6-31555114-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555114
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555114
    reference: chr 6
allele count: 42
allele frequency: 3.461576500840669e-4
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.3+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.260G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.140+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.64+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.3+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-148+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+19G>C
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

6-31555120-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555120
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555120
    reference: chr 6
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.3+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.3+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.266G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.140+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-148+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.64+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+25G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

6-31555122-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555122
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555122
    reference: chr 6
allele count: 2
allele frequency: 1.648125257519571e-5
allele num: 121350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.3+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-148+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.64+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.140+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.268A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+27A>G
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

6-31555125-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555125
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555125
    reference: chr 6
allele count: 1
allele frequency: 8.240218860212928e-6
allele num: 121356
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.271G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.140+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.3+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.64+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-148+30G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+30G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-31555130-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555130
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555130
    reference: chr 6
allele count: 73369
allele frequency: 6.047261098198242e-1
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.3+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.140+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-148+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.3+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.276A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.64+35A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+35A>G
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 22550
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

6-31555370-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555370
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555370
    reference: chr 6
allele count: 3
allele frequency: 8.528542187855356e-5
allele num: 35176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.141-48C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+275C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.4-48C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.20-48C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+275C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+275C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+275C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+275C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-147-48C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+275C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.516C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.4-48C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.20-48C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+275C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.20-48C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.20-48C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.20-48C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+275C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.20-48C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-223C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+275C>T
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

6-31555371-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555371
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555371
    reference: chr 6
allele count: 2
allele frequency: 5.704831992697815e-5
allele num: 35058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.20-47G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.517G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+276G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+276G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+276G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.20-47G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.20-47G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.4-47G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+276G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.20-47G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-222G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.20-47G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.141-47G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+276G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+276G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+276G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+276G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.4-47G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-147-47G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+276G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.20-47G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

6-31555375-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555375
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555375
    reference: chr 6
allele count: 7
allele frequency: 1.966955153422502e-4
allele num: 35588
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+280G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+280G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-218G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+280G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.20-43G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+280G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.20-43G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+280G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.4-43G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.141-43G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+280G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.20-43G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+280G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.521G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+280G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+280G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.4-43G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-147-43G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.20-43G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+280G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.20-43G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

6-31555379-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555379
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555379
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 36270
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.525A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+284A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.20-39A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.20-39A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+284A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.20-39A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+284A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+284A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.141-39A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.4-39A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+284A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-214A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+284A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.20-39A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.20-39A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+284A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-147-39A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.20-39A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.4-39A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+284A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+284A>G
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

6-31555386-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555386
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555386
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 37450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.4-32G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+291G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+291G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.20-32G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+291G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.4-32G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+291G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+291G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+291G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.20-32G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.20-32G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.20-32G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.141-32G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+291G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.20-32G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.532G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-147-32G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+291G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.20-32G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-207G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+291G>C
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-31555392-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555392
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555392
    reference: chr 6
allele count: 15868
allele frequency: 3.114425907752699e-1
allele num: 50950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.20-26C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.20-26C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.538C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.20-26C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.20-26C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.4-26C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+297C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.20-26C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+297C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.20-26C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+297C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.20-26C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+297C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+297C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+297C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.141-26C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-147-26C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+297C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+297C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+297C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+297C>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 1901
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-31555392-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555392
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555392
    reference: chr 6
allele count: 1
allele frequency: 1.962708537782139e-5
allele num: 50950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+297C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.20-26C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.538C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.19+297C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+297C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.20-26C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.4-26C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+297C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.20-26C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.20-26C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+297C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.4-26C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+297C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.20-26C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+297C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+297C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.141-26C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-147-26C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+297C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.20-26C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-201C>T
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

http://identifiers.org/exac.variant/6-31555395-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555395
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555394
    reference: chr 6
allele count: 2
allele frequency: 3.982952961325527e-5
allele num: 50214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+302delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.20-21delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+302delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-196delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.20-21delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.543delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.20-21delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.4-21delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.20-21delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.20-21delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+302delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+302delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.20-21delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.4-21delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.20-21delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+302delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+302delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+302delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.141-21delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+302delC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+302delC
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: AC
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-31555400-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555400
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555400
    reference: chr 6
allele count: 1
allele frequency: 1.952667343591346e-5
allele num: 51212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.546G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.19+305G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.20-18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.20-18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-193G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+305G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.20-18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.20-18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+305G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.20-18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.20-18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.4-18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+305G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.141-18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.19+305G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.4-18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.19+305G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+305G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+305G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-147-18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.20-18G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

6-31555410-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555410
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555410
    reference: chr 6
allele count: 2
allele frequency: 3.6003600360036e-5
allele num: 55550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-147-8C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-311C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.4-8C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.141-8C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.556C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.4-8C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+315C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-311C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+315C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+315C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.20-8C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+315C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.20-8C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.20-8C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-311C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-183C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.20-8C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+315C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-311C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.20-8C>T
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.20-8C>T
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

6-31555421-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555421
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555421
    reference: chr 6
allele count: 2
allele frequency: 3.366776648037169e-5
allele num: 59404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.23T>C
  hgvsp: ENSP00000379408.3:p.Ile8Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+326T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.23T>C
  hgvsp: ENSP00000365261.2:p.Ile8Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.7T>C
  hgvsp: ENSP00000365270.3:p.Tyr3His
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.23T>C
  hgvsp: ENSP00000379418.2:p.Ile8Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.7T>C
  hgvsp: ENSP00000418578.1:p.Ile3Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-172T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.23T>C
  hgvsp: ENSP00000339201.4:p.Ile8Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-300T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-300T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+326T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+326T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-144T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.567T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.23T>C
  hgvsp: ENSP00000391929.2:p.Ile8Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+326T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.23T>C
  hgvsp: ENSP00000399869.1:p.Ile8Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-300T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.23T>C
  hgvsp: ENSP00000303649.7:p.Ile8Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+326T>C
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ile8Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

6-31555422-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555422
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555422
    reference: chr 6
allele count: 5
allele frequency: 8.396587626788474e-5
allele num: 59548
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+327A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.24A>G
  hgvsp: ENSP00000379408.3:p.Ile8Met
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-299A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-299A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-299A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+327A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.145A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.24A>G
  hgvsp: ENSP00000303649.7:p.Ile8Met
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.24A>G
  hgvsp: ENSP00000339201.4:p.Ile8Met
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.24A>G
  hgvsp: ENSP00000379418.2:p.Ile8Met
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.24A>G
  hgvsp: ENSP00000365261.2:p.Ile8Met
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-143A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.8A>G
  hgvsp: ENSP00000365270.3:p.Tyr3Cys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.24A>G
  hgvsp: ENSP00000399869.1:p.Ile8Met
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+327A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-171A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.8A>G
  hgvsp: ENSP00000418578.1:p.Ile3Met
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.24A>G
  hgvsp: ENSP00000391929.2:p.Ile8Met
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+327A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+327A>G
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ile8Met
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

6-31555423-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555423
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555423
    reference: chr 6
allele count: 14
allele frequency: 2.343409996317499e-4
allele num: 59742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.25T>C
  hgvsp: ENSP00000391929.2:p.Cys9Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.25T>C
  hgvsp: ENSP00000399869.1:p.Cys9Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.25T>C
  hgvsp: ENSP00000379418.2:p.Cys9Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-142T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.25T>C
  hgvsp: ENSP00000339201.4:p.Cys9Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.25T>C
  hgvsp: ENSP00000303649.7:p.Cys9Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+328T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.25T>C
  hgvsp: ENSP00000365261.2:p.Cys9Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+328T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.9T>C
  hgvsp: ENSP00000418578.1:p.Cys4Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-298T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-170T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.569T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-298T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.9T>C
  hgvsp: ENST00000376102.3:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+328T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+328T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.146T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.25T>C
  hgvsp: ENSP00000379408.3:p.Cys9Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+328T>C
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Cys9Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

6-31555423-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555423
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555422
    reference: chr 6
allele count: 1
allele frequency: 1.673864283083927e-5
allele num: 59742
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.10delG
  hgvsp: ENSP00000418578.1:p.Cys4LeufsTer88
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.26delG
  hgvsp: ENSP00000379418.2:p.Cys9LeufsTer30
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.10delG
  hgvsp: ENSP00000365270.3:p.Val4TyrfsTer110
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-169delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.26delG
  hgvsp: ENSP00000391929.2:p.Cys9LeufsTer30
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.26delG
  hgvsp: ENSP00000303649.7:p.Cys9LeufsTer82
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+329delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.26delG
  hgvsp: ENSP00000399869.1:p.Cys9LeufsTer?
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.26delG
  hgvsp: ENSP00000365261.2:p.Cys9LeufsTer30
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.26delG
  hgvsp: ENSP00000339201.4:p.Cys9LeufsTer89
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+329delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.570delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+329delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.147delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+329delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-297delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+329delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.26delG
  hgvsp: ENSP00000379408.3:p.Cys9LeufsTer67
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-141delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-297delG
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Cys9LeufsTer30
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: TG
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

6-31555424-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555424
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555424
    reference: chr 6
allele count: 1
allele frequency: 1.672800267648043e-5
allele num: 59780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.26G>C
  hgvsp: ENSP00000391929.2:p.Cys9Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.570G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.10G>C
  hgvsp: ENSP00000365270.3:p.Val4Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-169G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-297G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.26G>C
  hgvsp: ENSP00000339201.4:p.Cys9Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-141G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+329G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+329G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.10G>C
  hgvsp: ENSP00000418578.1:p.Cys4Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+329G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.26G>C
  hgvsp: ENSP00000379418.2:p.Cys9Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-297G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.26G>C
  hgvsp: ENSP00000365261.2:p.Cys9Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.26G>C
  hgvsp: ENSP00000399869.1:p.Cys9Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.26G>C
  hgvsp: ENSP00000379408.3:p.Cys9Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.26G>C
  hgvsp: ENSP00000303649.7:p.Cys9Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.147G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+329G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-297G>C
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Cys9Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-31555426-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555426
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555426
    reference: chr 6
allele count: 3
allele frequency: 4.968532626697582e-5
allele num: 60380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+331A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.12A>G
  hgvsp: ENST00000376102.3:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+331A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+331A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.28A>G
  hgvsp: ENSP00000339201.4:p.Ile10Val
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.28A>G
  hgvsp: ENSP00000399869.1:p.Ile10Val
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-295A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.28A>G
  hgvsp: ENSP00000391929.2:p.Ile10Val
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-167A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.28A>G
  hgvsp: ENSP00000365261.2:p.Ile10Val
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.28A>G
  hgvsp: ENSP00000303649.7:p.Ile10Val
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+331A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+331A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.12A>G
  hgvsp: ENSP00000418578.1:p.Ile5Val
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.28A>G
  hgvsp: ENSP00000379418.2:p.Ile10Val
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.28A>G
  hgvsp: ENSP00000379408.3:p.Ile10Val
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-139A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+331A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-295A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-295A>G
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ile10Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-31555431-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555431
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555431
    reference: chr 6
allele count: 13
allele frequency: 2.12752029327049e-4
allele num: 61104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.33C>A
  hgvsp: ENSP00000365261.2:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.33C>A
  hgvsp: ENSP00000339201.4:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+336C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.154C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.33C>A
  hgvsp: ENSP00000379408.3:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-290C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+336C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+336C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.33C>A
  hgvsp: ENSP00000379418.2:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-290C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+336C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.17C>A
  hgvsp: ENSP00000418578.1:p.Tyr6Ter
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.33C>A
  hgvsp: ENSP00000303649.7:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.33C>A
  hgvsp: ENSP00000399869.1:p.Tyr11Ter
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.577C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.17C>A
  hgvsp: ENSP00000365270.3:p.Thr6Lys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-162C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+336C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+336C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-134C>A
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Tyr11Ter
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

