.543G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-225G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-103G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-103G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.170G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.53G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

11-64880743-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880743
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880743
    reference: chr 11
allele count: 5088
allele frequency: 4.460575456314765e-2
allele num: 114066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.356C>T
  hgvsp: ENSP00000329520.6:p.Ala119Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.548C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.854C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+560C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+560C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.269C>T
  hgvsp: ENSP00000435972.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+406C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.356C>T
  hgvsp: ENSP00000279263.7:p.Ala119Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.8C>T
  hgvsp: ENSP00000441215.1:p.Ala3Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.269C>T
  hgvsp: ENSP00000433325.1:p.Ala90Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1016C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*31C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-220C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*73C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-220C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.356C>T
  hgvsp: ENSP00000433275.1:p.Ala119Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-220C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.533C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.175C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.58C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala119Val
num of homozygotes: 152
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

11-64880744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880744
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880744
    reference: chr 11
allele count: 2
allele frequency: 1.741432153803288e-5
allele num: 114848
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.357G>A
  hgvsp: ENST00000345348.5:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.9G>A
  hgvsp: ENST00000540748.1:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-97G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.357G>A
  hgvsp: ENST00000529414.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-97G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-219G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+561G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*32G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.534G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1017G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.357G>A
  hgvsp: ENST00000279263.7:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.549G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.270G>A
  hgvsp: ENST00000524986.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.855G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*74G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-219G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.59G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.270G>A
  hgvsp: ENST00000525385.1:c.270G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-219G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+561G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala119Ala
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

11-64880758-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880758
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880758
    reference: chr 11
allele count: 1
allele frequency: 8.486947075398038e-6
allele num: 117828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.371G>A
  hgvsp: ENSP00000433275.1:p.Gly124Glu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.371G>A
  hgvsp: ENSP00000329520.6:p.Gly124Glu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+575G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*88G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-205G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.23G>A
  hgvsp: ENSP00000441215.1:p.Gly8Glu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+421G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.548G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*46G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-205G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.563G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.284G>A
  hgvsp: ENSP00000435972.1:p.Gly95Glu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.73G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.371G>A
  hgvsp: ENSP00000279263.7:p.Gly124Glu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.190G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-83G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-205G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-83G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1031G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+575G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly124Glu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

11-64880760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880760
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880760
    reference: chr 11
allele count: 1
allele frequency: 8.471704506946798e-6
allele num: 118040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.871G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.286G>A
  hgvsp: ENSP00000435972.1:p.Ala96Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.286G>A
  hgvsp: ENSP00000433325.1:p.Ala96Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.75G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1033G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+423G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+577G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-203G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-203G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.373G>A
  hgvsp: ENSP00000279263.7:p.Ala125Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*90G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.373G>A
  hgvsp: ENSP00000433275.1:p.Ala125Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.192G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.25G>A
  hgvsp: ENSP00000441215.1:p.Ala9Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.373G>A
  hgvsp: ENSP00000329520.6:p.Ala125Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.565G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-81G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-203G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-81G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*48G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala125Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

11-64880761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880761
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880761
    reference: chr 11
allele count: 1
allele frequency: 8.463960456376747e-6
allele num: 118148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-80C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.26C>T
  hgvsp: ENSP00000441215.1:p.Ala9Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.872C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.374C>T
  hgvsp: ENSP00000279263.7:p.Ala125Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.374C>T
  hgvsp: ENSP00000433275.1:p.Ala125Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.287C>T
  hgvsp: ENSP00000435972.1:p.Ala96Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.287C>T
  hgvsp: ENSP00000433325.1:p.Ala96Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.374C>T
  hgvsp: ENSP00000329520.6:p.Ala125Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-80C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+578C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+424C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.566C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*49C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.551C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*91C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1034C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-202C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+578C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-202C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.76C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala125Val
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

11-64880765-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880765
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880765
    reference: chr 11
allele count: 86
allele frequency: 7.237229655810822e-4
allele num: 118830
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.197C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.378C>G
  hgvsp: ENST00000529414.1:c.378C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.378C>G
  hgvsp: ENST00000279263.7:c.378C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-76C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.876C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-198C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.555C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*95C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.30C>G
  hgvsp: ENST00000540748.1:c.30C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-198C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*53C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.291C>G
  hgvsp: ENST00000524986.1:c.291C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+428C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.378C>G
  hgvsp: ENST00000345348.5:c.378C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-198C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.570C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.291C>G
  hgvsp: ENST00000525385.1:c.291C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+582C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+582C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1038C>G
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu126Leu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

11-64880765-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880765
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880765
    reference: chr 11
allele count: 1
allele frequency: 8.415383320710258e-6
allele num: 118830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.291C>T
  hgvsp: ENST00000525385.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*53C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.80C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+582C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-76C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-198C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*95C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+428C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.378C>T
  hgvsp: ENST00000279263.7:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.291C>T
  hgvsp: ENST00000524986.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.555C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+582C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-76C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.378C>T
  hgvsp: ENST00000345348.5:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.378C>T
  hgvsp: ENST00000529414.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.30C>T
  hgvsp: ENST00000540748.1:c.30C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.197C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.570C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-198C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-198C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu126Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

11-64880767-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880767
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880767
    reference: chr 11
allele count: 11
allele frequency: 9.241523002990893e-5
allele num: 119028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.557C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.380C>T
  hgvsp: ENSP00000433275.1:p.Pro127Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.380C>T
  hgvsp: ENSP00000329520.6:p.Pro127Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.199C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.293C>T
  hgvsp: ENSP00000435972.1:p.Pro98Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.32C>T
  hgvsp: ENSP00000441215.1:p.Pro11Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.293C>T
  hgvsp: ENSP00000433325.1:p.Pro98Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-196C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.878C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.82C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1040C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+430C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.380C>T
  hgvsp: ENSP00000279263.7:p.Pro127Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*55C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-196C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-74C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+584C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-196C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*97C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.572C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro127Leu
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum

11-64880777-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880777
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880777
    reference: chr 11
allele count: 1
allele frequency: 8.346966712296751e-6
allele num: 119804
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.303C>G
  hgvsp: ENST00000524986.1:c.303C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.209C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.390C>G
  hgvsp: ENST00000345348.5:c.390C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.390C>G
  hgvsp: ENST00000279263.7:c.390C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.92C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+594C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.303C>G
  hgvsp: ENST00000525385.1:c.303C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1050C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-186C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.567C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-64C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*65C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.582C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.42C>G
  hgvsp: ENST00000540748.1:c.42C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-64C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.888C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.390C>G
  hgvsp: ENST00000529414.1:c.390C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*107C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+594C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-186C>G
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu130Leu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

11-64880779-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880779
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880778
    reference: chr 11
allele count: 1
allele frequency: 8.34125752798492e-6
allele num: 119886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.891delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+597delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+443delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*68delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.393delG
  hgvsp: ENSP00000329520.6:p.Leu133TrpfsTer18
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.212delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-61delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1053delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.306delG
  hgvsp: ENSP00000435972.1:p.Leu104TrpfsTer18
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+597delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.570delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.585delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.393delG
  hgvsp: ENSP00000279263.7:p.Leu133TrpfsTer18
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.45delG
  hgvsp: ENSP00000441215.1:p.Leu17TrpfsTer18
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.393delG
  hgvsp: ENSP00000433275.1:p.Leu133TrpfsTer18
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.95delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*110delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.306delG
  hgvsp: ENSP00000433325.1:p.Leu104TrpfsTer18
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-183delG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-183delG
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu133TrpfsTer18
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: TG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

11-64880783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880783
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880783
    reference: chr 11
allele count: 1
allele frequency: 8.328613785521537e-6
allele num: 120068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*71C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+600C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.588C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.309C>T
  hgvsp: ENST00000524986.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.215C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.396C>T
  hgvsp: ENST00000529414.1:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.573C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1056C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.309C>T
  hgvsp: ENST00000525385.1:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.396C>T
  hgvsp: ENST00000279263.7:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.98C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*113C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-58C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.48C>T
  hgvsp: ENST00000540748.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-180C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.894C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-58C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+446C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-180C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-180C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro132Pro
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

