10-105420738-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420738
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420738
    reference: chr 10
allele count: 1
allele frequency: 8.256002113536541e-6
allele num: 121124
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.109+3G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.494+3G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.467+3G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.604+3G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.205+3G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.190+3G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.604+3G>C
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4958
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5637
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 6.75e1
  variant carriers: 0
hgvs: c.604+3G>C
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-105420742-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420742
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420742
    reference: chr 10
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.603C>T
  hgvsp: ENST00000369774.4:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.204C>T
  hgvsp: ENST00000540321.1:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.108C>T
  hgvsp: ENST00000538130.1:c.108C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.493C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.603C>T
  hgvsp: ENST00000355946.2:c.603C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.189C>T
  hgvsp: ENST00000427662.2:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.466C>T
  hgvsp: ENST00000420222.1:c.466C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6464
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
hgvs: c.603C>T
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

10-105420747-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420747
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420747
    reference: chr 10
allele count: 2
allele frequency: 1.650818806127839e-5
allele num: 121152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.103G>C
  hgvsp: ENSP00000441514.1:p.Glu35Gln
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.598G>C
  hgvsp: ENSP00000358789.4:p.Glu200Gln
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.199G>C
  hgvsp: ENSP00000443663.1:p.Glu67Gln
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.461G>C
  hgvsp: ENSP00000395781.1:p.Glu155Gln
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.184G>C
  hgvsp: ENSP00000392664.2:p.Glu62Gln
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.598G>C
  hgvsp: ENSP00000348215.2:p.Glu200Gln
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.488G>C
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6465
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu200Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

10-105420747-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420747
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420747
    reference: chr 10
allele count: 2
allele frequency: 1.650818806127839e-5
allele num: 121152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.598G>A
  hgvsp: ENSP00000358789.4:p.Glu200Lys
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.199G>A
  hgvsp: ENSP00000443663.1:p.Glu67Lys
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.461G>A
  hgvsp: ENSP00000395781.1:p.Glu155Lys
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.103G>A
  hgvsp: ENSP00000441514.1:p.Glu35Lys
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.184G>A
  hgvsp: ENSP00000392664.2:p.Glu62Lys
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.488G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.598G>A
  hgvsp: ENSP00000348215.2:p.Glu200Lys
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6465
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2445
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu200Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

10-105420760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420760
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420760
    reference: chr 10
allele count: 3
allele frequency: 2.475737769855417e-5
allele num: 121176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.585C>T
  hgvsp: ENST00000369774.4:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.585C>T
  hgvsp: ENST00000355946.2:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.186C>T
  hgvsp: ENST00000540321.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.475C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.171C>T
  hgvsp: ENST00000427662.2:c.171C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.90C>T
  hgvsp: ENST00000538130.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.448C>T
  hgvsp: ENST00000420222.1:c.448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4284
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6467
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val195Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/10-105420780-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420780
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420780
    reference: chr 10
allele count: 2
allele frequency: 1.649919978881024e-5
allele num: 121218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.70G>T
  hgvsp: ENSP00000441514.1:p.Ala24Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.428G>T
  hgvsp: ENSP00000395781.1:p.Ala144Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.151G>T
  hgvsp: ENSP00000392664.2:p.Ala51Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.166G>T
  hgvsp: ENSP00000443663.1:p.Ala56Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.565G>T
  hgvsp: ENSP00000358789.4:p.Ala189Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.565G>T
  hgvsp: ENSP00000348215.2:p.Ala189Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.455G>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8801
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala189Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

10-105420780-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420780
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420780
    reference: chr 10
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.70G>A
  hgvsp: ENSP00000441514.1:p.Ala24Thr
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.455G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.565G>A
  hgvsp: ENSP00000348215.2:p.Ala189Thr
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.151G>A
  hgvsp: ENSP00000392664.2:p.Ala51Thr
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.565G>A
  hgvsp: ENSP00000358789.4:p.Ala189Thr
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.428G>A
  hgvsp: ENSP00000395781.1:p.Ala144Thr
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.166G>A
  hgvsp: ENSP00000443663.1:p.Ala56Thr
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala189Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

10-105420788-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420788
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420788
    reference: chr 10
allele count: 3
allele frequency: 2.474512521033356e-5
allele num: 121236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.447G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.557G>A
  hgvsp: ENSP00000348215.2:p.Ser186Asn
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.557G>A
  hgvsp: ENSP00000358789.4:p.Ser186Asn
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.158G>A
  hgvsp: ENSP00000443663.1:p.Ser53Asn
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.420G>A
  hgvsp: ENSP00000395781.1:p.Ser141Asn
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.62G>A
  hgvsp: ENSP00000441514.1:p.Ser21Asn
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.143G>A
  hgvsp: ENSP00000392664.2:p.Ser48Asn
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5733
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6469
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45630
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser186Asn
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/10-105420796-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420796
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420796
    reference: chr 10
allele count: 22
allele frequency: 1.814672451622482e-4
allele num: 121234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.150G>T
  hgvsp: ENST00000540321.1:c.150G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.135G>T
  hgvsp: ENST00000427662.2:c.135G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.54G>T
  hgvsp: ENST00000538130.1:c.54G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.412G>T
  hgvsp: ENST00000420222.1:c.412G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.439G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.549G>T
  hgvsp: ENST00000369774.4:c.549G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.549G>T
  hgvsp: ENST00000355946.2:c.549G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser183Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

10-105420816-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420816
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420816
    reference: chr 10
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.529T>C
  hgvsp: ENSP00000348215.2:p.Tyr177His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.529T>C
  hgvsp: ENSP00000358789.4:p.Tyr177His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.419T>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.34T>C
  hgvsp: ENSP00000441514.1:p.Tyr12His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.130T>C
  hgvsp: ENSP00000443663.1:p.Tyr44His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.115T>C
  hgvsp: ENSP00000392664.2:p.Tyr39His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.392T>C
  hgvsp: ENSP00000395781.1:p.Tyr132His
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45627
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2469
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr177His
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