6-31555432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555432
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555432
    reference: chr 6
allele count: 1
allele frequency: 1.600922131147541e-5
allele num: 62464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.18G>A
  hgvsp: ENSP00000418578.1:p.Gly7Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+337G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-289G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-133G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.578G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.34G>A
  hgvsp: ENSP00000303649.7:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.34G>A
  hgvsp: ENSP00000379418.2:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-289G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.34G>A
  hgvsp: ENSP00000391929.2:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.34G>A
  hgvsp: ENSP00000339201.4:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-161G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.18G>A
  hgvsp: ENST00000376102.3:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.34G>A
  hgvsp: ENSP00000365261.2:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.34G>A
  hgvsp: ENSP00000399869.1:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+337G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.34G>A
  hgvsp: ENSP00000379408.3:p.Gly12Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+337G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+337G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+337G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-289G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly12Arg
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-31555436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555436
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555436
    reference: chr 6
allele count: 5
allele frequency: 7.857434704717604e-5
allele num: 63634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-285G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+341G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.582G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.22G>A
  hgvsp: ENSP00000365270.3:p.Ala8Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.38G>A
  hgvsp: ENSP00000303649.7:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.38G>A
  hgvsp: ENSP00000391929.2:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.38G>A
  hgvsp: ENSP00000379408.3:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.38G>A
  hgvsp: ENSP00000379418.2:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+341G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-285G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.38G>A
  hgvsp: ENSP00000339201.4:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.38G>A
  hgvsp: ENSP00000365261.2:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-129G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.159G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.38G>A
  hgvsp: ENSP00000399869.1:p.Gly13Asp
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+341G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.22G>A
  hgvsp: ENSP00000418578.1:p.Gly8Asp
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+341G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+341G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+341G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly13Asp
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

6-31555436-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555436
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555436
    reference: chr 6
allele count: 1
allele frequency: 1.571486940943521e-5
allele num: 63634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.38G>C
  hgvsp: ENSP00000379408.3:p.Gly13Ala
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-129G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.22G>C
  hgvsp: ENSP00000418578.1:p.Gly8Ala
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+341G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.159G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.38G>C
  hgvsp: ENSP00000365261.2:p.Gly13Ala
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-285G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.38G>C
  hgvsp: ENSP00000391929.2:p.Gly13Ala
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.38G>C
  hgvsp: ENSP00000379418.2:p.Gly13Ala
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-285G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.38G>C
  hgvsp: ENSP00000303649.7:p.Gly13Ala
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+341G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.38G>C
  hgvsp: ENSP00000399869.1:p.Gly13Ala
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.38G>C
  hgvsp: ENSP00000339201.4:p.Gly13Ala
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+341G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.22G>C
  hgvsp: ENSP00000365270.3:p.Ala8Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+341G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.582G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-285G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+341G>C
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly13Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

6-31555439-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555439
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555439
    reference: chr 6
allele count: 1
allele frequency: 1.559527151367705e-5
allele num: 64122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+344T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+344T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.41T>G
  hgvsp: ENSP00000399869.1:p.Leu14Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.162T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.41T>G
  hgvsp: ENSP00000379408.3:p.Leu14Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-126T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-282T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+344T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.41T>G
  hgvsp: ENSP00000379418.2:p.Leu14Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.25T>G
  hgvsp: ENSP00000365270.3:p.Trp9Gly
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.25T>G
  hgvsp: ENSP00000418578.1:p.Leu9Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.41T>G
  hgvsp: ENSP00000339201.4:p.Leu14Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.41T>G
  hgvsp: ENSP00000365261.2:p.Leu14Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-282T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+344T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.585T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+344T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-282T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.41T>G
  hgvsp: ENSP00000391929.2:p.Leu14Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.41T>G
  hgvsp: ENSP00000303649.7:p.Leu14Arg
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu14Arg
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

6-31555440-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555440
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555440
    reference: chr 6
allele count: 8
allele frequency: 1.244903675578102e-4
allele num: 64262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.42G>C
  hgvsp: ENST00000303757.8:c.42G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-281G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.42G>C
  hgvsp: ENST00000433492.1:c.42G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.42G>C
  hgvsp: ENST00000396101.3:c.42G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.42G>C
  hgvsp: ENST00000376093.2:c.42G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.42G>C
  hgvsp: ENST00000438075.2:c.42G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+345G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-281G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.26G>C
  hgvsp: ENST00000490742.1:c.26G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-281G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.42G>C
  hgvsp: ENST00000339530.4:c.42G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-125G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.26G>C
  hgvsp: ENSP00000365270.3:p.Trp9Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-153G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.163G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.42G>C
  hgvsp: ENST00000396112.2:c.42G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+345G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+345G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+345G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.586G>C
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Trp9Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

6-31555442-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555442
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555442
    reference: chr 6
allele count: 1
allele frequency: 1.550147263990079e-5
allele num: 64510
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+347G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-123G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.44G>A
  hgvsp: ENSP00000365261.2:p.Gly15Glu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+347G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.44G>A
  hgvsp: ENSP00000303649.7:p.Gly15Glu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+347G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.28G>A
  hgvsp: ENSP00000418578.1:p.Gly10Glu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-151G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.28G>A
  hgvsp: ENSP00000365270.3:p.Gly10Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.44G>A
  hgvsp: ENSP00000339201.4:p.Gly15Glu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.588G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-279G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.44G>A
  hgvsp: ENSP00000379408.3:p.Gly15Glu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.165G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.44G>A
  hgvsp: ENSP00000379418.2:p.Gly15Glu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+347G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.44G>A
  hgvsp: ENSP00000399869.1:p.Gly15Glu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-279G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+347G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-279G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly15Glu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD

6-31555443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555443
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555443
    reference: chr 6
allele count: 69
allele frequency: 1.067516554242218e-3
allele num: 64636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.45G>A
  hgvsp: ENST00000396101.3:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.45G>A
  hgvsp: ENST00000396112.2:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.45G>A
  hgvsp: ENST00000339530.4:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.29G>A
  hgvsp: ENST00000490742.1:c.29G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.45G>A
  hgvsp: ENST00000376093.2:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.166G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.29G>A
  hgvsp: ENSP00000365270.3:p.Gly10Asp
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.45G>A
  hgvsp: ENST00000433492.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-278G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+348G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+348G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+348G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.45G>A
  hgvsp: ENST00000303757.8:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.589G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-278G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+348G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-278G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-122G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.45G>A
  hgvsp: ENST00000438075.2:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-150G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly10Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/6-31555449-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555449
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555449
    reference: chr 6
allele count: 1
allele frequency: 1.556953353677524e-5
allele num: 64228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.51C>A
  hgvsp: ENST00000438075.2:c.51C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.4C>A
  hgvsp: ENST00000464044.1:c.4C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.51C>A
  hgvsp: ENST00000339530.4:c.51C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-272C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.51C>A
  hgvsp: ENST00000433492.1:c.51C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+354C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.35C>A
  hgvsp: ENSP00000365270.3:p.Ala12Glu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.51C>A
  hgvsp: ENST00000396112.2:c.51C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-272C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.51C>A
  hgvsp: ENST00000303757.8:c.51C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-116C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-272C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.51C>A
  hgvsp: ENST00000376093.2:c.51C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.51C>A
  hgvsp: ENST00000396101.3:c.51C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+354C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+354C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.35C>A
  hgvsp: ENST00000490742.1:c.35C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-144C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.172C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.595C>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala12Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-31555449-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555449
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555449
    reference: chr 6
allele count: 4
allele frequency: 6.227813414710095e-5
allele num: 64228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.595C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-144C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+354C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-272C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.51C>T
  hgvsp: ENST00000303757.8:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.35C>T
  hgvsp: ENSP00000365270.3:p.Ala12Val
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.51C>T
  hgvsp: ENST00000438075.2:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-272C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.4C>T
  hgvsp: ENST00000464044.1:c.4C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.172C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+354C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+354C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.51C>T
  hgvsp: ENST00000376093.2:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.51C>T
  hgvsp: ENST00000396112.2:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-272C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+354C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.51C>T
  hgvsp: ENST00000339530.4:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.51C>T
  hgvsp: ENST00000396101.3:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-116C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+354C>T
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala12Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP

6-31555450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555450
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555450
    reference: chr 6
allele count: 6
allele frequency: 9.260688377836085e-5
allele num: 64790
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.36G>A
  hgvsp: ENSP00000418578.1:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.52G>A
  hgvsp: ENSP00000391929.2:p.Gly18Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-143G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.36G>A
  hgvsp: ENST00000376102.3:c.36G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+355G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.52G>A
  hgvsp: ENSP00000303649.7:p.Gly18Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+355G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+355G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-271G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.173G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.596G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.52G>A
  hgvsp: ENSP00000379418.2:p.Gly18Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.52G>A
  hgvsp: ENSP00000399869.1:p.Gly18Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.52G>A
  hgvsp: ENSP00000379408.3:p.Gly18Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+355G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.52G>A
  hgvsp: ENSP00000365261.2:p.Gly18Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-271G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.52G>A
  hgvsp: ENSP00000339201.4:p.Gly18Arg
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-115G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+355G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gly18Arg
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

6-31555454-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555454
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555454
    reference: chr 6
allele count: 1
allele frequency: 1.548610896026264e-5
allele num: 64574
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-111T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-267T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+359T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-267T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+359T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.9T>C
  hgvsp: ENSP00000417645.1:p.Leu4Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.56T>C
  hgvsp: ENSP00000399869.1:p.Leu19Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.56T>C
  hgvsp: ENSP00000379408.3:p.Leu19Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.56T>C
  hgvsp: ENSP00000303649.7:p.Leu19Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-139T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.56T>C
  hgvsp: ENSP00000391929.2:p.Leu19Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-267T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.40T>C
  hgvsp: ENSP00000365270.3:p.Ser14Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+359T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.56T>C
  hgvsp: ENSP00000365261.2:p.Leu19Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.177T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+359T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.56T>C
  hgvsp: ENSP00000339201.4:p.Leu19Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+359T>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-267T>C
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Leu19Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-31555482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555482
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555482
    reference: chr 6
allele count: 1
allele frequency: 1.598414372942042e-5
allele num: 62562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-239C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.68C>T
  hgvsp: ENSP00000365270.3:p.Pro23Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+387C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-239C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.84C>T
  hgvsp: ENST00000396101.3:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.84C>T
  hgvsp: ENST00000376093.2:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.84C>T
  hgvsp: ENST00000339530.4:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.84C>T
  hgvsp: ENST00000438075.2:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.84C>T
  hgvsp: ENST00000303757.8:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.628C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+387C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.84C>T
  hgvsp: ENST00000396112.2:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.68C>T
  hgvsp: ENST00000490742.1:c.68C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+387C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+387C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.37C>T
  hgvsp: ENST00000464044.1:c.37C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-239C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+387C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.205C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-83C>T
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Pro23Leu
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