11-64880788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880788
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880788
    reference: chr 11
allele count: 1
allele frequency: 8.320575118152166e-6
allele num: 120184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-175C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.401C>T
  hgvsp: ENSP00000279263.7:p.Ala134Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+605C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*76C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*118C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.899C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-175C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-175C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.314C>T
  hgvsp: ENSP00000435972.1:p.Ala105Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.314C>T
  hgvsp: ENSP00000433325.1:p.Ala105Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.578C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.401C>T
  hgvsp: ENSP00000433275.1:p.Ala134Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.593C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.220C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.53C>T
  hgvsp: ENSP00000441215.1:p.Ala18Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1061C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-53C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+605C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-53C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+451C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala134Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

11-64880789-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880789
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880789
    reference: chr 11
allele count: 1
allele frequency: 8.316838270762986e-6
allele num: 120238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.402G>A
  hgvsp: ENST00000529414.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1062G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-174G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.402G>A
  hgvsp: ENST00000345348.5:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+606G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.54G>A
  hgvsp: ENST00000540748.1:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+606G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.315G>A
  hgvsp: ENST00000524986.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.594G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.315G>A
  hgvsp: ENST00000525385.1:c.315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-174G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-52G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.900G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.402G>A
  hgvsp: ENST00000279263.7:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.221G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-52G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.579G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*119G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*77G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-174G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala134Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

11-64880795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880795
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880795
    reference: chr 11
allele count: 1
allele frequency: 8.309098462816784e-6
allele num: 120350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.600C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+612C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.906C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*125C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1068C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-168C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.408C>T
  hgvsp: ENST00000529414.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.408C>T
  hgvsp: ENST00000345348.5:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-46C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-168C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.408C>T
  hgvsp: ENST00000279263.7:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-168C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.60C>T
  hgvsp: ENST00000540748.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.321C>T
  hgvsp: ENST00000525385.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.321C>T
  hgvsp: ENST00000524986.1:c.321C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*83C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.585C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-46C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+458C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.110C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val136Val
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-64880796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880796
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880796
    reference: chr 11
allele count: 5
allele frequency: 4.153720903185073e-5
allele num: 120374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-167G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-167G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1069G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.907G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+613G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*126G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.409G>A
  hgvsp: ENSP00000279263.7:p.Ala137Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.322G>A
  hgvsp: ENSP00000433325.1:p.Ala108Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.61G>A
  hgvsp: ENSP00000441215.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.322G>A
  hgvsp: ENSP00000435972.1:p.Ala108Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*84G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.111G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.228G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.409G>A
  hgvsp: ENSP00000433275.1:p.Ala137Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+613G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.586G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.409G>A
  hgvsp: ENSP00000329520.6:p.Ala137Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-167G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.601G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-45G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala137Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

11-64880804-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880804
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880804
    reference: chr 11
allele count: 5
allele frequency: 4.149790850541133e-5
allele num: 120488
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+621C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.330C>G
  hgvsp: ENST00000524986.1:c.330C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+621C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*134C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-37C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.330C>G
  hgvsp: ENST00000525385.1:c.330C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.609C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-159C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.417C>G
  hgvsp: ENST00000529414.1:c.417C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.594C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1077C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.417C>G
  hgvsp: ENST00000279263.7:c.417C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.417C>G
  hgvsp: ENST00000345348.5:c.417C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-37C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.119C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.236C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.915C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.69C>G
  hgvsp: ENST00000540748.1:c.69C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*92C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+467C>G
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu139Leu
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

11-64880807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880807
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880807
    reference: chr 11
allele count: 1
allele frequency: 8.297928836962294e-6
allele num: 120512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1080C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-34C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.333C>T
  hgvsp: ENST00000525385.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+470C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.420C>T
  hgvsp: ENST00000279263.7:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-156C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-34C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.420C>T
  hgvsp: ENST00000345348.5:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*137C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.333C>T
  hgvsp: ENST00000524986.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*95C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.918C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.72C>T
  hgvsp: ENST00000540748.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.612C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.239C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.420C>T
  hgvsp: ENST00000529414.1:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.122C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-156C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-156C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+624C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Thr140Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

11-64880816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880816
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880816
    reference: chr 11
allele count: 6
allele frequency: 4.976032111993896e-5
allele num: 120578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.248C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.342C>T
  hgvsp: ENST00000524986.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.606C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-25C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.342C>T
  hgvsp: ENST00000525385.1:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.927C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-147C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1089C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.621C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.429C>T
  hgvsp: ENST00000345348.5:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.429C>T
  hgvsp: ENST00000279263.7:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-147C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+479C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*146C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.429C>T
  hgvsp: ENST00000529414.1:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*104C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.131C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+633C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+633C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-25C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ile143Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

11-64880818-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880818
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880818
    reference: chr 11
allele count: 1
allele frequency: 8.292148993333113e-6
allele num: 120596
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-145T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.133T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.431T>C
  hgvsp: ENSP00000433275.1:p.Phe144Ser
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+635T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.83T>C
  hgvsp: ENSP00000441215.1:p.Phe28Ser
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.623T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*106T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.608T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.344T>C
  hgvsp: ENSP00000433325.1:p.Phe115Ser
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-23T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.431T>C
  hgvsp: ENSP00000279263.7:p.Phe144Ser
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.431T>C
  hgvsp: ENSP00000329520.6:p.Phe144Ser
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1091T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.344T>C
  hgvsp: ENSP00000435972.1:p.Phe115Ser
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*148T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.250T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+481T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-145T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-23T>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-145T>C
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Phe144Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

11-64880825-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880825
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880823
    reference: chr 11
allele count: 5
allele frequency: 4.145112083830747e-5
allele num: 120624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.353_354delTT
  hgvsp: ENSP00000433325.1:p.Phe118SerfsTer46
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-14_250-13delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.938_939delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.440_441delTT
  hgvsp: ENSP00000329520.6:p.Phe147SerfsTer46
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*115_*116delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-14_162-13delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.353_354delTT
  hgvsp: ENSP00000435972.1:p.Phe118SerfsTer46
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1100_1101delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-136_305-135delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.632_633delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.440_441delTT
  hgvsp: ENSP00000279263.7:p.Phe147SerfsTer46
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.92_93delTT
  hgvsp: ENSP00000441215.1:p.Phe31SerfsTer46
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.440_441delTT
  hgvsp: ENSP00000433275.1:p.Phe147SerfsTer35
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.142_143delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.259_260delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+490_304+491delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-136_218-135delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+644_393+645delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-136_53-135delTT
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*157_*158delTT
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Phe147SerfsTer46
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: CTT
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

11-64880835-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880835
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880835
    reference: chr 11
allele count: 1
allele frequency: 8.288437629506838e-6
allele num: 120650
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-128A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*123A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.448A>G
  hgvsp: ENSP00000279263.7:p.Met150Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-128A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.946A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+498A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.448A>G
  hgvsp: ENSP00000433275.1:p.Met150Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.640A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.361A>G
  hgvsp: ENSP00000435972.1:p.Met121Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.361A>G
  hgvsp: ENSP00000433325.1:p.Met121Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.448A>G
  hgvsp: ENSP00000329520.6:p.Met150Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.100A>G
  hgvsp: ENSP00000441215.1:p.Met34Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.150A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+652A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-6A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.625A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-6A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.267A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*165A>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1108A>G
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Met150Val
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

11-64880836-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880836
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880836
    reference: chr 11
allele count: 1
allele frequency: 8.288162845823595e-6
allele num: 120654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*124T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.449T>G
  hgvsp: ENSP00000433275.1:p.Met150Arg
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1109T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+499T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-127T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.362T>G
  hgvsp: ENSP00000435972.1:p.Met121Arg
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.101T>G
  hgvsp: ENSP00000441215.1:p.Met34Arg
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.151T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.641T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.449T>G
  hgvsp: ENSP00000329520.6:p.Met150Arg
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.162-5T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*166T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.250-5T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-127T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.362T>G
  hgvsp: ENSP00000433325.1:p.Met121Arg
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.947T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.449T>G
  hgvsp: ENSP00000279263.7:p.Met150Arg
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+653T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.626T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.268T>G
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Met150Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