10-105420818-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420818
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420818
    reference: chr 10
allele count: 8
allele frequency: 6.599353263380188e-5
allele num: 121224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.417A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.390A>G
  hgvsp: ENSP00000395781.1:p.Asn131Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.527A>G
  hgvsp: ENSP00000348215.2:p.Asn176Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.32A>G
  hgvsp: ENSP00000441514.1:p.Asn11Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.527A>G
  hgvsp: ENSP00000358789.4:p.Asn176Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.113A>G
  hgvsp: ENSP00000392664.2:p.Asn38Ser
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.128A>G
  hgvsp: ENSP00000443663.1:p.Asn43Ser
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45628
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn176Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

10-105420821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420821
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420821
    reference: chr 10
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.387C>T
  hgvsp: ENSP00000395781.1:p.Ser130Phe
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.125C>T
  hgvsp: ENSP00000443663.1:p.Ser42Phe
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.29C>T
  hgvsp: ENSP00000441514.1:p.Ser10Phe
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.524C>T
  hgvsp: ENSP00000348215.2:p.Ser175Phe
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.524C>T
  hgvsp: ENSP00000358789.4:p.Ser175Phe
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.110C>T
  hgvsp: ENSP00000392664.2:p.Ser37Phe
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.414C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4955
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2886
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45626
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8832
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser175Phe
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

10-105420831-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420831
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420831
    reference: chr 10
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.377G>C
  hgvsp: ENSP00000395781.1:p.Val127Leu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.514G>C
  hgvsp: ENSP00000348215.2:p.Val172Leu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.514G>C
  hgvsp: ENSP00000358789.4:p.Val172Leu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.115G>C
  hgvsp: ENSP00000443663.1:p.Val39Leu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.19G>C
  hgvsp: ENSP00000441514.1:p.Val7Leu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.404G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.100G>C
  hgvsp: ENSP00000392664.2:p.Val34Leu
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val172Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

10-105420831-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420831
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420831
    reference: chr 10
allele count: 3
allele frequency: 2.475288371095233e-5
allele num: 121198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.100G>A
  hgvsp: ENSP00000392664.2:p.Val34Met
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.404G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.514G>A
  hgvsp: ENSP00000358789.4:p.Val172Met
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.514G>A
  hgvsp: ENSP00000348215.2:p.Val172Met
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.115G>A
  hgvsp: ENSP00000443663.1:p.Val39Met
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.19G>A
  hgvsp: ENSP00000441514.1:p.Val7Met
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.377G>A
  hgvsp: ENSP00000395781.1:p.Val127Met
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val172Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

10-105420834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420834
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420834
    reference: chr 10
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.374T>C
  hgvsp: ENSP00000395781.1:p.Tyr126His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.511T>C
  hgvsp: ENSP00000358789.4:p.Tyr171His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.97T>C
  hgvsp: ENSP00000392664.2:p.Tyr33His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.112T>C
  hgvsp: ENSP00000443663.1:p.Tyr38His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.16T>C
  hgvsp: ENSP00000441514.1:p.Tyr6His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.511T>C
  hgvsp: ENSP00000348215.2:p.Tyr171His
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.401T>C
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45627
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2458
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr171His
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

10-105420837-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420837
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420837
    reference: chr 10
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.508C>G
  hgvsp: ENSP00000358789.4:p.Gln170Glu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.109C>G
  hgvsp: ENSP00000443663.1:p.Gln37Glu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.398C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.13C>G
  hgvsp: ENSP00000441514.1:p.Gln5Glu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.94C>G
  hgvsp: ENSP00000392664.2:p.Gln32Glu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.371C>G
  hgvsp: ENSP00000395781.1:p.Gln125Glu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.508C>G
  hgvsp: ENSP00000348215.2:p.Gln170Glu
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4904
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8789
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln170Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

10-105420838-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420838
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420838
    reference: chr 10
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.12A>G
  hgvsp: ENST00000538130.1:c.12A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.93A>G
  hgvsp: ENST00000427662.2:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.370A>G
  hgvsp: ENST00000420222.1:c.370A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.108A>G
  hgvsp: ENST00000540321.1:c.108A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.507A>G
  hgvsp: ENST00000355946.2:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.507A>G
  hgvsp: ENST00000369774.4:c.507A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.397A>G
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8786
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu169Glu
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

10-105420853-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420853
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420853
    reference: chr 10
allele count: 1
allele frequency: 8.265009256810368e-6
allele num: 120992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.355G>C
  hgvsp: ENSP00000395781.1:p.Glu119Asp
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.382G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.492G>C
  hgvsp: ENSP00000358789.4:p.Glu164Asp
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-4G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.492G>C
  hgvsp: ENSP00000348215.2:p.Glu164Asp
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.93G>C
  hgvsp: ENSP00000443663.1:p.Glu31Asp
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.78G>C
  hgvsp: ENSP00000392664.2:p.Glu26Asp
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6477
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu164Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

10-105420855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420855
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420855
    reference: chr 10
allele count: 2
allele frequency: 1.653603201375798e-5
allele num: 120948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.353G>A
  hgvsp: ENSP00000395781.1:p.Glu119Lys
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.76G>A
  hgvsp: ENSP00000392664.2:p.Glu26Lys
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.380G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-6G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.490G>A
  hgvsp: ENSP00000348215.2:p.Glu164Lys
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.490G>A
  hgvsp: ENSP00000358789.4:p.Glu164Lys
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.91G>A
  hgvsp: ENSP00000443663.1:p.Glu31Lys
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4279
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4903
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6479
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8420
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu164Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