6-31555483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555483
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555483
    reference: chr 6
allele count: 5
allele frequency: 9.866214136311614e-5
allele num: 50678
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-238G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+388G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-238G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.85G>A
  hgvsp: ENSP00000391929.2:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+388G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.85G>A
  hgvsp: ENSP00000379408.3:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.85G>A
  hgvsp: ENSP00000339201.4:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.69G>A
  hgvsp: ENST00000376102.3:c.69G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.69G>A
  hgvsp: ENSP00000418578.1:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.85G>A
  hgvsp: ENSP00000379418.2:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.38G>A
  hgvsp: ENSP00000417645.1:p.Ala14Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.85G>A
  hgvsp: ENSP00000365261.2:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+388G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.85G>A
  hgvsp: ENSP00000303649.7:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.629G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.85G>A
  hgvsp: ENSP00000399869.1:p.Ala29Thr
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+388G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-110G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.206G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+388G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala29Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-31555483-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555483
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555483
    reference: chr 6
allele count: 9
allele frequency: 1.775918544536091e-4
allele num: 50678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.206G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.85G>C
  hgvsp: ENSP00000303649.7:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.85G>C
  hgvsp: ENSP00000379408.3:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+388G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.85G>C
  hgvsp: ENSP00000339201.4:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.38G>C
  hgvsp: ENSP00000417645.1:p.Ala14Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-238G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-238G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-238G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-82G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+388G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.69G>C
  hgvsp: ENST00000376102.3:c.69G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.69G>C
  hgvsp: ENSP00000418578.1:p.Ala24Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.85G>C
  hgvsp: ENSP00000379418.2:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+388G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.85G>C
  hgvsp: ENSP00000399869.1:p.Ala29Pro
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+388G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-238G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+388G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-110G>C
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala29Pro
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

6-31555483-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555483
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555483
    reference: chr 6
allele count: 62
allele frequency: 1.22341055290264e-3
allele num: 50678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-238G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+388G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.85G>T
  hgvsp: ENSP00000391929.2:p.Ala29Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.69G>T
  hgvsp: ENSP00000418578.1:p.Ala24Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.38G>T
  hgvsp: ENSP00000417645.1:p.Ala14Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.85G>T
  hgvsp: ENSP00000399869.1:p.Ala29Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.69G>T
  hgvsp: ENST00000376102.3:c.69G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+388G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.629G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.85G>T
  hgvsp: ENSP00000379408.3:p.Ala29Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.206G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.85G>T
  hgvsp: ENSP00000365261.2:p.Ala29Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-82G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-238G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-238G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+388G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+388G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.85G>T
  hgvsp: ENSP00000379418.2:p.Ala29Ser
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+388G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.85G>T
  hgvsp: ENSP00000303649.7:p.Ala29Ser
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Ala29Ser
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

6-31555505-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555505
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555505
    reference: chr 6
allele count: 1
allele frequency: 1.745749100939213e-5
allele num: 57282
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.60G>A
  hgvsp: ENSP00000417645.1:p.Arg21Gln
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.107G>A
  hgvsp: ENSP00000379408.3:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.91G>A
  hgvsp: ENSP00000418578.1:p.Arg31Gln
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.91G>A
  hgvsp: ENSP00000365270.3:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-216G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.228G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.107G>A
  hgvsp: ENSP00000339201.4:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.107G>A
  hgvsp: ENSP00000365261.2:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.107G>A
  hgvsp: ENSP00000391929.2:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.651G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-88G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+410G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+410G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.107G>A
  hgvsp: ENSP00000379418.2:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-60G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.107G>A
  hgvsp: ENSP00000303649.7:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+410G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+410G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+410G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.107G>A
  hgvsp: ENSP00000399869.1:p.Arg36Gln
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg36Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

6-31555505-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555505
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555505
    reference: chr 6
allele count: 1
allele frequency: 1.745749100939213e-5
allele num: 57282
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.107G>T
  hgvsp: ENSP00000365261.2:p.Arg36Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.107G>T
  hgvsp: ENSP00000339201.4:p.Arg36Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.60G>T
  hgvsp: ENSP00000417645.1:p.Arg21Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.91G>T
  hgvsp: ENSP00000418578.1:p.Arg31Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+410G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000399869
  ensembl transcript: ENST00000433492
  gene symbol: LST1
  hgvsc: ENST00000433492.1:c.107G>T
  hgvsp: ENSP00000399869.1:p.Arg36Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.651G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.107G>T
  hgvsp: ENSP00000379408.3:p.Arg36Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+410G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-216G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+410G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.91G>T
  hgvsp: ENSP00000365270.3:p.Glu31Ter
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+410G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.107G>T
  hgvsp: ENSP00000303649.7:p.Arg36Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.107G>T
  hgvsp: ENSP00000391929.2:p.Arg36Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-216G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.228G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.107G>T
  hgvsp: ENSP00000379418.2:p.Arg36Leu
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+410G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-88G>T
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu31Ter
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

6-31555516-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555516
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555516
    reference: chr 6
allele count: 1
allele frequency: 2.05862977602108e-5
allele num: 48576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+421C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.96+6C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-77C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+6C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+6C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.112+6C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+421C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-205C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+6C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.233+6C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-55+6C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-205C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.112+6C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-205C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+421C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.112+6C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+6C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+421C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+421C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.662C>T
  variant of: http://identifiers.org/hgnc/14189
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: c.112+6C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-31555524-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555524
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555524
    reference: chr 6
allele count: 4
allele frequency: 1.018796800978045e-4
allele num: 39262
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+429T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-197T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.65+14T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+14T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.112+14T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.233+14T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+14T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-55+14T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+429T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+429T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+429T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+429T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.112+14T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-197T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+14T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-69T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-197T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.670T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+14T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-197T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.96+14T>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/6-31555533-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555533
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555533
    reference: chr 6
allele count: 2
allele frequency: 7.1571714858288e-5
allele num: 27944
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+23C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+438C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+23C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-188C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-188C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+438C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.112+23C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+23C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+438C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.96+23C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.65+23C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+438C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+23C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.233+23C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.679C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+438C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+438C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.112+23C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-60C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-188C>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.112+23C>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

6-31555538-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555538
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555538
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 24060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+28T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.96+28T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+443T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+443T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+28T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  hgvsc: ENST00000419073.1:n.233+28T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-183T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+28T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.65+28T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+443T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-183T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.65-55T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-183T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+443T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+443T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.112+28T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+28T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.684T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-183T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.112+28T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-55+28T>G
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

6-31555544-AGTGCCCCCT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555544
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555535
    reference: chr 6
allele count: 2
allele frequency: 9.10995718320124e-5
allele num: 21954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.699_707delTGTGCCCCC
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000419073
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: AGTGCCCCCT
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

6-31555671-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555671
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555671
    reference: chr 6
allele count: 3
allele frequency: 2.719115381129339e-5
allele num: 110330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+576C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+161C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+161C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+161C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+161C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+576C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-50C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.143C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-50C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.817C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.113-50C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.113-50C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.97-55C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-50C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+576C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-50C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+576C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+576C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-54-50C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.66-55C>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+576C>T
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

6-31555672-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555672
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555672
    reference: chr 6
allele count: 1
allele frequency: 9.052395263786798e-6
allele num: 110468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.113-49G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.66-54G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+162G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.144G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-49G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.19+577G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.19+577G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-49G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-49G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+162G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+577G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-49G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+162G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+577G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.818G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+162G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+577G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.97-54G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.113-49G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-54-49G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+577G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

6-31555694-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555694
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555693
    reference: chr 6
allele count: 1
allele frequency: 8.979885057471264e-6
allele num: 111360
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+185delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.167delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-579delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-26delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.19+600delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.19+600delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-54-26delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+185delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+185delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.66-31delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.841delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.97-31delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-26delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-26delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.19+600delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+185delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.113-26delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-26delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-579delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.113-26delG
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.113-26delG
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: TG
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

6-31555699-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555699
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555699
    reference: chr 6
allele count: 1
allele frequency: 8.960894655722427e-6
allele num: 111596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-596T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+189T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.20-22T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.113-22T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-596T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.66-27T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.97-27T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.171T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-22T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+604T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-575T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-54-22T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+189T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.845T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+189T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+189T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.113-22T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.20-596T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.113-22T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-22T>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-575T>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

6-31555705-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555705
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555705
    reference: chr 6
allele count: 3
allele frequency: 2.683075161878868e-5
allele num: 111812
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.20-590T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.20-16T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-590T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-569T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-590T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+195T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.20-16T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.113-16T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+195T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.20-16T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+195T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.113-16T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.66-21T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.177T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.97-21T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-54-16T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.19+610T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.851T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-569T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+195T>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.113-16T>G
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

6-31555734-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555734
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555734
    reference: chr 6
allele count: 1
allele frequency: 8.917901796065422e-6
allele num: 112134
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+224G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+224G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.206G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.33G>A
  hgvsp: ENST00000418507.2:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-41G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-540G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-561G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.126G>A
  hgvsp: ENST00000396112.2:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.126G>A
  hgvsp: ENST00000376093.2:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-540G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.74G>A
  hgvsp: ENSP00000417645.1:p.Glu26Lys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.33G>A
  hgvsp: ENST00000376089.2:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.126G>A
  hgvsp: ENST00000438075.2:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.105G>A
  hgvsp: ENSP00000418578.1:p.Glu36Lys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+224G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-561G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.33G>A
  hgvsp: ENST00000376086.3:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.33G>A
  hgvsp: ENST00000376110.3:c.33G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.880G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.20-606G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu36Lys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

6-31555743-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555743
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555743
    reference: chr 6
allele count: 1
allele frequency: 8.930325599671364e-6
allele num: 111978
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.135G>T
  hgvsp: ENSP00000365261.2:p.Trp45Cys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.135G>T
  hgvsp: ENSP00000391929.2:p.Trp45Cys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+233G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.42G>T
  hgvsp: ENSP00000365254.3:p.Trp14Cys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-531G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.42G>T
  hgvsp: ENSP00000365257.2:p.Trp14Cys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.114G>T
  hgvsp: ENSP00000418578.1:p.Gly39Cys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-552G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.215G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-32G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.83G>T
  hgvsp: ENSP00000417645.1:p.Glu29Ter
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.42G>T
  hgvsp: ENSP00000405900.2:p.Trp14Cys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+233G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-552G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.889G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.20-552G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-531G>T
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.135G>T
  hgvsp: ENSP00000379418.2:p.Trp45Cys
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.20-597G>T
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Glu29Ter
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