11-64880842-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880842
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880842
    reference: chr 11
allele count: 5
allele frequency: 4.143944040179681e-5
allele num: 120658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1115C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.251C>G
  hgvsp: ENSP00000432187.1:p.Ala84Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.455C>G
  hgvsp: ENSP00000329520.6:p.Ala152Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-121C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.368C>G
  hgvsp: ENSP00000435972.1:p.Ala123Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.455C>G
  hgvsp: ENSP00000279263.7:p.Ala152Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.368C>G
  hgvsp: ENSP00000433325.1:p.Ala123Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.455C>G
  hgvsp: ENSP00000433275.1:p.Ala152Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.953C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*172C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.632C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.107C>G
  hgvsp: ENSP00000441215.1:p.Ala36Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.647C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.163C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+659C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.274C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-121C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.157C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+505C>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*130C>G
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala152Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

11-64880842-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880842
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880842
    reference: chr 11
allele count: 1
allele frequency: 8.287888080359362e-6
allele num: 120658
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.107C>T
  hgvsp: ENSP00000441215.1:p.Ala36Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1115C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-121C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.455C>T
  hgvsp: ENSP00000433275.1:p.Ala152Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.455C>T
  hgvsp: ENSP00000329520.6:p.Ala152Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*172C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.632C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.163C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+659C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*130C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+505C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.274C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.368C>T
  hgvsp: ENSP00000433325.1:p.Ala123Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.251C>T
  hgvsp: ENSP00000432187.1:p.Ala84Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.455C>T
  hgvsp: ENSP00000279263.7:p.Ala152Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.157C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-121C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.647C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.368C>T
  hgvsp: ENSP00000435972.1:p.Ala123Val
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-121C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala152Val
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/11-64880844-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880844
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880844
    reference: chr 11
allele count: 1
allele frequency: 8.287063893262618e-6
allele num: 120670
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.457C>A
  hgvsp: ENSP00000433275.1:p.Gln153Lys
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.649C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-119C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.457C>A
  hgvsp: ENSP00000279263.7:p.Gln153Lys
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-119C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.276C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+661C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*174C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.253C>A
  hgvsp: ENSP00000432187.1:p.Gln85Lys
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.159C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.634C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.370C>A
  hgvsp: ENSP00000433325.1:p.Gln124Lys
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.370C>A
  hgvsp: ENSP00000435972.1:p.Gln124Lys
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*132C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.109C>A
  hgvsp: ENSP00000441215.1:p.Gln37Lys
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.457C>A
  hgvsp: ENSP00000329520.6:p.Gln153Lys
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+507C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1117C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.165C>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.955C>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln153Lys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

11-64880850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880850
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880850
    reference: chr 11
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.171G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.655G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.961G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.115G>A
  hgvsp: ENSP00000441215.1:p.Ala39Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-113G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*138G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-113G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.463G>A
  hgvsp: ENSP00000433275.1:p.Ala155Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000532328
  gene symbol: TM7SF2
  hgvsc: ENST00000532328.1:n.8G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.376G>A
  hgvsp: ENSP00000435972.1:p.Ala126Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.165G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*180G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.376G>A
  hgvsp: ENSP00000433325.1:p.Ala126Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+667G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+667G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.259G>A
  hgvsp: ENSP00000432187.1:p.Ala87Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.463G>A
  hgvsp: ENSP00000279263.7:p.Ala155Thr
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-113G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1123G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+513G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala155Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

11-64880857-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880857
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880857
    reference: chr 11
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*145T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.470T>G
  hgvsp: ENSP00000329520.6:p.Val157Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-106T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.266T>G
  hgvsp: ENSP00000432187.1:p.Val89Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-106T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.122T>G
  hgvsp: ENSP00000441215.1:p.Val41Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.172T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.383T>G
  hgvsp: ENSP00000435972.1:p.Val128Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.470T>G
  hgvsp: ENSP00000279263.7:p.Val157Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.289T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*187T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000532328
  gene symbol: TM7SF2
  hgvsc: ENST00000532328.1:n.15T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.662T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.178T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.383T>G
  hgvsp: ENSP00000433325.1:p.Val128Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-106T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.470T>G
  hgvsp: ENSP00000433275.1:p.Val157Gly
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+520T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.968T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+674T>G
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Val157Gly
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

11-64880859-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880859
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880859
    reference: chr 11
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.385T>G
  hgvsp: ENSP00000433325.1:p.Ser129Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.472T>G
  hgvsp: ENSP00000433275.1:p.Ser158Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*147T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-104T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.649T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1132T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.472T>G
  hgvsp: ENSP00000329520.6:p.Ser158Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+522T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.268T>G
  hgvsp: ENSP00000432187.1:p.Ser90Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.664T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.124T>G
  hgvsp: ENSP00000441215.1:p.Ser42Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+676T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.174T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.472T>G
  hgvsp: ENSP00000279263.7:p.Ser158Ala
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-104T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.970T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*189T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-104T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.291T>G
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+676T>G
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser158Ala
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

11-64880861-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880861
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880861
    reference: chr 11
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-102G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.270G>C
  hgvsp: ENST00000534371.1:c.270G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*191G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.474G>C
  hgvsp: ENST00000345348.5:c.474G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.474G>C
  hgvsp: ENST00000279263.7:c.474G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1134G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-102G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000532328
  gene symbol: TM7SF2
  hgvsc: ENST00000532328.1:n.19G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.387G>C
  hgvsp: ENST00000524986.1:c.387G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*149G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.293G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.666G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.126G>C
  hgvsp: ENST00000540748.1:c.126G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.387G>C
  hgvsp: ENST00000525385.1:c.387G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.651G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+678G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-102G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.176G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+678G>C
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.972G>C
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ser158Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

11-64880863-CCCTGGCA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880863
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880856
    reference: chr 11
allele count: 1
allele frequency: 8.284592315212168e-6
allele num: 120706
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.674_680delCACCTGG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.395_401delCACCTGG
  hgvsp: ENSP00000433325.1:p.Ala132GlyfsTer47
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.980_986delCACCTGG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1142_1148delCACCTGG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.395_401delCACCTGG
  hgvsp: ENSP00000435972.1:p.Ala132GlyfsTer47
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.482_488delCACCTGG
  hgvsp: ENSP00000279263.7:p.Ala161GlyfsTer47
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.482_488delCACCTGG
  hgvsp: ENSP00000433275.1:p.Ala161GlyfsTer36
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.134_140delCACCTGG
  hgvsp: ENSP00000441215.1:p.Ala45GlyfsTer47
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000532328
  gene symbol: TM7SF2
  hgvsc: ENST00000532328.1:n.27_33delCACCTGG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.659_665delCACCTGG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.278_284delCACCTGG
  hgvsp: ENSP00000432187.1:p.Ala93GlyfsTer47
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.301_307delCACCTGG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-94_53-88delCACCTGG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.482_488delCACCTGG
  hgvsp: ENSP00000329520.6:p.Ala161GlyfsTer47
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*199_*205delCACCTGG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.184_190delCACCTGG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*157_*163delCACCTGG
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala161GlyfsTer47
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: CCCTGGCA
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

11-64880872-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880872
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880872
    reference: chr 11
allele count: 1
allele frequency: 8.284455048546906e-6
allele num: 120708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.983C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+689C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-91C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.137C>T
  hgvsp: ENSP00000441215.1:p.Pro46Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000532328
  gene symbol: TM7SF2
  hgvsc: ENST00000532328.1:n.30C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.398C>T
  hgvsp: ENSP00000433325.1:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+689C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1145C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+535C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.187C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-91C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.677C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.485C>T
  hgvsp: ENSP00000279263.7:p.Pro162Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.281C>T
  hgvsp: ENSP00000432187.1:p.Pro94Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.398C>T
  hgvsp: ENSP00000435972.1:p.Pro133Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.485C>T
  hgvsp: ENSP00000329520.6:p.Pro162Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.485C>T
  hgvsp: ENSP00000433275.1:p.Pro162Leu
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.662C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.193C>T
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*202C>T
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro162Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD

11-64880876-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880876
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880876
    reference: chr 11
allele count: 2
allele frequency: 1.656753756689143e-5
allele num: 120718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.141G>A
  hgvsp: ENST00000540748.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.402G>A
  hgvsp: ENST00000525385.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.308G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000532328
  gene symbol: TM7SF2
  hgvsc: ENST00000532328.1:n.34G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.191G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.489G>A
  hgvsp: ENST00000279263.7:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530892
  gene symbol: TM7SF2
  hgvsc: ENST00000530892.1:n.681G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.666G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000436370
  ensembl transcript: ENST00000529292
  gene symbol: TM7SF2
  hgvsc: ENST00000529292.1:c.304+539G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-87G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1149G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.402G>A
  hgvsp: ENST00000524986.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-87G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.489G>A
  hgvsp: ENST00000345348.5:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.197G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*206G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.489G>A
  hgvsp: ENST00000529414.1:c.489G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.285G>A
  hgvsp: ENST00000534371.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+693G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+693G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly163Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

11-64880892-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880892
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880893
    reference: chr 11
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.499+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.151+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.499+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.318+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-67dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.499+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.412+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*216+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000532328
  gene symbol: TM7SF2
  hgvsc: ENST00000532328.1:n.44+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.201+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-67dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.686dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.997+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*174+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+713dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.295+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1159+10dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+713dupG
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-67dupG
  variant of: http://identifiers.org/hgnc/11863
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.499+10dupG
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: FS

11-64880895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64880895
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 64880895
    reference: chr 11
allele count: 1
allele frequency: 8.28239659427852e-6
allele num: 120738
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432171
  ensembl transcript: ENST00000526809
  gene symbol: TM7SF2
  hgvsc: ENST00000526809.1:c.249+712G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000529233
  gene symbol: TM7SF2
  hgvsc: ENST00000529233.1:n.207+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000531029
  gene symbol: TM7SF2
  hgvsc: ENST00000531029.1:n.318+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435972
  ensembl transcript: ENST00000524986
  gene symbol: TM7SF2
  hgvsc: ENST00000524986.1:c.412+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433325
  ensembl transcript: ENST00000525385
  gene symbol: TM7SF2
  hgvsc: ENST00000525385.1:c.412+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000441215
  ensembl transcript: ENST00000540748
  gene symbol: TM7SF2
  hgvsc: ENST00000540748.1:c.151+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432413
  ensembl transcript: ENST00000530750
  gene symbol: TM7SF2
  hgvsc: ENST00000530750.1:c.305-68G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000530650
  gene symbol: TM7SF2
  hgvsc: ENST00000530650.1:n.1159+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434447
  ensembl transcript: ENST00000526085
  gene symbol: TM7SF2
  hgvsc: ENST00000526085.1:c.53-68G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000329520
  ensembl transcript: ENST00000345348
  gene symbol: TM7SF2
  hgvsc: ENST00000345348.5:c.499+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000528026
  gene symbol: TM7SF2
  hgvsc: ENST00000528026.1:n.393+712G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000433275
  ensembl transcript: ENST00000529414
  gene symbol: TM7SF2
  hgvsc: ENST00000529414.1:c.499+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000279263
  ensembl transcript: ENST00000279263
  gene symbol: TM7SF2
  hgvsc: ENST00000279263.7:c.499+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000435458
  ensembl transcript: ENST00000529601
  gene symbol: TM7SF2
  hgvsc: ENST00000529601.1:c.*174+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000527851
  gene symbol: TM7SF2
  hgvsc: ENST00000527851.1:n.685G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000431300
  ensembl transcript: ENST00000531321
  gene symbol: TM7SF2
  hgvsc: ENST00000531321.1:c.218-68G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000534667
  gene symbol: TM7SF2
  hgvsc: ENST00000534667.1:n.201+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000432187
  ensembl transcript: ENST00000534371
  gene symbol: TM7SF2
  hgvsc: ENST00000534371.1:c.295+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl protein: ENSP00000434598
  ensembl transcript: ENST00000524690
  gene symbol: TM7SF2
  hgvsc: ENST00000524690.1:c.*216+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000533766
  gene symbol: TM7SF2
  hgvsc: ENST00000533766.1:n.997+9G>A
  variant of: http://identifiers.org/hgnc/11863
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000149809
  ensembl transcript: ENST00000532328
  gene symbol: TM7SF2
  hgvsc: ENST00000532328.1:n.44+9G>A
  variant of: http://identifiers.org/hgnc/11863
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000433325
ensembl transcript: ENST00000525385
gene symbol: TM7SF2
hgvsc: ENST00000525385.1:c.217+25C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 2166
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3639
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 411
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2103
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29213
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 781
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 471
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4989
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25878
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 745
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.287995878413189e-4
allele num: 7764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: -1.236e0

QD
type: SiteQuality
SIO_000300: 1.428e1

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 6.773e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.49e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.901e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 2.50244e5

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000436370
ensembl transcript: ENST00000529292
gene symbol: TM7SF2
hgvsc: ENST00000529292.1:c.304+26T>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 464
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 794
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3594
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2091
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2143
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 29012
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 450
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3644
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25548
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1716
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4952
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.53e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

QD
type: SiteQuality
SIO_000300: 8.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: -2.037e0

DP
type: SiteQuality
SIO_000300: 2.48882e5

FS
type: SiteQuality
SIO_000300: 0.0e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000529233
gene symbol: TM7SF2
hgvsc: ENST00000529233.1:n.161+28G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2019
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2020
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28363
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3453
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 600
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 852
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 455
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4492
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4694
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24064
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7750
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.649999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.031e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

QD
type: SiteQuality
SIO_000300: 1.902e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.44133e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000433325
ensembl transcript: ENST00000525385
gene symbol: TM7SF2
hgvsc: ENST00000525385.1:c.217+36C>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1851
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 447
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 925
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3141
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27338
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1084
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1736
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5846
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4045
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21648
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1278
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.988071570576541e-4
allele num: 5030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.135e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.77e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.76e-1

DP
type: SiteQuality
SIO_000300: 2.3465e5

FS
type: SiteQuality
SIO_000300: 1.871e0

VQSLOD
type: SiteQuality
SIO_000300: -1.559e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432171
ensembl transcript: ENST00000526809
gene symbol: TM7SF2
hgvsc: ENST00000526809.1:c.249+191G>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1834
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 931
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3031
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27019
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1283
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1668
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 412
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3734
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6606
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20556
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5016
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.225092250922509e-4
allele num: 1084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.67e-1

FS
type: SiteQuality
SIO_000300: 1.038e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

MQRankSum
type: SiteQuality
SIO_000300: -1.26e-1

DP
type: SiteQuality
SIO_000300: 2.31067e5

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: -7.586000000000001e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000329520
ensembl transcript: ENST00000345348
gene symbol: TM7SF2
hgvsc: ENST00000345348.5:c.304+40C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1643
bin: 2.75e1
variant carriers: 5

GenotypeDepth
all individuals: 1841
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 1362
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 75
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 405
bin: 3.25e1
variant carriers: 10

GenotypeDepth
all individuals: 0
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2957
bin: 2.25e1
variant carriers: 11

GenotypeDepth
all individuals: 1
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27038
bin: 2.5e0
variant carriers: 2

GenotypeDepth
all individuals: 938
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 4.25e1
variant carriers: 6

GenotypeDepth
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20585
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 319
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 9.75e1
variant carriers: 38

GenotypeQuality
all individuals: 577
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 587
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6595
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3690
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 3.164556962025316e-3
allele num: 316
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 4.686279614683676e-3
allele num: 7682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 6.84931506849315e-3
allele num: 146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1088
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.30498e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.91e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

QD
type: SiteQuality
SIO_000300: 1.342e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.92e-2

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28560
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 826
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13467
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3087
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13497
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5721
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9907
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17834
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1678
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2562
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.7503e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.185e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.39e-2

QD
type: SiteQuality
SIO_000300: 1.088e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeDepth
all individuals: 13496
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3047
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 880
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13419
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 209
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28608
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1340
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7261
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10005
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5607
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18857
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5548
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.32e-2