10-105420856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420856
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420856
    reference: chr 10
allele count: 2
allele frequency: 1.653521173338625e-5
allele num: 120954
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.489C>T
  hgvsp: ENST00000355946.2:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.489C>T
  hgvsp: ENST00000369774.4:c.489C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.352C>T
  hgvsp: ENST00000420222.1:c.352C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.90C>T
  hgvsp: ENST00000540321.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.75C>T
  hgvsp: ENST00000427662.2:c.75C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.379C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-7C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45624
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala163Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

10-105420856-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420856
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420856
    reference: chr 10
allele count: 2
allele frequency: 1.653521173338625e-5
allele num: 120954
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-7C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.75C>G
  hgvsp: ENST00000427662.2:c.75C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.489C>G
  hgvsp: ENST00000369774.4:c.489C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.489C>G
  hgvsp: ENST00000355946.2:c.489C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.352C>G
  hgvsp: ENST00000420222.1:c.352C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.90C>G
  hgvsp: ENST00000540321.1:c.90C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.379C>G
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4280
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2848
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 752
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8461
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala163Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

10-105420859-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420859
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420859
    reference: chr 10
allele count: 1
allele frequency: 8.273077750384698e-6
allele num: 120874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.87C>T
  hgvsp: ENST00000540321.1:c.87C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.72C>T
  hgvsp: ENST00000427662.2:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-10C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.376C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.349C>T
  hgvsp: ENST00000420222.1:c.349C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.486C>T
  hgvsp: ENST00000355946.2:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.486C>T
  hgvsp: ENST00000369774.4:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6480
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4717
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8368
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr162Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-105420862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420862
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420862
    reference: chr 10
allele count: 1
allele frequency: 8.274583788435442e-6
allele num: 120852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.483C>T
  hgvsp: ENST00000369774.4:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.373C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.346C>T
  hgvsp: ENST00000420222.1:c.346C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.69C>T
  hgvsp: ENST00000427662.2:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.84C>T
  hgvsp: ENST00000540321.1:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.483C>T
  hgvsp: ENST00000355946.2:c.483C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-13C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45622
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala161Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

10-105420864-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420864
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420864
    reference: chr 10
allele count: 1
allele frequency: 8.278282753025713e-6
allele num: 120798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.344G>A
  hgvsp: ENSP00000395781.1:p.Ala116Thr
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.67G>A
  hgvsp: ENSP00000392664.2:p.Ala23Thr
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.371G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-15G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.481G>A
  hgvsp: ENSP00000348215.2:p.Ala161Thr
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.481G>A
  hgvsp: ENSP00000358789.4:p.Ala161Thr
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.82G>A
  hgvsp: ENSP00000443663.1:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4281
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala161Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-105420865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420865
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420865
    reference: chr 10
allele count: 1
allele frequency: 8.281985026171072e-6
allele num: 120744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.343C>T
  hgvsp: ENST00000420222.1:c.343C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.66C>T
  hgvsp: ENST00000427662.2:c.66C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.480C>T
  hgvsp: ENST00000369774.4:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.480C>T
  hgvsp: ENST00000355946.2:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.370C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.81C>T
  hgvsp: ENST00000540321.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45619
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp160Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

10-105420872-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420872
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420872
    reference: chr 10
allele count: 1
allele frequency: 8.296964970213896e-6
allele num: 120526
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473G>C
  hgvsp: ENSP00000358789.4:p.Gly158Ala
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59G>C
  hgvsp: ENSP00000392664.2:p.Gly20Ala
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336G>C
  hgvsp: ENSP00000395781.1:p.Gly113Ala
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473G>C
  hgvsp: ENSP00000348215.2:p.Gly158Ala
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74G>C
  hgvsp: ENSP00000443663.1:p.Gly25Ala
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2079
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly158Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/10-105420877-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420877
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420877
    reference: chr 10
allele count: 1
allele frequency: 8.30827005200977e-6
allele num: 120362
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-5G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-5G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-5G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-5G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-5G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-5G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-5G>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
hgvs: c.473-5G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-105420878-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420878
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420878
    reference: chr 10
allele count: 1
allele frequency: 8.308822307526131e-6
allele num: 120354
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-6C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-6C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-6C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-6C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-6C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-6C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-6C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4901
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7620
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1188
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 9.25e1
  variant carriers: 0
hgvs: c.473-6C>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

10-105420881-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420881
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420881
    reference: chr 10
allele count: 1
allele frequency: 8.316146630297385e-6
allele num: 120248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-9C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-9C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-9C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-9C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-9C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-9C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-9C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7418
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/10-105420891-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420891
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420891
    reference: chr 10
allele count: 1
allele frequency: 8.367080558251614e-6
allele num: 119516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-19T>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-19T>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-19T>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-19T>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-19T>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-19T>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-19T>G
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45610
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP

10-105420892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420892
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420892
    reference: chr 10
allele count: 1
allele frequency: 8.378577652657685e-6
allele num: 119352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-20G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-20G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-20G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-20G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-20G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-20G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-20G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4283
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
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genotype depth: GenotypeDepth
  all individuals: 2326
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
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genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 355
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45610
  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 87
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genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 99
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genotype quality: GenotypeQuality
  all individuals: 1754
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genotype quality: GenotypeQuality
  all individuals: 786
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

10-105420894-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420894
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420894
    reference: chr 10
allele count: 3
allele frequency: 2.518384204694268e-5
allele num: 119124
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-22G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-22G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-22G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-22G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-22G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-22G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-22G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
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  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
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genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
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genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
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genotype quality: GenotypeQuality
  all individuals: 385
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

10-105420898-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420898
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420898
    reference: chr 10
allele count: 1
allele frequency: 8.425877555147369e-6
allele num: 118682
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-26C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-26C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-26C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-26C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-26C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-26C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-26C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4952
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3162
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3662
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45608
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