6-31555761-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555761
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555761
    reference: chr 6
allele count: 1
allele frequency: 8.98375736668104e-6
allele num: 111312
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.135+18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-513G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.42+18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.135+18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-534G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.42+18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+251G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.20-579G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.907G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.135+18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.114+18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-32+18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-513G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.42+18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+251G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.83+18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-534G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.20-534G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+251G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.215+18G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.42+18G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

6-31555762-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555762
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555762
    reference: chr 6
allele count: 1
allele frequency: 8.98811770838951e-6
allele num: 111258
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.20-533A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+252A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.908A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.215+19A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.42+19A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.42+19A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.42+19A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.135+19A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-512A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-533A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+252A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+252A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.42+19A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-533A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+252A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-512A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.135+19A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.114+19A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.20-578A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-32+19A>G
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.83+19A>G
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-31555763-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555763
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555763
    reference: chr 6
allele count: 2
allele frequency: 1.798561151079137e-5
allele num: 111200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-532A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+253A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.20-577A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.215+20A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+253A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.135+20A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.42+20A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.135+20A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-532A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-511A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.135+20A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.42+20A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.42+20A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.42+20A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+253A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+253A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.909A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.83+20A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.20-532A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-32+20A>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.114+20A>C
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

6-31555764-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555764
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555764
    reference: chr 6
allele count: 1
allele frequency: 8.994099870484962e-6
allele num: 111184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.42+21G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-510G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.42+21G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+254G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.215+21G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.910G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.114+21G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-531G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-531G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+254G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+254G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.42+21G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.83+21G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-510G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-32+21G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.20-576G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.42+21G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.135+21G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.20-531G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.135+21G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+254G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

6-31555764-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555764
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555764
    reference: chr 6
allele count: 1
allele frequency: 8.994099870484962e-6
allele num: 111184
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.135+21G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.910G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.135+21G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.135+21G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.42+21G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-531G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+254G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.42+21G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.42+21G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-510G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+254G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.114+21G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+254G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-531G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.83+21G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-510G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+254G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-32+21G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.20-531G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.215+21G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.42+21G>C
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

6-31555765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555765
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555765
    reference: chr 6
allele count: 1
allele frequency: 8.994585259673677e-6
allele num: 111178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-509G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+255G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-509G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-530G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.135+22G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.42+22G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.135+22G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.135+22G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.42+22G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+255G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.114+22G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.911G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.83+22G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+255G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.20-575G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.42+22G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-530G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.20-530G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.215+22G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.42+22G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-32+22G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

6-31555765-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555765
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555765
    reference: chr 6
allele count: 84
allele frequency: 7.555451618125889e-4
allele num: 111178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379408
  ensembl transcript: ENST00000396101
  gene symbol: LST1
  hgvsc: ENST00000396101.3:c.112+255G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.135+22G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+255G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-530G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000211921
  ensembl transcript: ENST00000211921
  gene symbol: LST1
  hgvsc: ENST00000211921.7:c.20-530G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.135+22G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000460834
  gene symbol: LST1
  hgvsc: ENST00000460834.1:n.215+22G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365258
  ensembl transcript: ENST00000376090
  gene symbol: LST1
  hgvsc: ENST00000376090.2:c.20-530G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-32+22G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000405900
  ensembl transcript: ENST00000418507
  gene symbol: LST1
  hgvsc: ENST00000418507.2:c.42+22G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365264
  ensembl transcript: ENST00000376096
  gene symbol: LST1
  hgvsc: ENST00000376096.1:c.20-575G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.42+22G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-509G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365254
  ensembl transcript: ENST00000376086
  gene symbol: LST1
  hgvsc: ENST00000376086.3:c.42+22G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+255G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.83+22G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.911G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000303649
  ensembl transcript: ENST00000303757
  gene symbol: LST1
  hgvsc: ENST00000303757.8:c.112+255G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.135+22G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.42+22G>C
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.114+22G>C
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

6-31555767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31555767
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31555767
    reference: chr 6
allele count: 1
allele frequency: 9.00284489898808e-6
allele num: 111076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000417645
  ensembl transcript: ENST00000464044
  gene symbol: LST1
  hgvsc: ENST00000464044.1:c.83+24G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365260
  ensembl transcript: ENST00000376092
  gene symbol: LST1
  hgvsc: ENST00000376092.3:c.20-507G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204482
  ensembl transcript: ENST00000464526
  gene symbol: LST1
  hgvsc: ENST00000464526.1:n.913G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000339201
  ensembl transcript: ENST00000339530
  gene symbol: LST1
  hgvsc: ENST00000339530.4:c.112+257G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365257
  ensembl transcript: ENST00000376089
  gene symbol: LST1
  hgvsc: ENST00000376089.2:c.42+24G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000418578
  ensembl transcript: ENST00000490742
  gene symbol: LST1
  hgvsc: ENST00000490742.1:c.114+24G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365279
  ensembl transcript: ENST00000376111
  gene symbol: LST1
  hgvsc: ENST00000376111.4:c.-32+24G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365261
  ensembl transcript: ENST00000376093
  gene symbol: LST1
  hgvsc: ENST00000376093.2:c.135+24G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365267
  ensembl transcript: ENST00000376099
  gene symbol: LST1
  hgvsc: ENST00000376099.1:c.20-528G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000391929
  ensembl transcript: ENST00000438075
  gene symbol: LST1
  hgvsc: ENST00000438075.2:c.135+24G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000379418
  ensembl transcript: ENST00000396112
  gene symbol: LST1
  hgvsc: ENST00000396112.2:c.135+24G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365270
  ensembl transcript: ENST00000376102
  gene symbol: LST1
  hgvsc: ENST00000376102.3:c.96+257G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365278
  ensembl transcript: ENST00000376110
  gene symbol: LST1
  hgvsc: ENST00000376110.3:c.42+24G>A
  variant of: http://identifiers.org/hgnc/14189
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204482
  ensembl protein: ENSP00000365268
  ensembl transcript: ENST00000376100
  gene symbol: LST1
  hgvsc: ENST00000376100.3:c.20-507G>A
  variant of: http://identifiers.org/hgnc/14189
canonical: false
consequence: non coding transcript exon
filter: PASS
num of homozygotes: 0
reference allele: G

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000399869
ensembl transcript: ENST00000433492
gene symbol: LST1
hgvsc: ENST00000433492.1:c.19+19G>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365258
ensembl transcript: ENST00000376090
gene symbol: LST1
hgvsc: ENST00000376090.2:c.19+19G>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 226
bin: 8.75e1
variant carriers: 4

GenotypeDepth
all individuals: 1419
bin: 4.75e1
variant carriers: 2

GenotypeDepth
all individuals: 278
bin: 8.25e1
variant carriers: 4

GenotypeDepth
all individuals: 11858
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 549
bin: 6.75e1
variant carriers: 4

GenotypeDepth
all individuals: 2874
bin: 3.75e1
variant carriers: 3

GenotypeDepth
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6978
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 938
bin: 5.75e1
variant carriers: 2

GenotypeDepth
all individuals: 436
bin: 7.25e1
variant carriers: 7

GenotypeDepth
all individuals: 719
bin: 6.25e1
variant carriers: 4

GenotypeDepth
all individuals: 1472
bin: 9.75e1
variant carriers: 5

GenotypeDepth
all individuals: 320
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 29227
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1931
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1190
bin: 5.25e1
variant carriers: 2

GenotypeDepth
all individuals: 166
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11544
bin: 9.75e1
variant carriers: 42

GenotypeQuality
all individuals: 7304
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3443
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27061
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.729804532087874e-4
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 3.848374061958823e-3
allele num: 10394
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.947839e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.606e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.358e1

VQSLOD
type: SiteQuality
SIO_000300: 4.45e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000211921
ensembl transcript: ENST00000211921
gene symbol: LST1
hgvsc: ENST00000211921.7:c.19+25G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000379418
ensembl transcript: ENST00000396112
gene symbol: LST1
hgvsc: ENST00000396112.2:c.19+25G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 2880
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 431
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 325
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1936
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 722
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6994
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1194
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 940
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1422
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1471
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 166
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 551
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11872
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4412
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11551
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

QD
type: SiteQuality
SIO_000300: 1.91e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.118e0

DP
type: SiteQuality
SIO_000300: 1.948494e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365260
ensembl transcript: ENST00000376092
gene symbol: LST1
hgvsc: ENST00000376092.3:c.19+27A>G
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365270
ensembl transcript: ENST00000376102
gene symbol: LST1
hgvsc: ENST00000376102.3:c.3+27A>G
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2883
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 722
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1195
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1937
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1423
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11888
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6997
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1471
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 324
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 29165
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 941
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 552
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1599
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3452
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27006
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4417
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11563
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.997961386257345e-5
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.89e-1

DP
type: SiteQuality
SIO_000300: 1.94897e6

VQSLOD
type: SiteQuality
SIO_000300: -8.589e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.099e0

FS
type: SiteQuality
SIO_000300: 3.017e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.833e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365278
ensembl transcript: ENST00000376110
gene symbol: LST1
hgvsc: ENST00000376110.3:c.19+30G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000418578
ensembl transcript: ENST00000490742
gene symbol: LST1
hgvsc: ENST00000490742.1:c.3+30G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11902
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 552
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1471
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2887
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1195
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1937
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1423
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 166
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 277
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 722
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7010
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29135
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 941
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26967
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7313
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.937e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.949301e6

FS
type: SiteQuality
SIO_000300: 1.854e0

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.579e0

QD
type: SiteQuality
SIO_000300: 2.309e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.878e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.11e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.19+35A>G
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365261
ensembl transcript: ENST00000376093
gene symbol: LST1
hgvsc: ENST00000376093.2:c.19+35A>G
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 2618
bin: 2.75e1
variant carriers: 585

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4209
bin: 5.25e1
variant carriers: 4044

GenotypeDepth
all individuals: 4784
bin: 5.75e1
variant carriers: 4660

GenotypeDepth
all individuals: 2012
bin: 9.25e1
variant carriers: 1985

GenotypeDepth
all individuals: 2417
bin: 3.75e1
variant carriers: 1883

GenotypeDepth
all individuals: 4789
bin: 2.25e1
variant carriers: 187

GenotypeDepth
all individuals: 5
bin: 7.5e0
variant carriers: 3

GenotypeDepth
all individuals: 2907
bin: 4.25e1
variant carriers: 2578

GenotypeDepth
all individuals: 7930
bin: 9.75e1
variant carriers: 7698

GenotypeDepth
all individuals: 3166
bin: 8.25e1
variant carriers: 3122

GenotypeDepth
all individuals: 19
bin: 1.25e1
variant carriers: 16

GenotypeDepth
all individuals: 3766
bin: 7.75e1
variant carriers: 3719

GenotypeDepth
all individuals: 4299
bin: 7.25e1
variant carriers: 4236

GenotypeDepth
all individuals: 4523
bin: 6.75e1
variant carriers: 4447

GenotypeDepth
all individuals: 2369
bin: 3.25e1
variant carriers: 1138

GenotypeDepth
all individuals: 2440
bin: 8.75e1
variant carriers: 2412

GenotypeDepth
all individuals: 3595
bin: 4.75e1
variant carriers: 3387

GenotypeDepth
all individuals: 80
bin: 1.75e1
variant carriers: 59

GenotypeDepth
all individuals: 4778
bin: 6.25e1
variant carriers: 4678

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 28

GenotypeQuality
all individuals: 582
bin: 7.25e1
variant carriers: 49

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1307
bin: 6.75e1
variant carriers: 80