DP
type: SiteQuality
SIO_000300: 4.76985e5

MQ
type: SiteQuality
SIO_000300: 5.516e1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeDepth
all individuals: 12296
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2692
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29338
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1450
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13671
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23004
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4475
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9917
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5237
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4465
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5559
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.038291011688835e-5
allele num: 19848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3358
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.766e1

QD
type: SiteQuality
SIO_000300: 9.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.19e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.268e0

DP
type: SiteQuality
SIO_000300: 4.93932e5

VQSLOD
type: SiteQuality
SIO_000300: -1.689e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQRankSum
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VQSLOD
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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FS
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MQ
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DP
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East Asian
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South Asian
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MQ
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FS
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.492e1

GenotypeDepth
all individuals: 1784
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3406
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9906
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30863
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12867
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1223
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 232
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3719
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11633
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3994
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30973
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3300
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.471740036106096e-5
allele num: 28804
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 7.051e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.418e0

MQRankSum
type: SiteQuality
SIO_000300: -1.022e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

QD
type: SiteQuality
SIO_000300: 1.19e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000530650
gene symbol: TM7SF2
hgvsc: ENST00000530650.1:n.971A>C
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000527851
gene symbol: TM7SF2
hgvsc: ENST00000527851.1:n.488A>C
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1777
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 17787
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1184
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 971
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5027
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4358
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29176
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3080
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18316
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.375209380234506e-5
allele num: 11940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46016
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.659475605708596e-4
allele num: 6026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4310
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 1.011915e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

FS
type: SiteQuality
SIO_000300: 1.771e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.359e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432187
ensembl transcript: ENST00000534371
gene symbol: TM7SF2
hgvsc: ENST00000534371.1:c.250-135G>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000533766
gene symbol: TM7SF2
hgvsc: ENST00000533766.1:n.817G>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5661
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3821
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13082
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1714
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33761
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1490
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 686
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31499
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1392
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13575
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3963
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4912
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.760360080707745e-5
allele num: 51544
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e0

DP
type: SiteQuality
SIO_000300: 1.110058e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

FS
type: SiteQuality
SIO_000300: 2.108e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.185e1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000329520
ensembl transcript: ENST00000345348
gene symbol: TM7SF2
hgvsc: ENST00000345348.5:c.327A>G
hgvsp: ENST00000345348.5:c.327A>G(p.%3D)
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000527851
gene symbol: TM7SF2
hgvsc: ENST00000527851.1:n.504A>G
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8920
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1042
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37639
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2304
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2750
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 501
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6984
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 231
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4858
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9321
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.781705448455261e-5
allele num: 56126
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

DP
type: SiteQuality
SIO_000300: 1.199509e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e-1

FS
type: SiteQuality
SIO_000300: 2.341e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.179e0

QD
type: SiteQuality
SIO_000300: 9.630000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.933e1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000436370
ensembl transcript: ENST00000529292
gene symbol: TM7SF2
hgvsc: ENST00000529292.1:c.304+378G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432413
ensembl transcript: ENST00000530750
gene symbol: TM7SF2
hgvsc: ENST00000530750.1:c.305-248G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37783
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2391
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8576
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2668
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 488
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1063
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8972
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 700
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35633
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1944
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4880
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.771981429634617e-5
allele num: 56434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.003e0

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 6.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.552e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.207411e6

MQRankSum
type: SiteQuality
SIO_000300: 5.17e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000529233
gene symbol: TM7SF2
hgvsc: ENST00000529233.1:n.162-118G>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432413
ensembl transcript: ENST00000530750
gene symbol: TM7SF2
hgvsc: ENST00000530750.1:c.305-240G>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 932
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2018
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39441
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 368
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8106
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 68
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 6095
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 326
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3055
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5343
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1512
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.075283369988158e-5
allele num: 59110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.049e0

FS
type: SiteQuality
SIO_000300: 4.114e0

DP
type: SiteQuality
SIO_000300: 1.265666e6

VQSLOD
type: SiteQuality
SIO_000300: 9.08e-1

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000434598
ensembl transcript: ENST00000524690
gene symbol: TM7SF2
hgvsc: ENST00000524690.1:c.*55T>G
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000436370
ensembl transcript: ENST00000529292
gene symbol: TM7SF2
hgvsc: ENST00000529292.1:c.304+388T>G
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 967
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1975
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5728
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8365
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 350
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3173
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39435
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 771
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37164
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5398
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.681293923803759e-5
allele num: 59478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5922
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

QD
type: SiteQuality
SIO_000300: 1.682e1

VQSLOD
type: SiteQuality
SIO_000300: -1.248e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.274911e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.383e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e0

MQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000534667
gene symbol: TM7SF2
hgvsc: ENST00000534667.1:n.43G>C
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000529233
gene symbol: TM7SF2
hgvsc: ENST00000529233.1:n.162-113G>C
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39491
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3328
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5278
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8694
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 958
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 325
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1880
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 367
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5596
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 738
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 330
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37535
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.330557868442964e-5
allele num: 60050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.235e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: -6.860000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

DP
type: SiteQuality
SIO_000300: 1.287334e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.13e-1

QD
type: SiteQuality
SIO_000300: 1.192e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432187
ensembl transcript: ENST00000534371
gene symbol: TM7SF2
hgvsc: ENST00000534371.1:c.250-109G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000528026
gene symbol: TM7SF2
hgvsc: ENST00000528026.1:n.393+549G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4497
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1666
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 868
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9300
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 275
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 417
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3617
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 39654
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4814
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38402
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5762
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2555
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 682
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.641820450515532e-5
allele num: 60908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.218e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

DP
type: SiteQuality
SIO_000300: 1.310452e6

QD
type: SiteQuality
SIO_000300: 1.112e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.402e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.3e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000434447
ensembl transcript: ENST00000526085
gene symbol: TM7SF2
hgvsc: ENST00000526085.1:c.53-229G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000434598
ensembl transcript: ENST00000524690
gene symbol: TM7SF2
hgvsc: ENST00000524690.1:c.*64G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 4243
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 269
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 863
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 431
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1599
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3694
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9496
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39695
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5837
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38278
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 515
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632013578352972e-5
allele num: 61274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.425e0

QD
type: SiteQuality
SIO_000300: 1.35e1

DP
type: SiteQuality
SIO_000300: 1.317374e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000434598
ensembl transcript: ENST00000524690
gene symbol: TM7SF2
hgvsc: ENST00000524690.1:c.*68G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000431300
ensembl transcript: ENST00000531321
gene symbol: TM7SF2
hgvsc: ENST00000531321.1:c.218-225G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 39904
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1471
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3815
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3797
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 236
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 804
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9794
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38944
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2692
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.618856439810918e-5
allele num: 61772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.257e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.61e-1

MQ
type: SiteQuality
SIO_000300: 5.839e1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e0

FS
type: SiteQuality
SIO_000300: 1.994e0

VQSLOD
type: SiteQuality
SIO_000300: -1.56e0

DP
type: SiteQuality
SIO_000300: 1.329723e6

QD
type: SiteQuality
SIO_000300: 1.401e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432187
ensembl transcript: ENST00000534371
gene symbol: TM7SF2
hgvsc: ENST00000534371.1:c.250-98C>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000529233
gene symbol: TM7SF2
hgvsc: ENST00000529233.1:n.162-98C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1250
bin: 3.75e1
variant carriers: 752

GenotypeDepth
all individuals: 23
bin: 8.25e1
variant carriers: 23

GenotypeDepth
all individuals: 197
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 593
bin: 4.75e1
variant carriers: 551