10-105420903-AGCGGCCAGCCATGGCCCC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420903
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420885
    reference: chr 10
allele count: 1
allele frequency: 8.466253513495208e-6
allele num: 118116
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4025
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45606
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: AGCGGCCAGCCATGGCCCC
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ

10-105420905-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420905
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420905
    reference: chr 10
allele count: 2
allele frequency: 1.697187759881876e-5
allele num: 117842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-33G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-33G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-33G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-33G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-33G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-33G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-33G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2833
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3659
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2008
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3967
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

10-105420916-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420916
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420916
    reference: chr 10
allele count: 12
allele frequency: 1.033912324234905e-4
allele num: 116064
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-44C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-44C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-44C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-44C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-44C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-44C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-44C>G
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2849
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3402
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6485
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1097
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

10-105420917-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420917
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420917
    reference: chr 10
allele count: 4
allele frequency: 3.446077502283026e-5
allele num: 116074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-45C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-45C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-45C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-45C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-45C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-45C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-45C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4950
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45603
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

10-105420921-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420921
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420921
    reference: chr 10
allele count: 58
allele frequency: 5.023558758314856e-4
allele num: 115456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-49G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-49G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-49G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-49G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-49G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-49G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-49G>C
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45602
  bin: 9.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

10-105420921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420921
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420921
    reference: chr 10
allele count: 4
allele frequency: 3.464523281596452e-5
allele num: 115456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-49G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-49G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-49G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-49G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-49G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-49G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-49G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3637
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4943
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/10-105420923-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420923
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420923
    reference: chr 10
allele count: 1
allele frequency: 8.74263433057649e-6
allele num: 114382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-51G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-51G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-51G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-51G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-51G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-51G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-51G>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

10-105420923-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105420923
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105420923
    reference: chr 10
allele count: 1
allele frequency: 8.74263433057649e-6
allele num: 114382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.473-51G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-51G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.363-51G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.336-51G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-51G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000441514
  ensembl transcript: ENST00000538130
  gene symbol: SH3PXD2A
  hgvsc: ENST00000538130.1:c.-23-51G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.473-51G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

10-105428316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428316
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428316
    reference: chr 10
allele count: 1
allele frequency: 4.84824978182876e-5
allele num: 20626
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7444G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.472+50G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.362+50G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.472+50G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.335+50G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7444G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8577
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

10-105428317-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428317
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428317
    reference: chr 10
allele count: 3
allele frequency: 1.452221899506245e-4
allele num: 20658
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.362+49C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.472+49C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7445C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7445C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.335+49C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.472+49C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5395
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8039
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25719
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-105428325-AAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428325
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428323
    reference: chr 10
allele count: 92
allele frequency: 4.441440571594091e-3
allele num: 20714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.335+39_335+40delGT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.362+39_362+40delGT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7455_74-7454delGT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.472+39_472+40delGT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.472+39_472+40delGT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7455_59-7454delGT
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35896
  bin: 2.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 7.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28739
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 9.75e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5714
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.25e1
  variant carriers: 4
num of homozygotes: 7
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: AAC
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-105428337-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428337
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428337
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 20808
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.472+29G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.335+29G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.362+29G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7465G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7465G>C
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.472+29G>C
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6635
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35896
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3835
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30734
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6047
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

10-105428341-CACAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428341
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428337
    reference: chr 10
allele count: 2
allele frequency: 9.580379383023568e-5
allele num: 20876
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.472+21_472+24delATGT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.472+21_472+24delATGT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.362+21_362+24delATGT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7473_74-7470delATGT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.335+21_335+24delATGT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7473_59-7470delATGT
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35725
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7192
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31014
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6113
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3543
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: CACAT
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

10-105428343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428343
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428343
    reference: chr 10
allele count: 3
allele frequency: 1.436506416395327e-4
allele num: 20884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7471G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7471G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.472+23G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.335+23G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.362+23G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.472+23G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7519
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5352
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3071
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31458
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

10-105428353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428353
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428353
    reference: chr 10
allele count: 6
allele frequency: 2.855782960495002e-4
allele num: 21010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.335+13G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.362+13G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.472+13G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7481G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7481G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.472+13G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9310
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1823
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6334
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31565
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7021
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

10-105428354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428354
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428354
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 21020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7482C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.472+12C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.362+12C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7482C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.472+12C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.335+12C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34590
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6373
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2380
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

10-105428356-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428356
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428356
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 21100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.472+10A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7484A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.362+10A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.472+10A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.335+10A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7484A>G
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10206
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6424
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1704
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8162
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

10-105428372-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428372
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428372
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 21570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.466G>A
  hgvsp: ENSP00000358789.4:p.Val156Met
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.329G>A
  hgvsp: ENSP00000395781.1:p.Val111Met
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.466G>A
  hgvsp: ENSP00000348215.2:p.Val156Met
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7500G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.356G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7500G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14198
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29852
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val156Met
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

10-105428374-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428374
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428374
    reference: chr 10
allele count: 2
allele frequency: 9.228497600590623e-5
allele num: 21672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7502A>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.354A>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.464A>T
  hgvsp: ENSP00000358789.4:p.Asp155Val
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.327A>T
  hgvsp: ENSP00000395781.1:p.Asp110Val
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.464A>T
  hgvsp: ENSP00000348215.2:p.Asp155Val
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7502A>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30915
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12431
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29539
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp155Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

10-105428379-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428379
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428379
    reference: chr 10
allele count: 3
allele frequency: 1.374255611543747e-4
allele num: 21830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7507G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.459G>A
  hgvsp: ENST00000355946.2:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.322G>A
  hgvsp: ENST00000420222.1:c.322G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.459G>A
  hgvsp: ENST00000369774.4:c.459G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7507G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.349G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30140
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6436
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Lys153Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