GenotypeQuality
all individuals: 11
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 37

GenotypeQuality
all individuals: 862
bin: 7.75e1
variant carriers: 115

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 12

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 17

GenotypeQuality
all individuals: 4312
bin: 6.25e1
variant carriers: 43

GenotypeQuality
all individuals: 585
bin: 9.25e1
variant carriers: 207

GenotypeQuality
all individuals: 764
bin: 8.25e1
variant carriers: 158

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 16

GenotypeQuality
all individuals: 422
bin: 8.75e1
variant carriers: 122

GenotypeQuality
all individuals: 51567
bin: 9.75e1
variant carriers: 49914

Latino
type: Population
allele count: 5797
allele frequency: 5.012971290211e-1
allele num: 11564
num of homozygotes: 1460

African
type: Population
allele count: 6726
allele frequency: 6.466064218419535e-1
allele num: 10402
num of homozygotes: 2155

East Asian
type: Population
allele count: 6434
allele frequency: 7.445035871326082e-1
allele num: 8642
num of homozygotes: 2394

European (Finnish)
type: Population
allele count: 3592
allele frequency: 5.439127801332526e-1
allele num: 6604
num of homozygotes: 985

European (Non-Finnish)
type: Population
allele count: 38743
allele frequency: 5.808371563071572e-1
allele num: 66702
num of homozygotes: 11327

South Asian
type: Population
allele count: 11560
allele frequency: 7.004362578768784e-1
allele num: 16504
num of homozygotes: 4085

Other
type: Population
allele count: 517
allele frequency: 5.693832599118943e-1
allele num: 908
num of homozygotes: 144

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-2

DP
type: SiteQuality
SIO_000300: 3.982393e6

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

QD
type: SiteQuality
SIO_000300: 2.206e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365258
ensembl transcript: ENST00000376090
gene symbol: LST1
hgvsc: ENST00000376090.2:c.19+275C>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000303649
ensembl transcript: ENST00000303757
gene symbol: LST1
hgvsc: ENST00000303757.8:c.20-48C>T
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 2520
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12712
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 30556
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11601
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 733
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 349
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1080
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 194
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5566
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8998
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19283
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4778
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9155
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4457
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 150
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.019783805833163e-4
allele num: 19612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.060156571899464e-4
allele num: 4854
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.20378e5

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 1.544e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

QD
type: SiteQuality
SIO_000300: 1.67e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+276G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000379418
ensembl transcript: ENST00000396112
gene symbol: LST1
hgvsc: ENST00000396112.2:c.20-47G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 2501
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11577
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1102
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30588
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 348
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 733
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12694
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 195
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4787
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2281
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9043
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8624
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19878
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5558
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4451
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.472222222222222e-4
allele num: 2880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.04582651391162e-4
allele num: 4888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.27e-2

FS
type: SiteQuality
SIO_000300: 7.647e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 5.21651e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.026e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000379418
ensembl transcript: ENST00000396112
gene symbol: LST1
hgvsc: ENST00000396112.2:c.20-43G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000339201
ensembl transcript: ENST00000339530
gene symbol: LST1
hgvsc: ENST00000339530.4:c.20-43G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 2311
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12813
bin: 1.25e1
variant carriers: 7

GenotypeDepth
all individuals: 22
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 194
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30897
bin: 7.5e0
variant carriers: 4

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1328
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 350
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11122
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 749
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23205
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6065
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4795
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5012
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9070
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1486
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4495
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 71
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2280
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3664
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 2.543604651162791e-3
allele num: 2752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 3.11e0

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

DP
type: SiteQuality
SIO_000300: 5.30034e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.441e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+284A>G
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000379408
ensembl transcript: ENST00000396101
gene symbol: LST1
hgvsc: ENST00000396101.3:c.20-39A>G
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 31435
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 1663
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12933
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2081
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10365
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 780
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 351
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 195
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8795
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26185
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4211
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4829
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4486
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3050
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

QD
type: SiteQuality
SIO_000300: 4.71e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

DP
type: SiteQuality
SIO_000300: 5.40618e5

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000303649
ensembl transcript: ENST00000303757
gene symbol: LST1
hgvsc: ENST00000303757.8:c.20-32G>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365278
ensembl transcript: ENST00000376110
gene symbol: LST1
hgvsc: ENST00000376110.3:c.19+291G>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 32449
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 12952
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 356
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8708
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 838
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1833
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2505
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 60
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29148
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4764
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4485
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7818
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2906
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.62184e5

MQ
type: SiteQuality
SIO_000300: 5.662e1

QD
type: SiteQuality
SIO_000300: 1.985e1

VQSLOD
type: SiteQuality
SIO_000300: -5.417999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.63e-2

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000460834
gene symbol: LST1
hgvsc: ENST00000460834.1:n.65-201C>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000418578
ensembl transcript: ENST00000490742
gene symbol: LST1
hgvsc: ENST00000490742.1:c.4-26C>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 438
bin: 3.25e1
variant carriers: 239

GenotypeDepth
all individuals: 3578
bin: 2.25e1
variant carriers: 1319

GenotypeDepth
all individuals: 15797
bin: 1.25e1
variant carriers: 7624

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 3

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 9

GenotypeDepth
all individuals: 5222
bin: 1.75e1
variant carriers: 4050

GenotypeDepth
all individuals: 7
bin: 7.25e1
variant carriers: 5

GenotypeDepth
all individuals: 228
bin: 3.75e1
variant carriers: 151

GenotypeDepth
all individuals: 163
bin: 4.25e1
variant carriers: 121

GenotypeDepth
all individuals: 101
bin: 4.75e1
variant carriers: 83

GenotypeDepth
all individuals: 5662
bin: 2.5e0
variant carriers: 376

GenotypeDepth
all individuals: 27427
bin: 7.5e0
variant carriers: 5191

GenotypeDepth
all individuals: 25
bin: 6.25e1
variant carriers: 20

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1099
bin: 2.75e1
variant carriers: 451

GenotypeDepth
all individuals: 77
bin: 5.25e1
variant carriers: 56

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 6

GenotypeDepth
all individuals: 49
bin: 5.75e1
variant carriers: 34

GenotypeDepth
all individuals: 23
bin: 6.75e1
variant carriers: 18

GenotypeQuality
all individuals: 348
bin: 7.25e1
variant carriers: 264

GenotypeQuality
all individuals: 523
bin: 4.25e1
variant carriers: 256

GenotypeQuality
all individuals: 692
bin: 8.75e1
variant carriers: 668

GenotypeQuality
all individuals: 4726
bin: 7.5e0
variant carriers: 187

GenotypeQuality
all individuals: 587
bin: 5.25e1
variant carriers: 462

GenotypeQuality
all individuals: 1878
bin: 1.75e1
variant carriers: 454

GenotypeQuality
all individuals: 395
bin: 7.75e1
variant carriers: 328

GenotypeQuality
all individuals: 3039
bin: 3.25e1
variant carriers: 550

GenotypeQuality
all individuals: 665
bin: 4.75e1
variant carriers: 446

GenotypeQuality
all individuals: 20692
bin: 2.25e1
variant carriers: 629

GenotypeQuality
all individuals: 3058
bin: 2.5e0
variant carriers: 75

GenotypeQuality
all individuals: 2838
bin: 6.25e1
variant carriers: 455

GenotypeQuality
all individuals: 2917
bin: 2.75e1
variant carriers: 392

GenotypeQuality
all individuals: 1648
bin: 1.25e1
variant carriers: 233

GenotypeQuality
all individuals: 1510
bin: 3.75e1
variant carriers: 451

GenotypeQuality
all individuals: 698
bin: 9.25e1
variant carriers: 679

GenotypeQuality
all individuals: 580
bin: 6.75e1
variant carriers: 327

GenotypeQuality
all individuals: 522
bin: 8.25e1
variant carriers: 479

GenotypeQuality
all individuals: 519
bin: 5.75e1
variant carriers: 441

GenotypeQuality
all individuals: 12085
bin: 9.75e1
variant carriers: 11981

South Asian
type: Population
allele count: 1167
allele frequency: 1.837795275590551e-1
allele num: 6350
num of homozygotes: 84

East Asian
type: Population
allele count: 2328
allele frequency: 4.72210953346856e-1
allele num: 4930
num of homozygotes: 453

African
type: Population
allele count: 2265
allele frequency: 4.369212962962963e-1
allele num: 5184
num of homozygotes: 394

European (Finnish)
type: Population
allele count: 540
allele frequency: 2.993348115299335e-1
allele num: 1804
num of homozygotes: 43

European (Non-Finnish)
type: Population
allele count: 7429
allele frequency: 2.715476277505666e-1
allele num: 27358
num of homozygotes: 660

Latino
type: Population
allele count: 2041
allele frequency: 4.118240516545602e-1
allele num: 4956
num of homozygotes: 256

Other
type: Population
allele count: 98
allele frequency: 2.66304347826087e-1
allele num: 368
num of homozygotes: 11

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 6.47664e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.58e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.71e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.667e1

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365261
ensembl transcript: ENST00000376093
gene symbol: LST1
hgvsc: ENST00000376093.2:c.20-26C>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.19+297C>T
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 5222
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15797
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3578
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5662
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 27427
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 163
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1099
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 101
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 438
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1648
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20692
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4726
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3058
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12085
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 395
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3039
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.655237955990935e-5
allele num: 27358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4930
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e-1

DP
type: SiteQuality
SIO_000300: 6.47664e5

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.58e-2

QD
type: SiteQuality
SIO_000300: 1.667e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365279
ensembl transcript: ENST00000376111
gene symbol: LST1
hgvsc: ENST00000376111.4:c.-147-21delC
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.19+302delC
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5842
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14616
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4497
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1343
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 388
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29061
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4195
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4080
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4730
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1507
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28796
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5265
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4751
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.414547341884777e-5
allele num: 26974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

FS
type: SiteQuality
SIO_000300: 4.459e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.406e1

DP
type: SiteQuality
SIO_000300: 6.36762e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.19+305G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365260
ensembl transcript: ENST00000376092
gene symbol: LST1
hgvsc: ENST00000376092.3:c.19+305G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 6138
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14134
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1415
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5152
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 29137
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3612
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 397
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1803
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6525
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3884
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30116
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4774
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2718
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.63002758820967e-5
allele num: 27548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.57726e5