GenotypeDepth
all individuals: 965
bin: 1.75e1
variant carriers: 226

GenotypeDepth
all individuals: 4483
bin: 3.25e1
variant carriers: 692

GenotypeDepth
all individuals: 807
bin: 4.25e1
variant carriers: 652

GenotypeDepth
all individuals: 178
bin: 6.25e1
variant carriers: 177

GenotypeDepth
all individuals: 3036
bin: 7.5e0
variant carriers: 23

GenotypeDepth
all individuals: 39
bin: 7.75e1
variant carriers: 37

GenotypeDepth
all individuals: 41
bin: 7.25e1
variant carriers: 39

GenotypeDepth
all individuals: 9935
bin: 2.75e1
variant carriers: 476

GenotypeDepth
all individuals: 36659
bin: 2.25e1
variant carriers: 338

GenotypeDepth
all individuals: 1340
bin: 1.25e1
variant carriers: 93

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 3

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 5

GenotypeDepth
all individuals: 26
bin: 9.75e1
variant carriers: 26

GenotypeDepth
all individuals: 299
bin: 5.75e1
variant carriers: 295

GenotypeDepth
all individuals: 467
bin: 5.25e1
variant carriers: 453

GenotypeDepth
all individuals: 107
bin: 6.75e1
variant carriers: 104

GenotypeQuality
all individuals: 205
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 523
bin: 9.25e1
variant carriers: 19

GenotypeQuality
all individuals: 5168
bin: 9.75e1
variant carriers: 4848

GenotypeQuality
all individuals: 399
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 257
bin: 4.25e1
variant carriers: 9

GenotypeQuality
all individuals: 473
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2507
bin: 7.75e1
variant carriers: 13

GenotypeQuality
all individuals: 3303
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 356
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 363
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 554
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 422
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 35872
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 5562
bin: 6.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2025
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1653
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 510
bin: 8.75e1
variant carriers: 14

African
type: Population
allele count: 69
allele frequency: 7.869525547445256e-3
allele num: 8768
num of homozygotes: 1

East Asian
type: Population
allele count: 611
allele frequency: 7.326139088729017e-2
allele num: 8340
num of homozygotes: 22

South Asian
type: Population
allele count: 171
allele frequency: 1.061716130634546e-2
allele num: 16106
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 2788
allele frequency: 4.458232058334399e-2
allele num: 62536
num of homozygotes: 72

European (Finnish)
type: Population
allele count: 615
allele frequency: 9.718710493046777e-2
allele num: 6328
num of homozygotes: 21

Latino
type: Population
allele count: 784
allele frequency: 7.049091889947851e-2
allele num: 11122
num of homozygotes: 32

Other
type: Population
allele count: 50
allele frequency: 5.773672055427252e-2
allele num: 866
num of homozygotes: 2

VQSLOD
type: SiteQuality
SIO_000300: 6.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.179e0

QD
type: SiteQuality
SIO_000300: 1.411e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.435677e6

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000436370
ensembl transcript: ENST00000529292
gene symbol: TM7SF2
hgvsc: ENST00000529292.1:c.304+407G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000531029
gene symbol: TM7SF2
hgvsc: ENST00000531029.1:n.176G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 10199
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36838
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2775
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 882
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 784
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 198
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1275
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1229
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 104
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 45
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4583
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 431
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 580
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3073
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6017
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2875
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 186
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58750317500635e-5
allele num: 62992
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.183527083848628e-5
allele num: 16172
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.5e0

DP
type: SiteQuality
SIO_000300: 1.441188e6

QD
type: SiteQuality
SIO_000300: 1.644e1

FS
type: SiteQuality
SIO_000300: 2.962e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000533766
gene symbol: TM7SF2
hgvsc: ENST00000533766.1:n.869G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000433325
ensembl transcript: ENST00000525385
gene symbol: TM7SF2
hgvsc: ENST00000525385.1:c.284G>A
hgvsp: ENSP00000433325.1:p.Gly95Glu
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1380
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 164
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1375
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 102
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 651
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38013
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10979
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5016
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 384
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 817
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 592
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6433
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2440
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 802
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2891
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 236
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541069502234551e-5
allele num: 64890
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.445e1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

FS
type: SiteQuality
SIO_000300: 2.147e0

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.374e0

DP
type: SiteQuality
SIO_000300: 1.482002e6

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000527851
gene symbol: TM7SF2
hgvsc: ENST00000527851.1:n.550G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000528026
gene symbol: TM7SF2
hgvsc: ENST00000528026.1:n.393+577G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1375
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 589
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 376
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 820
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5063
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38080
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 593
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11023
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1293
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2903
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2184
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38896
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177856301531213e-4
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65024
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

DP
type: SiteQuality
SIO_000300: 1.484759e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.073e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.47e0

VQSLOD
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 1.243e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432413
ensembl transcript: ENST00000530750
gene symbol: TM7SF2
hgvsc: ENST00000530750.1:c.305-202C>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000531029
gene symbol: TM7SF2
hgvsc: ENST00000531029.1:n.193C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 360
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38099
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1225
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 284
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1383
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 592
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 170
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 827
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 568
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5098
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11061
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 162
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3131
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6477
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38896
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.532801961986511e-4
allele num: 6524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65098
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.15e-1

FS
type: SiteQuality
SIO_000300: 2.551e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.36e-1

DP
type: SiteQuality
SIO_000300: 1.48688e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.872e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000534667
gene symbol: TM7SF2
hgvsc: ENST00000534667.1:n.80C>G
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000529233
gene symbol: TM7SF2
hgvsc: ENST00000529233.1:n.162-76C>G
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 11

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 4

GenotypeDepth
all individuals: 107
bin: 6.75e1
variant carriers: 5

GenotypeDepth
all individuals: 295
bin: 5.75e1
variant carriers: 11

GenotypeDepth
all individuals: 5186
bin: 3.25e1
variant carriers: 5

GenotypeDepth
all individuals: 35
bin: 7.75e1
variant carriers: 4

GenotypeDepth
all individuals: 30
bin: 9.75e1
variant carriers: 8

GenotypeDepth
all individuals: 600
bin: 4.75e1
variant carriers: 4

GenotypeDepth
all individuals: 1414
bin: 3.75e1
variant carriers: 5

GenotypeDepth
all individuals: 403
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 908
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 848
bin: 4.25e1
variant carriers: 10

GenotypeDepth
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.25e1
variant carriers: 3

GenotypeDepth
all individuals: 11192
bin: 2.75e1
variant carriers: 5

GenotypeDepth
all individuals: 228
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 3

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 4

GenotypeDepth
all individuals: 38391
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6576
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39334
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 9.75e1
variant carriers: 84

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 2.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.732099196646873e-5
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65498
num of homozygotes: 0

African
type: Population
allele count: 85
allele frequency: 9.00996396014416e-3
allele num: 9434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

DP
type: SiteQuality
SIO_000300: 1.499236e6

QD
type: SiteQuality
SIO_000300: 1.482e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000530650
gene symbol: TM7SF2
hgvsc: ENST00000530650.1:n.1038C>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000533766
gene symbol: TM7SF2
hgvsc: ENST00000533766.1:n.876C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 600
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38391
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11192
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 173
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 403
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5186
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 908
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 848
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1414
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6576
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526764176005374e-5
allele num: 65498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

QD
type: SiteQuality
SIO_000300: 1.482e1

MQRankSum
type: SiteQuality
SIO_000300: 9.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.499236e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432171
ensembl transcript: ENST00000526809
gene symbol: TM7SF2
hgvsc: ENST00000526809.1:c.249+584C>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000529233
gene symbol: TM7SF2
hgvsc: ENST00000529233.1:n.162-74C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1434
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 182
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 599
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 443
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 191
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 107
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 808
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 144
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 856
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 340
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11260
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 301
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 5210
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6597
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 9.75e1
variant carriers: 11

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9450
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213592233009709e-4
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.056338028169014e-3
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65644
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.39e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.725e0

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.57e0

DP
type: SiteQuality
SIO_000300: 1.502806e6

FS
type: SiteQuality
SIO_000300: 6.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000436370
ensembl transcript: ENST00000529292
gene symbol: TM7SF2
hgvsc: ENST00000529292.1:c.304+440C>G
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000434447
ensembl transcript: ENST00000526085
gene symbol: TM7SF2
hgvsc: ENST00000526085.1:c.53-186C>G
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 866
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11499
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38695
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 442
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 459
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5305
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1450
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 204
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 301
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6720
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39947
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3217
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.512372e6

QD
type: SiteQuality
SIO_000300: 1.017e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