10-105428380-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428380
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428380
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 21888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.348A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7508A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.458A>G
  hgvsp: ENSP00000358789.4:p.Lys153Arg
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7508A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.321A>G
  hgvsp: ENSP00000395781.1:p.Lys108Arg
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.458A>G
  hgvsp: ENSP00000348215.2:p.Lys153Arg
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29994
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15881
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28752
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys153Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD

10-105428385-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428385
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428385
    reference: chr 10
allele count: 13
allele frequency: 5.895691609977325e-4
allele num: 22050
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.453G>A
  hgvsp: ENST00000355946.2:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.343G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.453G>A
  hgvsp: ENST00000369774.4:c.453G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.316G>A
  hgvsp: ENST00000420222.1:c.316G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7513G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7513G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16565
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29237
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28113
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13065
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6351
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1709
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser151Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

10-105428386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428386
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428386
    reference: chr 10
allele count: 1
allele frequency: 4.50815976918222e-5
allele num: 22182
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7514C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7514C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.452C>T
  hgvsp: ENSP00000358789.4:p.Ser151Leu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.342C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.315C>T
  hgvsp: ENSP00000395781.1:p.Ser106Leu
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.452C>T
  hgvsp: ENSP00000348215.2:p.Ser151Leu
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28130
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13803
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser151Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

10-105428406-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428406
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428406
    reference: chr 10
allele count: 1
allele frequency: 4.29590170976888e-5
allele num: 23278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7534G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.295G>A
  hgvsp: ENSP00000395781.1:p.Trp99Ter
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.432G>A
  hgvsp: ENSP00000358789.4:p.Trp144Ter
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.322G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.432G>A
  hgvsp: ENSP00000348215.2:p.Trp144Ter
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7534G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19621
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17332
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27475
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Trp144Ter
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

10-105428415-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428415
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428415
    reference: chr 10
allele count: 13
allele frequency: 5.526271042339739e-4
allele num: 23524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-5G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7543G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7543G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-5G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.318-5G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-5G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19368
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25593
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29567
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5994
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
hgvs: c.428-5G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

10-105428419-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428419
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428419
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 23672
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-9A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7547A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-9A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7547A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.318-9A>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-9A>G
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25328
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5997
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/10-105428423-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428423
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428423
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 23656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.318-13G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-13G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7551G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-13G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7551G>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-13G>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18775
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24436
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

10-105428423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428423
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428423
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 23656
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-13G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-13G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7551G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.318-13G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-13G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7551G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18775
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32701
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5657
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11680
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

10-105428424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428424
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428424
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 23714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-14C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.318-14C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7552C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-14C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7552C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-14C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 24341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18742
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11593
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5641
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32926
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

10-105428424-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428424
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428424
    reference: chr 10
allele count: 2
allele frequency: 8.433836552247617e-5
allele num: 23714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-14C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.318-14C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-14C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7552C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7552C>G
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-14C>G
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18742
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-105428433-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428433
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428433
    reference: chr 10
allele count: 1
allele frequency: 4.411116012351125e-5
allele num: 22670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-23G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7561G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-23G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7561G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-23G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.318-23G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17974
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21023
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34143
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

10-105428452-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428452
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428452
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 5672
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-42G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-42G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-42G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.318-42G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7580G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7580G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9760
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

10-105428453-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105428453
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105428451
    reference: chr 10
allele count: 19950
allele frequency: 8.981631550513236e-1
allele num: 22212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.59-7583_59-7582delCT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.74-7583_74-7582delCT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.318-45_318-44delCT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-45_428-44delCT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-45_428-44delCT
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-45_291-44delCT
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 1.25e1
  variant carriers: 1560
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 2.25e1
  variant carriers: 957
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 2.75e1
  variant carriers: 1077
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 4.25e1
  variant carriers: 1051
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.75e1
  variant carriers: 763
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 3.25e1
  variant carriers: 1196
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 1.75e1
  variant carriers: 986
genotype depth: GenotypeDepth
  all individuals: 16971
  bin: 2.5e0
  variant carriers: 13886
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 15323
  bin: 7.5e0
  variant carriers: 13413
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.75e1
  variant carriers: 467
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 5.25e1
  variant carriers: 544
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 3.75e1
  variant carriers: 1199
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.25e1
  variant carriers: 297
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 8.75e1
  variant carriers: 300
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 3.25e1
  variant carriers: 755
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.25e1
  variant carriers: 329
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 4.75e1
  variant carriers: 301
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 5.75e1
  variant carriers: 439
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 7.75e1
  variant carriers: 262
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.25e1
  variant carriers: 287
genotype quality: GenotypeQuality
  all individuals: 7815
  bin: 1.75e1
  variant carriers: 7768
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 6.25e1
  variant carriers: 699
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 6.75e1
  variant carriers: 268
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 2.25e1
  variant carriers: 3094
num of homozygotes: 8992
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: CAG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

10-105437816-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105437816
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105437816
    reference: chr 10
allele count: 1
allele frequency: 9.286775631500742e-5
allele num: 10768
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.199-4502T>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-9406T>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-9406T>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.73+23T>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.58+14970T>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-9406T>A
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3963
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

10-105437819-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105437819
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105437819
    reference: chr 10
allele count: 1
allele frequency: 9.285051067780872e-5
allele num: 10770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.199-4505C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-9409C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-9409C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.73+20C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.58+14967C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-9409C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

10-105437870-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105437870
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105437870
    reference: chr 10
allele count: 1
allele frequency: 9.285051067780872e-5
allele num: 10770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.199-4556G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.42G>A
  hgvsp: ENST00000540321.1:c.42G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-9460G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-9460G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-9460G>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.58+14916G>A
  variant of: http://identifiers.org/hgnc/23664
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2905
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala14Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