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.578e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.6e0

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000399869
ensembl transcript: ENST00000433492
gene symbol: LST1
hgvsc: ENST00000433492.1:c.20-8C>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+315C>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000391929
ensembl transcript: ENST00000438075
gene symbol: LST1
hgvsc: ENST00000438075.2:c.20-8C>T
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12453
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 398
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10964
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 28291
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 3960
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2277
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1692
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30968
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3295
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3783
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11173
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.703703703703704e-4
allele num: 5400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7432
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 9.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

FS
type: SiteQuality
SIO_000300: 7.185e0

DP
type: SiteQuality
SIO_000300: 7.16472e5

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+326T>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000419073
gene symbol: LST1
hgvsc: ENST00000419073.1:n.144T>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365278
ensembl transcript: ENST00000376110
gene symbol: LST1
hgvsc: ENST00000376110.3:c.20-300T>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 3487
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2097
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1864
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 408
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14072
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11139
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 26967
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14058
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30409
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 190
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2863
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.217358865953743e-5
allele num: 32168
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.7e0

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -6.486e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 8.451000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.045e0

DP
type: SiteQuality
SIO_000300: 7.58119e5

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000464526
gene symbol: LST1
hgvsc: ENST00000464526.1:n.568A>G
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.20-299A>G
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365268
ensembl transcript: ENST00000376100
gene symbol: LST1
hgvsc: ENST00000376100.3:c.19+327A>G
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3485
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11138
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2151
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1888
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14090
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 410
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26863
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 981
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30285
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 897
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.550291454793501e-4
allele num: 32252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5258
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.800000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.354e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 5.629999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

DP
type: SiteQuality
SIO_000300: 7.59351e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365278
ensembl transcript: ENST00000376110
gene symbol: LST1
hgvsc: ENST00000376110.3:c.20-298T>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000211921
ensembl transcript: ENST00000211921
gene symbol: LST1
hgvsc: ENST00000211921.7:c.19+328T>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365254
ensembl transcript: ENST00000376086
gene symbol: LST1
hgvsc: ENST00000376086.3:c.20-298T>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 413
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2157
bin: 1.75e1
variant carriers: 4

GenotypeDepth
all individuals: 3468
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26806
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 14204
bin: 2.25e1
variant carriers: 4

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1872
bin: 2.75e1
variant carriers: 2

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11109
bin: 1.25e1
variant carriers: 4

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 800
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2818
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30268
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 995
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 4.327131112072696e-4
allele num: 32354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1990
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.6069e5

QD
type: SiteQuality
SIO_000300: 1.165e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

FS
type: SiteQuality
SIO_000300: 4.321e0

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365278
ensembl transcript: ENST00000376110
gene symbol: LST1
hgvsc: ENST00000376110.3:c.20-297delG
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365258
ensembl transcript: ENST00000376090
gene symbol: LST1
hgvsc: ENST00000376090.2:c.19+329delG
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.20-297delG
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 1872
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14204
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2157
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 26806
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 413
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3468
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11109
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2818
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 436
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13905
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.090807937194783e-5
allele num: 32354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

FS
type: SiteQuality
SIO_000300: 4.321e0

MQRankSum
type: SiteQuality
SIO_000300: -1.89e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

DP
type: SiteQuality
SIO_000300: 7.6069e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000211921
ensembl transcript: ENST00000211921
gene symbol: LST1
hgvsc: ENST00000211921.7:c.19+329G>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365254
ensembl transcript: ENST00000376086
gene symbol: LST1
hgvsc: ENST00000376086.3:c.20-297G>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365258
ensembl transcript: ENST00000376090
gene symbol: LST1
hgvsc: ENST00000376090.2:c.19+329G>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 415
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1889
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26692
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2237
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11139
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3471
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14181
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 656
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2803
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30130
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13496
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.090425860683602e-5
allele num: 32358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.058e0

DP
type: SiteQuality
SIO_000300: 7.61638e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

QD
type: SiteQuality
SIO_000300: 1.451e1

VQSLOD
type: SiteQuality
SIO_000300: 7.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000464526
gene symbol: LST1
hgvsc: ENST00000464526.1:n.572A>G
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.20-295A>G
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000419073
gene symbol: LST1
hgvsc: ENST00000419073.1:n.149A>G
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14580
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3432
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 26509
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1929
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11012
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 409
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2160
bin: 1.75e1
variant carriers: 3

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3387
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2702
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2769
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30149
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 9.179364787956673e-5
allele num: 32682
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2014
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.169e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e0

DP
type: SiteQuality
SIO_000300: 7.66964e5

FS
type: SiteQuality
SIO_000300: 8.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365278
ensembl transcript: ENST00000376110
gene symbol: LST1
hgvsc: ENST00000376110.3:c.20-290C>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: stop_gained
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000391929
ensembl transcript: ENST00000438075
gene symbol: LST1
hgvsc: ENST00000438075.2:c.33C>A
hgvsp: ENSP00000391929.2:p.Tyr11Ter
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365254
ensembl transcript: ENST00000376086
gene symbol: LST1
hgvsc: ENST00000376086.3:c.20-290C>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 127
bin: 3.75e1
variant carriers: 2

GenotypeDepth
all individuals: 10895
bin: 1.25e1
variant carriers: 3

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2205
bin: 1.75e1
variant carriers: 6

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3391
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15082
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2133
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25869
bin: 7.5e0
variant carriers: 2

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2537
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2699
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 219
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1039
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14488
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5860
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 2.332256907068532e-3
allele num: 5574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2050
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33032
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 7.79877e5

QD
type: SiteQuality
SIO_000300: 1.048e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.486e0

VQSLOD
type: SiteQuality
SIO_000300: 5.95e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000419073
gene symbol: LST1
hgvsc: ENST00000419073.1:n.155G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365258
ensembl transcript: ENST00000376090
gene symbol: LST1
hgvsc: ENST00000376090.2:c.19+337G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.20-289G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1959
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25297
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 448
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10516
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3351
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2282
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16163
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2553
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3406
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 514
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29510
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16320
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.665001665001665e-4
allele num: 6006
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 33658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.94374e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.7e-3

QD
type: SiteQuality
SIO_000300: 1.497e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.626e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000460834
gene symbol: LST1
hgvsc: ENST00000460834.1:n.65-157G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.20-285G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.20-285G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1990
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24783
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2433
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 16323
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 3408
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10627
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 454
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 226
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29351
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 8.805917576611482e-4
allele num: 5678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34334
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

DP
type: SiteQuality
SIO_000300: 8.0034e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

QD
type: SiteQuality
SIO_000300: 7.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

FS
type: SiteQuality
SIO_000300: 9.967000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365254
ensembl transcript: ENST00000376086
gene symbol: LST1
hgvsc: ENST00000376086.3:c.20-285G>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+341G>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000460834
gene symbol: LST1
hgvsc: ENST00000460834.1:n.65-157G>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1990
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10627
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 454
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16323
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2433
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 24783
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3408
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 472
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2474
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3439
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29351
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 936
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.912564804566902e-5
allele num: 34334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2138
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.967000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.242e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 8.0034e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

MQRankSum
type: SiteQuality
SIO_000300: 3.77e-1

QD
type: SiteQuality
SIO_000300: 7.6e0

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000460834
gene symbol: LST1
hgvsc: ENST00000460834.1:n.65-154T>G
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+344T>G
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.20-282T>G
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 492
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 132
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10844
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3469
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 24273
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2647
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1970
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16296
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16671
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29237
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.749475157452764e-4
allele num: 5716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

QD
type: SiteQuality
SIO_000300: 7.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.202e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-2

DP
type: SiteQuality
SIO_000300: 8.0633e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.20-281G>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365258
ensembl transcript: ENST00000376090
gene symbol: LST1
hgvsc: ENST00000376090.2:c.19+345G>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365260
ensembl transcript: ENST00000376092
gene symbol: LST1
hgvsc: ENST00000376092.3:c.19+345G>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24102
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3721
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15664
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 11311
bin: 1.25e1
variant carriers: 5

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 128
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 470
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2062
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 2630
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 953
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2542
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 955
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29323
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3795
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.027222704894295e-4
allele num: 34530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2182
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.747640685075148e-4
allele num: 5722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.582000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 3.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 7.9824e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

QD
type: SiteQuality
SIO_000300: 5.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365260
ensembl transcript: ENST00000376092
gene symbol: LST1
hgvsc: ENST00000376092.3:c.19+347G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000391929
ensembl transcript: ENST00000438075
gene symbol: LST1
hgvsc: ENST00000438075.2:c.44G>A
hgvsp: ENSP00000391929.2:p.Gly15Glu
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.20-279G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23967
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2075
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 456
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11426
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15538
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3799
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2693
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3867
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2550
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29421
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 900
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.828975820719482e-5
allele num: 10174
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5276
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.045e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.747e1

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 7.97928e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.286e0

VQSLOD
type: SiteQuality
SIO_000300: -2.415e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.20-278G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+348G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365268
ensembl transcript: ENST00000376100
gene symbol: LST1
hgvsc: ENST00000376100.3:c.19+348G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 2738
bin: 2.75e1
variant carriers: 12

GenotypeDepth
all individuals: 3809
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 126
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11420
bin: 1.25e1
variant carriers: 14

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 474
bin: 3.25e1
variant carriers: 4

GenotypeDepth
all individuals: 23857
bin: 7.5e0
variant carriers: 3

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 15571
bin: 2.25e1
variant carriers: 10

GenotypeDepth
all individuals: 2089
bin: 1.75e1
variant carriers: 28

GenotypeDepth
all individuals: 80
bin: 4.25e1
variant carriers: 2

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 917
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29371
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2119
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 844
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15775
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 216
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2534
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 9.75e1
variant carriers: 65

GenotypeQuality
all individuals: 470
bin: 4.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.766347595433053e-5
allele num: 34684
num of homozygotes: 0

East Asian
type: Population
allele count: 67
allele frequency: 1.163598471691559e-2
allele num: 5758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6058
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

QD
type: SiteQuality
SIO_000300: 1.026e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

DP
type: SiteQuality
SIO_000300: 7.9985e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000211921
ensembl transcript: ENST00000211921
gene symbol: LST1
hgvsc: ENST00000211921.7:c.19+354C>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+354C>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365254
ensembl transcript: ENST00000376086
gene symbol: LST1
hgvsc: ENST00000376086.3:c.20-272C>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365258
ensembl transcript: ENST00000376090
gene symbol: LST1
hgvsc: ENST00000376090.2:c.19+354C>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 2839
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14626
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 12048
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4079
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23384
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2436
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4255
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5942
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.899054908099959e-5
allele num: 34494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10414
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.884e1

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

FS
type: SiteQuality
SIO_000300: 3.68e0

VQSLOD
type: SiteQuality
SIO_000300: -1.686e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.692e0

DP
type: SiteQuality
SIO_000300: 7.93301e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