FS
type: SiteQuality
SIO_000300: 9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.12e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432187
ensembl transcript: ENST00000534371
gene symbol: TM7SF2
hgvsc: ENST00000534371.1:c.250-61delG
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000434447
ensembl transcript: ENST00000526085
gene symbol: TM7SF2
hgvsc: ENST00000526085.1:c.53-183delG
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 186
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 863
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38731
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 442
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 137
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11513
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 603
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5316
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 426
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 301
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1455
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6734
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39990
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3220
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66190
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.038853106170787e-4
allele num: 9626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.513374e6

QD
type: SiteQuality
SIO_000300: 1.721e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 4.862e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.69e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.367e0

MQ
type: SiteQuality
SIO_000300: 6.012e1

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000329520
ensembl transcript: ENST00000345348
gene symbol: TM7SF2
hgvsc: ENST00000345348.5:c.396C>T
hgvsp: ENST00000345348.5:c.396C>T(p.%3D)
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432171
ensembl transcript: ENST00000526809
gene symbol: TM7SF2
hgvsc: ENST00000526809.1:c.249+600C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 443
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 604
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1459
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 342
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 138
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 11550
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 161
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38772
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 871
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5338
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3219
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9660
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.35e-1

DP
type: SiteQuality
SIO_000300: 1.515614e6

FS
type: SiteQuality
SIO_000300: 2.846e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.521e0

VQSLOD
type: SiteQuality
SIO_000300: 6.09e-1

QD
type: SiteQuality
SIO_000300: 9.41e0

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000329520
ensembl transcript: ENST00000345348
gene symbol: TM7SF2
hgvsc: ENST00000345348.5:c.401C>T
hgvsp: ENSP00000329520.6:p.Ala134Val
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000534667
gene symbol: TM7SF2
hgvsc: ENST00000534667.1:n.103C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 875
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38791
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1464
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 442
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11605
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 285
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5342
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 606
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40145
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6768
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2281
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506750241080039e-5
allele num: 66368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.444e0

FS
type: SiteQuality
SIO_000300: 3.805e0

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.517396e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.03e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.85e-1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000436370
ensembl transcript: ENST00000529292
gene symbol: TM7SF2
hgvsc: ENST00000529292.1:c.304+452G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000534667
gene symbol: TM7SF2
hgvsc: ENST00000534667.1:n.104G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 442
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 143
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 38813
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1466
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 877
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 607
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11608
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5353
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2553
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6774
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505888022166672e-5
allele num: 66406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.92e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.149999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.518185e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.498e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000531029
gene symbol: TM7SF2
hgvsc: ENST00000531029.1:n.227C>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432171
ensembl transcript: ENST00000526809
gene symbol: TM7SF2
hgvsc: ENST00000526809.1:c.249+612C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1465
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 442
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38828
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 149
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 201
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5365
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11651
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 608
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 879
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504166541319455e-5
allele num: 66482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.439e0

DP
type: SiteQuality
SIO_000300: 1.519583e6

VQSLOD
type: SiteQuality
SIO_000300: -1.339e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.839e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.894e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.426e1

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000436370
ensembl transcript: ENST00000529292
gene symbol: TM7SF2
hgvsc: ENST00000529292.1:c.304+459G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432187
ensembl transcript: ENST00000534371
gene symbol: TM7SF2
hgvsc: ENST00000534371.1:c.250-45G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 5369
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 99
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 197
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 878
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 443
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 148
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 302
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38816
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11662
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 609
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1468
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6788
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40227
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 9.75e1
variant carriers: 5

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.014675808973896e-5
allele num: 66504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030502885408079e-4
allele num: 9704
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.520225e6

FS
type: SiteQuality
SIO_000300: 1.303e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

QD
type: SiteQuality
SIO_000300: 1.375e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000431300
ensembl transcript: ENST00000531321
gene symbol: TM7SF2
hgvsc: ENST00000531321.1:c.218-159C>G
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000434447
ensembl transcript: ENST00000526085
gene symbol: TM7SF2
hgvsc: ENST00000526085.1:c.53-159C>G
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1471
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38844
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 304
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 880
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5385
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 608
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11706
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 443
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.537205081669691e-4
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004717406327935e-5
allele num: 66562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.338e1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

FS
type: SiteQuality
SIO_000300: 2.246e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.52182e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000528026
gene symbol: TM7SF2
hgvsc: ENST00000528026.1:n.393+624C>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000527851
gene symbol: TM7SF2
hgvsc: ENST00000527851.1:n.597C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 306
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5385
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38854
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 880
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1472
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11715
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 443
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 608
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3025
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.553e0

VQSLOD
type: SiteQuality
SIO_000300: -7.311e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

DP
type: SiteQuality
SIO_000300: 1.522012e6

MQRankSum
type: SiteQuality
SIO_000300: 9.04e-1

QD
type: SiteQuality
SIO_000300: 6.92e0

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000441215
ensembl transcript: ENST00000540748
gene symbol: TM7SF2
hgvsc: ENST00000540748.1:c.81C>T
hgvsp: ENST00000540748.1:c.81C>T(p.%3D)
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432413
ensembl transcript: ENST00000530750
gene symbol: TM7SF2
hgvsc: ENST00000530750.1:c.305-147C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 38846
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5396
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1477
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 306
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 608
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 179
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 443
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 882
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 30
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 11751
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40360
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3031
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6819
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.482702577199907e-4
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501140867058965e-5
allele num: 66616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.048340843916428e-4
allele num: 9764
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.563e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.585e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 1.264e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

DP
type: SiteQuality
SIO_000300: 1.523799e6

QD
type: SiteQuality
SIO_000300: 1.251e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432171
ensembl transcript: ENST00000526809
gene symbol: TM7SF2
hgvsc: ENST00000526809.1:c.249+635T>C
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000533766
gene symbol: TM7SF2
hgvsc: ENST00000533766.1:n.929T>C
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 443
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38842
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5398
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11763
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 881
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1479
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 608
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3032
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40352
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3248
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6824
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

DP
type: SiteQuality
SIO_000300: 1.523644e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.328e0

FS
type: SiteQuality
SIO_000300: 1.7996e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.652e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

QD
type: SiteQuality
SIO_000300: 1.205e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432171
ensembl transcript: ENST00000526809
gene symbol: TM7SF2
hgvsc: ENST00000526809.1:c.249+644_249+645delTT
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000527851
gene symbol: TM7SF2
hgvsc: ENST00000527851.1:n.617_618delTT
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11790
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38819
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 884
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 33
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5404
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 306
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 116
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 180
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 1477
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 609
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40380
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.503001200480192e-5
allele num: 66640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.524599e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

FS
type: SiteQuality
SIO_000300: 5.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.57e-1

MQ
type: SiteQuality
SIO_000300: 6.025e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.03e-1

QD
type: SiteQuality
SIO_000300: 1.742e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000528026
gene symbol: TM7SF2
hgvsc: ENST00000528026.1:n.393+652A>G
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000431300
ensembl transcript: ENST00000531321
gene symbol: TM7SF2
hgvsc: ENST00000531321.1:c.218-128A>G
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 11815
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 181
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1476
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38770
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 884
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5419
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 611
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 445
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40331
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6827
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3247
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3037
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.272e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.84e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.919e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.524754e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000528026
gene symbol: TM7SF2
hgvsc: ENST00000528026.1:n.393+653T>G
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432413
ensembl transcript: ENST00000530750
gene symbol: TM7SF2
hgvsc: ENST00000530750.1:c.305-127T>G
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1475
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5418
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11815
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 884
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38775
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 613
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3247
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3035
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40348
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2289
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.719e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

QD
type: SiteQuality
SIO_000300: 1.462e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.97e0

VQSLOD
type: SiteQuality
SIO_000300: -1.006e0

FS
type: SiteQuality
SIO_000300: 2.445e0

DP
type: SiteQuality
SIO_000300: 1.52481e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000431300
ensembl transcript: ENST00000531321
gene symbol: TM7SF2
hgvsc: ENST00000531321.1:c.218-121C>G
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000528026
gene symbol: TM7SF2
hgvsc: ENST00000528026.1:n.393+659C>G
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 27
bin: 8.25e1
variant carriers: 2