10-105437871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105437871
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105437871
    reference: chr 10
allele count: 1
allele frequency: 9.285051067780872e-5
allele num: 10770
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-9461C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.58+14915C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-9461C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.199-4557C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-9461C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.41C>T
  hgvsp: ENSP00000443663.1:p.Ala14Val
  variant of: http://identifiers.org/hgnc/23664
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala14Val
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff

10-105437890-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105437890
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105437890
    reference: chr 10
allele count: 4
allele frequency: 3.714710252600297e-4
allele num: 10768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-9480C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.22C>T
  hgvsp: ENSP00000443663.1:p.Arg8Trp
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-9480C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-9480C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.199-4576C>T
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.58+14896C>T
  variant of: http://identifiers.org/hgnc/23664
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3130
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg8Trp
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

10-105437899-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105437899
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 105437899
    reference: chr 10
allele count: 6
allele frequency: 5.569996286669142e-4
allele num: 10772
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000358789
  ensembl transcript: ENST00000369774
  gene symbol: SH3PXD2A
  hgvsc: ENST00000369774.4:c.428-9489T>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000348215
  ensembl transcript: ENST00000355946
  gene symbol: SH3PXD2A
  hgvsc: ENST00000355946.2:c.428-9489T>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000392664
  ensembl transcript: ENST00000427662
  gene symbol: SH3PXD2A
  hgvsc: ENST00000427662.2:c.58+14887T>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000443663
  ensembl transcript: ENST00000540321
  gene symbol: SH3PXD2A
  hgvsc: ENST00000540321.1:c.13T>A
  hgvsp: ENSP00000443663.1:p.Phe5Ile
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl protein: ENSP00000395781
  ensembl transcript: ENST00000420222
  gene symbol: SH3PXD2A
  hgvsc: ENST00000420222.1:c.291-9489T>A
  variant of: http://identifiers.org/hgnc/23664
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107957
  ensembl transcript: ENST00000315994
  gene symbol: SH3PXD2A
  hgvsc: ENST00000315994.6:n.199-4585T>A
  variant of: http://identifiers.org/hgnc/23664
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3964
  bin: 9.75e1
  variant carriers: 6
hgvs: p.Phe5Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8617
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45630
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

ClippingRankSum
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DP
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MQRankSum
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VQSLOD
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MQ
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QD
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BaseQRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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FS
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ReadPosRankSum
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QD
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DP
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InbreedingCoeff
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MQ
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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South Asian
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Other
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MQ
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MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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FS
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BaseQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66520
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East Asian
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Latino
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African
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South Asian
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QD
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ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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FS
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SIO_000300: 6.06e-1

ReadPosRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
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allele num: 16512
num of homozygotes: 0

European (Finnish)
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Other
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Latino
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African
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East Asian
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.005710850616171e-5
allele num: 66540
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VQSLOD
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DP
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ReadPosRankSum
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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African
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele num: 66574
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DP
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QD
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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allele frequency: 0.0e0
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European (Finnish)
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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South Asian
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ClippingRankSum
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QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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African
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Other
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European (Non-Finnish)
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East Asian
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DP
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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QD
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FS
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BaseQRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

DP
type: SiteQuality
SIO_000300: 3.797674e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.355e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.48e-1

MQ
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SIO_000300: 5.859e1

VQSLOD
type: SiteQuality
SIO_000300: -5.902e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e0

FS
type: SiteQuality
SIO_000300: 9.628e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 5
allele frequency: 3.028100775193798e-4
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.56e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.42e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.825e0

VQSLOD
type: SiteQuality
SIO_000300: -5.275e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 8.359999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

DP
type: SiteQuality
SIO_000300: 3.797573e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.47e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.617e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.157e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 3.797861e6

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 746
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.797861e6

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.617e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.157e1

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8807
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 917
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.797128e6

MQRankSum
type: SiteQuality
SIO_000300: -1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.57e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.286e1

MQ
type: SiteQuality
SIO_000300: 5.987e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.163e1

MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 3.797287e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.53e-1

FS
type: SiteQuality
SIO_000300: 5.923e0

MQRankSum
type: SiteQuality
SIO_000300: -7.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 676
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

FS
type: SiteQuality
SIO_000300: 2.367e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.796818e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505842669557885e-5
allele num: 66408
num of homozygotes: 0

East Asian
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QD
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.133e0

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

GenotypeQuality
all individuals: 908
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01295570955107e-5
allele num: 66380
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.012774162448783e-5
allele num: 66384
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Latino
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VQSLOD
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FS
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InbreedingCoeff
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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ReadPosRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.506387081224391e-5
allele num: 66384
num of homozygotes: 0

BaseQRankSum
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FS
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DP
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QD
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.507340749449821e-5
allele num: 66342
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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Latino
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Other
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DP
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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European (Non-Finnish)
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South Asian
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Latino
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num of homozygotes: 0

African
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MQ
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MQRankSum
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QD
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FS
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DP
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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Other
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.508068164681044e-5
allele num: 66310
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South Asian
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
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MQRankSum
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BaseQRankSum
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DP
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 1.158211721102618e-4
allele num: 8634
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Non-Finnish)
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South Asian
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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FS
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QD
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MQ
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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Other
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European (Non-Finnish)
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African
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Latino
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South Asian
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InbreedingCoeff
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ClippingRankSum
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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South Asian
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African
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East Asian
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Latino
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European (Finnish)
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DP
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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QD
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MQ
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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Latino
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InbreedingCoeff
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DP
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FS
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514142087093453e-5
allele num: 66044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.97e-1

FS
type: SiteQuality
SIO_000300: 5.945e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.441e0

QD
type: SiteQuality
SIO_000300: 1.356e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.462e-1

DP
type: SiteQuality
SIO_000300: 3.766392e6

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.735202492211838e-5
allele num: 10272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65692
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.744999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.046e0