QD
type: SiteQuality
SIO_000300: 4.48e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.20-272C>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000399869
ensembl transcript: ENST00000433492
gene symbol: LST1
hgvsc: ENST00000433492.1:c.51C>T
hgvsp: ENST00000433492.1:c.51C>T(p.%3D)
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000418578
ensembl transcript: ENST00000490742
gene symbol: LST1
hgvsc: ENST00000490742.1:c.35C>T
hgvsp: ENST00000490742.1:c.35C>T(p.%3D)
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+354C>T
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 2839
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4079
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 23384
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12048
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14626
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2436
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2090
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14717
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4255
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 823
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.798109816199919e-5
allele num: 34494
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.682935038707506e-4
allele num: 5942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2064
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.602458229306702e-5
allele num: 10414
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.46e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.692e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.686e0

FS
type: SiteQuality
SIO_000300: 3.68e0

QD
type: SiteQuality
SIO_000300: 4.48e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 7.93301e5

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365267
ensembl transcript: ENST00000376099
gene symbol: LST1
hgvsc: ENST00000376099.1:c.19+355G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365278
ensembl transcript: ENST00000376110
gene symbol: LST1
hgvsc: ENST00000376110.3:c.20-271G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.20-271G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000417645
ensembl transcript: ENST00000464044
gene symbol: LST1
hgvsc: ENST00000464044.1:c.5G>A
hgvsp: ENSP00000417645.1:p.Gly3Arg
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 79
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2866
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11973
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2276
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 485
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14889
bin: 2.25e1
variant carriers: 4

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23312
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4104
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2530
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29746
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15783
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4281
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 779
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 586
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5718
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 1.000667111407605e-3
allele num: 5996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10516
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

FS
type: SiteQuality
SIO_000300: 5.542e0

DP
type: SiteQuality
SIO_000300: 7.95757e5

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

QD
type: SiteQuality
SIO_000300: 1.006e1

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000464526
gene symbol: LST1
hgvsc: ENST00000464526.1:n.600T>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000418578
ensembl transcript: ENST00000490742
gene symbol: LST1
hgvsc: ENST00000490742.1:c.40T>C
hgvsp: ENSP00000418578.1:p.Leu14Pro
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000379418
ensembl transcript: ENST00000396112
gene symbol: LST1
hgvsc: ENST00000396112.2:c.56T>C
hgvsp: ENSP00000379418.2:p.Leu19Pro
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365268
ensembl transcript: ENST00000376100
gene symbol: LST1
hgvsc: ENST00000376100.3:c.19+359T>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23202
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4448
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12594
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 444
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2555
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13809
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2810
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4696
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 242
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 876
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29963
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.888837531777213e-5
allele num: 34616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2110
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

QD
type: SiteQuality
SIO_000300: 9.49e0

FS
type: SiteQuality
SIO_000300: 4.467e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

VQSLOD
type: SiteQuality
SIO_000300: -9.623e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.376e0

DP
type: SiteQuality
SIO_000300: 7.81491e5

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

Annotation
canonical: false
consequence: synonymous_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000399869
ensembl transcript: ENST00000433492
gene symbol: LST1
hgvsc: ENST00000433492.1:c.84C>T
hgvsp: ENST00000433492.1:c.84C>T(p.%3D)
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.20-239C>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000460834
gene symbol: LST1
hgvsc: ENST00000460834.1:n.65-111C>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365260
ensembl transcript: ENST00000376092
gene symbol: LST1
hgvsc: ENST00000376092.3:c.19+387C>T
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14725
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2920
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 638
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5058
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4936
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23079
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8369
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8651
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1851
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3200
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5798
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.988285919196749e-5
allele num: 33464
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 7.43081e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.34e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.8e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

FS
type: SiteQuality
SIO_000300: 4.688e0

QD
type: SiteQuality
SIO_000300: 7.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365279
ensembl transcript: ENST00000376111
gene symbol: LST1
hgvsc: ENST00000376111.4:c.-82G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365258
ensembl transcript: ENST00000376090
gene symbol: LST1
hgvsc: ENST00000376090.2:c.19+388G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.20-238G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.20-238G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 2604
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 530
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22553
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 4531
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14168
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8178
bin: 2.25e1
variant carriers: 2

GenotypeDepth
all individuals: 5067
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 660
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6131
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1995
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5002
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1463
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7245
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 538
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 767
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24528
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.883522941309425e-4
allele num: 26546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.06e-2

DP
type: SiteQuality
SIO_000300: 7.38825e5

VQSLOD
type: SiteQuality
SIO_000300: -1.341e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

QD
type: SiteQuality
SIO_000300: 8.82e0

FS
type: SiteQuality
SIO_000300: 2.585e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365260
ensembl transcript: ENST00000376092
gene symbol: LST1
hgvsc: ENST00000376092.3:c.19+388G>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: non_coding_transcript_exon_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000464526
gene symbol: LST1
hgvsc: ENST00000464526.1:n.629G>C
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000391929
ensembl transcript: ENST00000438075
gene symbol: LST1
hgvsc: ENST00000438075.2:c.85G>C
hgvsp: ENSP00000391929.2:p.Ala29Pro
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: true
consequence: missense_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365261
ensembl transcript: ENST00000376093
gene symbol: LST1
hgvsc: ENST00000376093.2:c.85G>C
hgvsp: ENSP00000365261.2:p.Ala29Pro
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 530
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22553
bin: 7.5e0
variant carriers: 3

GenotypeDepth
all individuals: 11
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14168
bin: 1.25e1
variant carriers: 4

GenotypeDepth
all individuals: 4531
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5067
bin: 1.75e1
variant carriers: 1

GenotypeDepth
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8178
bin: 2.25e1
variant carriers: 3

GenotypeDepth
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2604
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 538
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24528
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1995
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6131
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5002
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 2987
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7245
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1463
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2064
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2216
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.935995302407516e-4
allele num: 3406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.636932117833195e-4
allele num: 26546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.216312056737589e-4
allele num: 4512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.585e1

QD
type: SiteQuality
SIO_000300: 8.82e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.341e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 7.38825e5

Annotation
canonical: false
consequence: non_coding_transcript_variant
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl transcript: ENST00000460834
gene symbol: LST1
hgvsc: ENST00000460834.1:n.65-110G>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000339201
ensembl transcript: ENST00000339530
gene symbol: LST1
hgvsc: ENST00000339530.4:c.85G>T
hgvsp: ENSP00000339201.4:p.Ala29Ser
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.20-238G>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000211921
ensembl transcript: ENST00000211921
gene symbol: LST1
hgvsc: ENST00000211921.7:c.19+388G>T
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 5067
bin: 1.75e1
variant carriers: 27

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 175
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2604
bin: 2.75e1
variant carriers: 3

GenotypeDepth
all individuals: 22553
bin: 7.5e0
variant carriers: 9

GenotypeDepth
all individuals: 4531
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8178
bin: 2.25e1
variant carriers: 8

GenotypeDepth
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 530
bin: 3.25e1
variant carriers: 3

GenotypeDepth
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14168
bin: 1.25e1
variant carriers: 24

GenotypeDepth
all individuals: 6
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24528
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6131
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 538
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 767
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5002
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 209
bin: 9.75e1
variant carriers: 52

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2064
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 806
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1463
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 7245
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 660
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1995
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.754194303550527e-5
allele num: 10252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.534091765237701e-5
allele num: 26546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

East Asian
type: Population
allele count: 59
allele frequency: 1.307624113475177e-2
allele num: 4512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 7.38825e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.06e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 2.585e1

VQSLOD
type: SiteQuality
SIO_000300: -1.341e0

QD
type: SiteQuality
SIO_000300: 8.82e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365254
ensembl transcript: ENST00000376086
gene symbol: LST1
hgvsc: ENST00000376086.3:c.20-216G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365278
ensembl transcript: ENST00000376110
gene symbol: LST1
hgvsc: ENST00000376110.3:c.20-216G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365260
ensembl transcript: ENST00000376092
gene symbol: LST1
hgvsc: ENST00000376092.3:c.19+410G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.20-216G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 608
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18394
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4937
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 2179
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7715
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2802
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23194
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8422
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35593
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6845
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.434782608695652e-4
allele num: 1840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4824
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

FS
type: SiteQuality
SIO_000300: 1.576e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

QD
type: SiteQuality
SIO_000300: 9.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.849e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.99e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.328e0

DP
type: SiteQuality
SIO_000300: 6.70649e5

MQ
type: SiteQuality
SIO_000300: 5.906e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365268
ensembl transcript: ENST00000376100
gene symbol: LST1
hgvsc: ENST00000376100.3:c.19+410G>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: 5_prime_UTR_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365279
ensembl transcript: ENST00000376111
gene symbol: LST1
hgvsc: ENST00000376111.4:c.-60G>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365278
ensembl transcript: ENST00000376110
gene symbol: LST1
hgvsc: ENST00000376110.3:c.20-216G>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.20-216G>T
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18394
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 7715
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2802
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4937
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 608
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23194
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2179
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 520
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6845
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8422
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35593
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.27653997378768e-5
allele num: 30520
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -1.328e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.849e0

QD
type: SiteQuality
SIO_000300: 9.51e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.99e-1

DP
type: SiteQuality
SIO_000300: 6.70649e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.62e-2

FS
type: SiteQuality
SIO_000300: 1.576e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

Annotation
canonical: false
consequence: splice_region_variant
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000417645
ensembl transcript: ENST00000464044
gene symbol: LST1
hgvsc: ENST00000464044.1:c.65+6C>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000405900
ensembl transcript: ENST00000418507
gene symbol: LST1
hgvsc: ENST00000418507.2:c.20-205C>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000211921
ensembl transcript: ENST00000211921
gene symbol: LST1
hgvsc: ENST00000211921.7:c.19+421C>T
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 17443
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 12475
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 143
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2446
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1530
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 490
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22360
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2761
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14204
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30714
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2576
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.913894324853229e-5
allele num: 25550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8932
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.84e-2

FS
type: SiteQuality
SIO_000300: 8.334e0

QD
type: SiteQuality
SIO_000300: 1.381e1

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.81739e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.953e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000379418
ensembl transcript: ENST00000396112
gene symbol: LST1
hgvsc: ENST00000396112.2:c.112+14T>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000211921
ensembl transcript: ENST00000211921
gene symbol: LST1
hgvsc: ENST00000211921.7:c.19+429T>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2449
bin: 1.75e1
variant carriers: 2

GenotypeDepth
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 17108
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1338
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 906
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21648
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 15046
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 412
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 23748
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19930
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 90
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.492240350179069e-4
allele num: 20104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 944
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.261034047919294e-4
allele num: 7930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.050000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

FS
type: SiteQuality
SIO_000300: 2.725e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 5.06402e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.87e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.5e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365254
ensembl transcript: ENST00000376086
gene symbol: LST1
hgvsc: ENST00000376086.3:c.20-188C>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365279
ensembl transcript: ENST00000376111
gene symbol: LST1
hgvsc: ENST00000376111.4:c.-55+23C>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 579
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 314
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22418
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 20916
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 792
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11000
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2083
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17300
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2470
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23500
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4313
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4586
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.456664238892935e-4
allele num: 13730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.41063e5