GenotypeDepth
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1479
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 38730
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 882
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11840
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 611
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5432
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6833
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.000060000600006e-5
allele num: 66666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.022494887525562e-4
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.525629e6

MQ
type: SiteQuality
SIO_000300: 5.952e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

FS
type: SiteQuality
SIO_000300: 1.208e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000528026
gene symbol: TM7SF2
hgvsc: ENST00000528026.1:n.393+659C>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000533766
gene symbol: TM7SF2
hgvsc: ENST00000533766.1:n.953C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 27
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1479
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 109
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38730
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5432
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 611
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 882
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11840
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6833
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 851
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

FS
type: SiteQuality
SIO_000300: 1.208e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 1.221e1

DP
type: SiteQuality
SIO_000300: 1.525629e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432171
ensembl transcript: ENST00000526809
gene symbol: TM7SF2
hgvsc: ENST00000526809.1:c.249+661C>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432413
ensembl transcript: ENST00000530750
gene symbol: TM7SF2
hgvsc: ENST00000530750.1:c.305-119C>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000532328
gene symbol: TM7SF2
hgvsc: ENST00000532328.1:n.2C>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 11862
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 105
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1483
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38708
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5429
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 445
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 610
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 182
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 882
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6836
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3040
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.022076860179886e-4
allele num: 9784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

FS
type: SiteQuality
SIO_000300: 3.733e0

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

DP
type: SiteQuality
SIO_000300: 1.525416e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000531029
gene symbol: TM7SF2
hgvsc: ENST00000531029.1:n.282G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000527851
gene symbol: TM7SF2
hgvsc: ENST00000527851.1:n.640G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000329520
ensembl transcript: ENST00000345348
gene symbol: TM7SF2
hgvsc: ENST00000345348.5:c.463G>A
hgvsp: ENSP00000329520.6:p.Ala155Thr
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5430
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11875
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1484
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 882
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 610
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38707
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 97
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 47
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 445
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 183
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3041
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3246
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40362
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.173e0

FS
type: SiteQuality
SIO_000300: 5.081e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.089e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

DP
type: SiteQuality
SIO_000300: 1.525752e6

QD
type: SiteQuality
SIO_000300: 1.384e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000527851
gene symbol: TM7SF2
hgvsc: ENST00000527851.1:n.647T>G
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000528026
gene symbol: TM7SF2
hgvsc: ENST00000528026.1:n.393+674T>G
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000530650
gene symbol: TM7SF2
hgvsc: ENST00000530650.1:n.1130T>G
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 118
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11886
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5433
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 881
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38673
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 611
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1480
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40307
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6841
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.879999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.727e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: -2.51e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

DP
type: SiteQuality
SIO_000300: 1.525605e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

QD
type: SiteQuality
SIO_000300: 1.912e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000532328
gene symbol: TM7SF2
hgvsc: ENST00000532328.1:n.17T>G
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000435972
ensembl transcript: ENST00000524986
gene symbol: TM7SF2
hgvsc: ENST00000524986.1:c.385T>G
hgvsp: ENSP00000435972.1:p.Ser129Ala
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000529233
gene symbol: TM7SF2
hgvsc: ENST00000529233.1:n.180T>G
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5428
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 611
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11888
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 881
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38672
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1480
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2575
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40294
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3042
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.49e-1

FS
type: SiteQuality
SIO_000300: 1.473e0

MQRankSum
type: SiteQuality
SIO_000300: -1.11e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
SIO_000300: 1.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.027e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

DP
type: SiteQuality
SIO_000300: 1.525551e6

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000433275
ensembl transcript: ENST00000529414
gene symbol: TM7SF2
hgvsc: ENST00000529414.1:c.474G>C
hgvsp: ENST00000529414.1:c.474G>C(p.%3D)
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000436370
ensembl transcript: ENST00000529292
gene symbol: TM7SF2
hgvsc: ENST00000529292.1:c.304+524G>C
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000529233
gene symbol: TM7SF2
hgvsc: ENST00000529233.1:n.182G>C
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 5429
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38644
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 38
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 55
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 310
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11909
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 612
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1483
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 883
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6842
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3252
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40297
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2574
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.36e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.3423e1

VQSLOD
type: SiteQuality
SIO_000300: -1.523e0

QD
type: SiteQuality
SIO_000300: 1.484e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.99e-1

DP
type: SiteQuality
SIO_000300: 1.525777e6

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000529233
gene symbol: TM7SF2
hgvsc: ENST00000529233.1:n.190_196delCACCTGG
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000432413
ensembl transcript: ENST00000530750
gene symbol: TM7SF2
hgvsc: ENST00000530750.1:c.305-94_305-88delCACCTGG
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000431300
ensembl transcript: ENST00000531321
gene symbol: TM7SF2
hgvsc: ENST00000531321.1:c.218-94_218-88delCACCTGG
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 1486
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 38627
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 887
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 310
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 445
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 56
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 613
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11920
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5426
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3043
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40289
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6841
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.375e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.682e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 9.031000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

MQRankSum
type: SiteQuality
SIO_000300: -8.433999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.147e1

DP
type: SiteQuality
SIO_000300: 1.526169e6

QD
type: SiteQuality
SIO_000300: 7.26e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000431300
ensembl transcript: ENST00000531321
gene symbol: TM7SF2
hgvsc: ENST00000531321.1:c.218-91C>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000531029
gene symbol: TM7SF2
hgvsc: ENST00000531029.1:n.304C>T
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000435458
ensembl transcript: ENST00000529601
gene symbol: TM7SF2
hgvsc: ENST00000529601.1:c.*160C>T
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 12
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1485
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5449
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 26
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 310
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38551
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11966
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 888
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 612
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3045
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6842
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 6.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.36e-1

DP
type: SiteQuality
SIO_000300: 1.526525e6

FS
type: SiteQuality
SIO_000300: 4.054e0

QD
type: SiteQuality
SIO_000300: 1.461e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000533766
gene symbol: TM7SF2
hgvsc: ENST00000533766.1:n.987G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000434447
ensembl transcript: ENST00000526085
gene symbol: TM7SF2
hgvsc: ENST00000526085.1:c.53-87G>A
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: 3_prime_UTR_variant
consequence: NMD_transcript_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000435458
ensembl transcript: ENST00000529601
gene symbol: TM7SF2
hgvsc: ENST00000529601.1:c.*164G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 12009
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5467
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 38488
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 445
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 613
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 887
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1496
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6863
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40227
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

DP
type: SiteQuality
SIO_000300: 1.527592e6

MQ
type: SiteQuality
SIO_000300: 5.991e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.412e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.002e0

FS
type: SiteQuality
SIO_000300: 5.590000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.765e-1

QD
type: SiteQuality
SIO_000300: 1.581e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e0

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000433325
ensembl transcript: ENST00000525385
gene symbol: TM7SF2
hgvsc: ENST00000525385.1:c.412+10dupG
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl transcript: ENST00000529233
gene symbol: TM7SF2
hgvsc: ENST00000529233.1:n.207+10dupG
variant of: http://identifiers.org/hgnc/11863

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000436370
ensembl transcript: ENST00000529292
gene symbol: TM7SF2
hgvsc: ENST00000529292.1:c.304+559dupG
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5493
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 886
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 184
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 308
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 38447
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1498
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12066
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 612
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3047
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40298
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3250
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

QD
type: SiteQuality
SIO_000300: 1.12e1

MQ
type: SiteQuality
SIO_000300: 6.04e1

DP
type: SiteQuality
SIO_000300: 1.528385e6

FS
type: SiteQuality
SIO_000300: 1.184e0

Annotation
canonical: false
consequence: NMD_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000149809
ensembl protein: ENSP00000436370
ensembl transcript: ENST00000529292
gene symbol: TM7SF2
hgvsc: ENST00000529292.1:c.304+558G>A
variant of: http://identifiers.org/hgnc/11863

GenotypeDepth
all individuals: 612
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 886
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 38425
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 111
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 46
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12075
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 51
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5500
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 183
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1503
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 309
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40264
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3254
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3048
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0