MQRankSum
type: SiteQuality
SIO_000300: -8.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.14e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.549e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 3.736625e6

GenotypeQuality
all individuals: 5379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2348
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
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variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15892
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.136363636363636e-3
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.743e1

MQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 2.795e0

DP
type: SiteQuality
SIO_000300: 3.732404e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.044999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
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variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45607
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.509592887225082e-4
allele num: 8548
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

MQRankSum
type: SiteQuality
SIO_000300: -4.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 3.876e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.195e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 3.726669e6

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2563
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4498
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.83671060397403e-5
allele num: 10166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15774
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 8.083e0

QD
type: SiteQuality
SIO_000300: 1.771e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

DP
type: SiteQuality
SIO_000300: 3.713145e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

GenotypeQuality
all individuals: 516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539456264047538e-5
allele num: 64958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e-1

QD
type: SiteQuality
SIO_000300: 3.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.669e0

DP
type: SiteQuality
SIO_000300: 3.701162e6

MQ
type: SiteQuality
SIO_000300: 5.254e1

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45606
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 598
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.36854571293226e-4
allele num: 8444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 1.1066e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

QD
type: SiteQuality
SIO_000300: 9.869999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.209e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 3.697138e6

GenotypeQuality
all individuals: 1436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45606
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 418
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.16822429906542e-3
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.599788806758184e-4
allele num: 15152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63900
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.764241893076249e-5
allele num: 11410
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

FS
type: SiteQuality
SIO_000300: 2.869e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.64e-1

DP
type: SiteQuality
SIO_000300: 3.662941e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

QD
type: SiteQuality
SIO_000300: 1.105e1

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
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variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.258605582676179e-5
allele num: 63912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9814
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.705e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.202e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 3.662964e6

FS
type: SiteQuality
SIO_000300: 1.618e0

QD
type: SiteQuality
SIO_000300: 1.154e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.05e-1

GenotypeQuality
all individuals: 296
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
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GenotypeQuality
all individuals: 625
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variant carriers: 1

GenotypeQuality
all individuals: 939
bin: 6.75e1
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GenotypeQuality
all individuals: 2194
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
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variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9770
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.344266702513779e-4
allele num: 14878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63636
num of homozygotes: 0

East Asian
type: Population
allele count: 56
allele frequency: 6.71462829736211e-3
allele num: 8340
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e0

DP
type: SiteQuality
SIO_000300: 3.660209e6

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

QD
type: SiteQuality
SIO_000300: 1.516e1

GenotypeQuality
all individuals: 475
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45602
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023541453428864e-4
allele num: 9770
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.632040708896297e-4
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

QD
type: SiteQuality
SIO_000300: 1.516e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.83e0

VQSLOD
type: SiteQuality
SIO_000300: 5.94e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.660209e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 414
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45605
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583180292571718e-5
allele num: 63164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14466
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1336e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

DP
type: SiteQuality
SIO_000300: 3.655462e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.228e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

GenotypeQuality
all individuals: 376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45605
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583180292571718e-5
allele num: 63164
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

DP
type: SiteQuality
SIO_000300: 3.655462e6

FS
type: SiteQuality
SIO_000300: 1.1336e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.228e-1

GenotypeQuality
all individuals: 220
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 409
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.146000458400183e-4
allele num: 8726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7822
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.679999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.865e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.24e1

DP
type: SiteQuality
SIO_000300: 5.32832e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.580000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.8e-1

FS
type: SiteQuality
SIO_000300: 2.455e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.613e0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 412
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4993
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 7.283321194464676e-4
allele num: 2746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.145213009619789e-4
allele num: 8732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.693e0

VQSLOD
type: SiteQuality
SIO_000300: -2.033e0

DP
type: SiteQuality
SIO_000300: 5.33759e5

MQRankSum
type: SiteQuality
SIO_000300: -6.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.015e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.46e-1

GenotypeQuality
all individuals: 1625
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 450
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.143902997025852e-4
allele num: 8742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

African
type: Population
allele count: 89
allele frequency: 3.199137311286844e-2
allele num: 2782
num of homozygotes: 6

South Asian
type: Population
allele count: 2
allele frequency: 2.542588354945334e-4
allele num: 7866
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.832e1

DP
type: SiteQuality
SIO_000300: 5.44751e5

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.98e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

GenotypeQuality
all individuals: 2493
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2798
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.000000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.16e0

QD
type: SiteQuality
SIO_000300: 1.582e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

DP
type: SiteQuality
SIO_000300: 5.552e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.265518803806072e-4
allele num: 8828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.395e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 6.243e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.88e-2

QD
type: SiteQuality
SIO_000300: 1.26e1

VQSLOD
type: SiteQuality
SIO_000300: -1.467e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 5.60314e5

GenotypeQuality
all individuals: 6202
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.561253561253561e-4
allele num: 2808
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.890173410404624e-3
allele num: 692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.83e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 1.332e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.23e-1

DP
type: SiteQuality
SIO_000300: 5.63143e5

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 387
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 7.585335018963338e-4
allele num: 7910
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.601e0

VQSLOD
type: SiteQuality
SIO_000300: -1.019e0

QD
type: SiteQuality
SIO_000300: 1.486e1

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 1.406e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.619999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e0

DP
type: SiteQuality
SIO_000300: 5.76373e5

GenotypeQuality
all individuals: 31613
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 9.25e1
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GenotypeQuality
all individuals: 1412
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7910
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.78812e5

QD
type: SiteQuality
SIO_000300: 1.643e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.55e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.869e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 1299
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31707
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1668
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.33e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.45e-2

QD
type: SiteQuality
SIO_000300: 7.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 5.521e1

DP
type: SiteQuality
SIO_000300: 5.82763e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 223
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11834
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7934
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.93e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.846e0