QD
type: SiteQuality
SIO_000300: 1.8e0

VQSLOD
type: SiteQuality
SIO_000300: -2.535e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.84e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+443T>G
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000379418
ensembl transcript: ENST00000396112
gene symbol: LST1
hgvsc: ENST00000396112.2:c.112+28T>G
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22217
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 683
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 473
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9220
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 22911
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 275
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1923
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24465
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5304
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 710
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1076
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11676
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.418e0

QD
type: SiteQuality
SIO_000300: 5.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.13e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 4.16224e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

GenotypeDepth
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 249
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22977
bin: 2.5e0
variant carriers: 1

GenotypeDepth
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1815
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 405
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 580
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8106
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23303
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25422
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2511
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3390
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5886
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1916
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14800
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 93
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.916810427448725e-4
allele num: 10434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1708
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.029e0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQ
type: SiteQuality
SIO_000300: 4.705e1

QD
type: SiteQuality
SIO_000300: 6.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.22e-2

FS
type: SiteQuality
SIO_000300: 6.752e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 3.99429e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.214e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000391929
ensembl transcript: ENST00000438075
gene symbol: LST1
hgvsc: ENST00000438075.2:c.113-50C>T
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 5865
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1965
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1442
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9330
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 12316
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 3493
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5860
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1105
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2748
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9601
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 4332
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 601
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6953
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1748
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12764
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2213
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2408
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8054
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4157
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3312
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.706535141800247e-5
allele num: 12976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.25754120789628e-5
allele num: 61396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.378e1

DP
type: SiteQuality
SIO_000300: 1.647556e6

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

FS
type: SiteQuality
SIO_000300: 2.256e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.297e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.17e-2

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365261
ensembl transcript: ENST00000376093
gene symbol: LST1
hgvsc: ENST00000376093.2:c.113-49G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 9600
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5860
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3495
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1968
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4326
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2751
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 9624
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12389
bin: 2.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5495
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1442
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1104
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8033
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3395
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3021
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3288
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13668
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1921
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.627286337303912e-5
allele num: 61452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

QD
type: SiteQuality
SIO_000300: 8.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.649997e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.777e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.19+600delG
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 1106
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13767
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13438
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1296
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2564
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10131
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5917
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3503
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1346
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 211
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2947
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1971
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 601
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20024
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7672
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8053
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1106
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1733
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3477
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4236
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.615822130299897e-5
allele num: 61888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e0

MQRankSum
type: SiteQuality
SIO_000300: -1.163e0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.735e0

FS
type: SiteQuality
SIO_000300: 5.698e0

QD
type: SiteQuality
SIO_000300: 1.653e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.699965e6

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365257
ensembl transcript: ENST00000376089
gene symbol: LST1
hgvsc: ENST00000376089.2:c.20-22T>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 601
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 912
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13972
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2491
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1106
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5920
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1252
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10174
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14227
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3505
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2439
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1972
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1736
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21248
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8052
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3493
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4252
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3164
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7716
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61982
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178689297501179e-4
allele num: 8484
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13532
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.811e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.01e-1

QD
type: SiteQuality
SIO_000300: 1.121e1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

DP
type: SiteQuality
SIO_000300: 1.70986e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.04e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365254
ensembl transcript: ENST00000376086
gene symbol: LST1
hgvsc: ENST00000376086.3:c.20-16T>G
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 2378
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 131
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1973
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1106
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14562
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 601
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2085
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10235
bin: 3.25e1
variant carriers: 1

GenotypeDepth
all individuals: 5926
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 716
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1188
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3504
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14219
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1737
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7748
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21374
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8051
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3508
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.222064699059157e-5
allele num: 62072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.799718409010911e-5
allele num: 11364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

DP
type: SiteQuality
SIO_000300: 1.717444e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.44e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.415e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000211921
ensembl transcript: ENST00000211921
gene symbol: LST1
hgvsc: ENST00000211921.7:c.20-561G>A
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000379408
ensembl transcript: ENST00000396101
gene symbol: LST1
hgvsc: ENST00000396101.3:c.112+224G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5950
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10365
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1107
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 683
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14169
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1161
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3507
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1921
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14800
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2151
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1971
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8045
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 123
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3091
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7820
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4246
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3507
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.606890345802802e-5
allele num: 62232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.647e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.49e-1

QD
type: SiteQuality
SIO_000300: 1.458e1

FS
type: SiteQuality
SIO_000300: 3.794e0

VQSLOD
type: SiteQuality
SIO_000300: -6.78e-2

MQ
type: SiteQuality
SIO_000300: 5.936e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 1.726315e6

MQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

Annotation
canonical: false
consequence: missense_variant
consequence: splice_region_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365278
ensembl transcript: ENST00000376110
gene symbol: LST1
hgvsc: ENST00000376110.3:c.42G>T
hgvsp: ENSP00000365278.3:p.Trp14Cys
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000379408
ensembl transcript: ENST00000396101
gene symbol: LST1
hgvsc: ENST00000396101.3:c.112+233G>T
variant of: http://identifiers.org/hgnc/14189

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365270
ensembl transcript: ENST00000376102
gene symbol: LST1
hgvsc: ENST00000376102.3:c.96+233G>T
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 10368
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5961
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1971
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 899
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 13441
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1206
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14793
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3505
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2154
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1107
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 600
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2375
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3494
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1727
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7738
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3402
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21232
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8044
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62208
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.103752759381898e-4
allele num: 9060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13746
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.36e-1

DP
type: SiteQuality
SIO_000300: 1.720409e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.824e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 9.134e0

MQRankSum
type: SiteQuality
SIO_000300: -4.79e-1

QD
type: SiteQuality
SIO_000300: 1.49e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000303649
ensembl transcript: ENST00000303757
gene symbol: LST1
hgvsc: ENST00000303757.8:c.112+251G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 600
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1356
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10354
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1972
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3432
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3510
bin: 4.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1110
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11639
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1728
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2257
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14466
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5966
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3897
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8043
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 691
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4191
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19214
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2256
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3446
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.105460977227504e-4
allele num: 9046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62018
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: -4.18e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 1.317e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.952e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.715e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

DP
type: SiteQuality
SIO_000300: 1.700183e6

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365261
ensembl transcript: ENST00000376093
gene symbol: LST1
hgvsc: ENST00000376093.2:c.135+19A>G
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 10358
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11619
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2257
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 601
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1972
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1367
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3441
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1719
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14480
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1109
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5962
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3512
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19284
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3318
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4192
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7556
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2255
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8042
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3439
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.612747153501274e-5
allele num: 62006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13314
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.768e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.700229e6

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.799e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.152e0

FS
type: SiteQuality
SIO_000300: 5.555e0

QD
type: SiteQuality
SIO_000300: 1.292e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365260
ensembl transcript: ENST00000376092
gene symbol: LST1
hgvsc: ENST00000376092.3:c.20-511A>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 1110
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14430
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5977
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 601
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1791
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1387
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 211
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 11517
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1974
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2252
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3498
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3512
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10348
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4177
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19216
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3933
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8042
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 270
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3429
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.225806451612903e-5
allele num: 62000
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.637e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQ
type: SiteQuality
SIO_000300: 5.835e1

QD
type: SiteQuality
SIO_000300: 1.019e1

DP
type: SiteQuality
SIO_000300: 1.699024e6

FS
type: SiteQuality
SIO_000300: 1.241e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

Annotation
canonical: true
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365261
ensembl transcript: ENST00000376093
gene symbol: LST1
hgvsc: ENST00000376093.2:c.135+21G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3521
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1873
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 600
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11382
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2249
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1404
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3542
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1974
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5989
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10356
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 14399
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1110
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8042
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3937
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13274
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.106684373616645e-4
allele num: 9036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61980
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.69806e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

FS
type: SiteQuality
SIO_000300: 2.598e0

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365264
ensembl transcript: ENST00000376096
gene symbol: LST1
hgvsc: ENST00000376096.1:c.20-576G>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 1110
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1404
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 600
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11382
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14399
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10356
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5989
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3542
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1974
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1873
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2249
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 362
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 121
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3521
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 210
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 72
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7539
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19091
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3937
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4179
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8042
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.533524182612626e-5
allele num: 13274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61980
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

DP
type: SiteQuality
SIO_000300: 1.69806e6

FS
type: SiteQuality
SIO_000300: 2.598e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000379408
ensembl transcript: ENST00000396101
gene symbol: LST1
hgvsc: ENST00000396101.3:c.112+255G>A
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 1115
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1983
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1979
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3518
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2265
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 364
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11276
bin: 2.25e1
variant carriers: 1

GenotypeDepth
all individuals: 1412
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5976
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 14317
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 211
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 74
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3581
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10365
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18918
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3938
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8106
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.613215461056979e-5
allele num: 61988
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.678e0

FS
type: SiteQuality
SIO_000300: 2.624e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

DP
type: SiteQuality
SIO_000300: 1.6968e6

QD
type: SiteQuality
SIO_000300: 1.141e1

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

Annotation
canonical: false
consequence: intron_variant
ensembl gene: ENSG00000204482
ensembl protein: ENSP00000365268
ensembl transcript: ENST00000376100
gene symbol: LST1
hgvsc: ENST00000376100.3:c.20-509G>C
variant of: http://identifiers.org/hgnc/14189

GenotypeDepth
all individuals: 5976
bin: 3.75e1
variant carriers: 12

GenotypeDepth
all individuals: 74
bin: 7.75e1
variant carriers: 2

GenotypeDepth
all individuals: 3581
bin: 1.25e1
variant carriers: 2

GenotypeDepth
all individuals: 211
bin: 6.75e1
variant carriers: 2

GenotypeDepth
all individuals: 14317
bin: 2.75e1
variant carriers: 7

GenotypeDepth
all individuals: 130
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2265
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 1983
bin: 1.75e1
variant carriers: 4

GenotypeDepth
all individuals: 602
bin: 5.75e1
variant carriers: 4

GenotypeDepth
all individuals: 1115
bin: 5.25e1
variant carriers: 6

GenotypeDepth
all individuals: 364
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 10365
bin: 3.25e1
variant carriers: 14

GenotypeDepth
all individuals: 11276
bin: 2.25e1
variant carriers: 5

GenotypeDepth
all individuals: 64
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1412
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 122
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 3518
bin: 4.25e1
variant carriers: 13

GenotypeDepth
all individuals: 31
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1979
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7524
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4174
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3938
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8106
bin: 9.75e1
variant carriers: 84

GenotypeQuality
all individuals: 18918
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1709
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9032
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 1.357466063348416e-3
allele num: 13260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 9.686509334272632e-4
allele num: 11356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 54
allele frequency: 8.711363489707685e-4
allele num: 61988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.6e-4
allele num: 6250
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.141e1

MQRankSum
type: SiteQuality
SIO_000300: 2.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 2.624e0

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.678e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 1.6968e6