QD
type: SiteQuality
SIO_000300: 5.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 6.08733e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1695
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2900
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.519526329050139e-4
allele num: 7938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.2e1

VQSLOD
type: SiteQuality
SIO_000300: -2.518e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.14e0

DP
type: SiteQuality
SIO_000300: 6.12446e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.85e-2

GenotypeQuality
all individuals: 12648
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28781
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.409090909090909e-3
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-2

DP
type: SiteQuality
SIO_000300: 6.17455e5

VQSLOD
type: SiteQuality
SIO_000300: -1.152e0

GenotypeQuality
all individuals: 6451
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 72
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.75e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 6.1892e5

VQSLOD
type: SiteQuality
SIO_000300: -1.911e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

GenotypeQuality
all individuals: 156
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 69
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1671
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 1.634808853118712e-3
allele num: 7952
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.71e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

DP
type: SiteQuality
SIO_000300: 6.2378e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.186e0

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 8.48e0

GenotypeQuality
all individuals: 2284
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6383
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.02880658436214e-3
allele num: 972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2944
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

DP
type: SiteQuality
SIO_000300: 6.25766e5

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.816e-1

FS
type: SiteQuality
SIO_000300: 7.094e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.65e-2

QD
type: SiteQuality
SIO_000300: 1.309e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6364
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.788566953797964e-5
allele num: 10216
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e-1

DP
type: SiteQuality
SIO_000300: 6.47551e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.249e1

MQ
type: SiteQuality
SIO_000300: 5.787e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.26e-2

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 453
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variant carriers: 1

GenotypeQuality
all individuals: 106
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 362
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1589
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 410
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.227888960619754e-4
allele num: 3098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.0648596321394e-3
allele num: 10330
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.243162605668821e-4
allele num: 8044
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 6.44826e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.61e-2

FS
type: SiteQuality
SIO_000300: 1.965e0

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30460
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 407
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variant carriers: 0

GenotypeQuality
all individuals: 18
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GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8048
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.43877e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.385e0

QD
type: SiteQuality
SIO_000300: 1.803e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.85e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.47e-1

MQ
type: SiteQuality
SIO_000300: 6.265e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.622e0

VQSLOD
type: SiteQuality
SIO_000300: -6.78e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 620
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11680
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.25e1
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GenotypeQuality
all individuals: 5657
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

South Asian
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allele count: 0
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East Asian
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allele frequency: 0.0e0
allele num: 1186
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10410
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
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FS
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ClippingRankSum
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 3094
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 1186
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10410
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
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DP
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MQ
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QD
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 166
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South Asian
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allele frequency: 0.0e0
allele num: 8034
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African
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allele frequency: 0.0e0
allele num: 3098
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10456
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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DP
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VQSLOD
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QD
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MQRankSum
type: SiteQuality
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FS
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SIO_000300: 8.31e-1

MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1196
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 6.455777921239509e-4
allele num: 3098
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10456
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.31e-1

DP
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SIO_000300: 6.38619e5

MQRankSum
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SIO_000300: 2.48e-1

ReadPosRankSum
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SIO_000300: -1.13e-1

ClippingRankSum
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VQSLOD
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MQ
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QD
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1026
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7998
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

African
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allele count: 1
allele frequency: 3.394433129667345e-4
allele num: 2946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.01e-2

FS
type: SiteQuality
SIO_000300: 3.041e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQ
type: SiteQuality
SIO_000300: 6.039e1

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.065e1

DP
type: SiteQuality
SIO_000300: 6.34981e5

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 60
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 142
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.604e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -9.46e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.23251e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
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variant carriers: 6371

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 430

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1472

African
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allele count: 2764
allele frequency: 9.557399723374828e-1
allele num: 2892
num of homozygotes: 1323

European (Finnish)
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allele frequency: 8.23076923076923e-1
allele num: 130
num of homozygotes: 44

European (Non-Finnish)
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allele count: 8290
allele frequency: 8.615672417376845e-1
allele num: 9622
num of homozygotes: 3575

South Asian
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allele frequency: 9.108352144469526e-1
allele num: 7974
num of homozygotes: 3318

Other
type: Population
allele count: 178
allele frequency: 8.98989898989899e-1
allele num: 198
num of homozygotes: 81

Latino
type: Population
allele count: 441
allele frequency: 9.036885245901639e-1
allele num: 488
num of homozygotes: 198

East Asian
type: Population
allele count: 907
allele frequency: 9.98898678414097e-1
allele num: 908
num of homozygotes: 453

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.567e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
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SIO_000300: 0.0e0

ClippingRankSum
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VQSLOD
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QD
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

DP
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SIO_000300: 6.01829e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 118
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East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7506
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.665689149560117e-4
allele num: 2728
num of homozygotes: 0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.33e-2

ReadPosRankSum
type: SiteQuality
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FS
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VQSLOD
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MQRankSum
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 134
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European (Finnish)
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allele frequency: NaN
allele num: 0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 190
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South Asian
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allele num: 7506
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQ
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VQSLOD
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BaseQRankSum
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FS
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QD
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DP
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

FS
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MQ
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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QD
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 1.332267519317879e-4
allele num: 7506
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

FS
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ClippingRankSum
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ReadPosRankSum
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DP
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VQSLOD
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MQ
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 8.474576271186441e-3
allele num: 118
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.664535038635758e-4
allele num: 7506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.263157894736842e-3
allele num: 190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2728
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.83e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.176e0

FS
type: SiteQuality
SIO_000300: 1.115e0

MQ
type: SiteQuality
SIO_000300: 5.929e1

QD
type: SiteQuality
SIO_000300: 9.99e0

DP
type: SiteQuality
SIO_000300: 2.54845e5

GenotypeQuality
all individuals: 185
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 7.993605115907274e-4
allele num: 7506
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1