6-41658393-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658393
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658393
    reference: chr 6
allele count: 162
allele frequency: 1.600474214582098e-3
allele num: 101220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.468+8A>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.468+8A>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.468+8A>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+346A>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.726+8A>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.468+8A>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.468+8A>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.510+8A>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.468+8A>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+346A>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.468+8A>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10039
  bin: 2.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8221
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24892
  bin: 2.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 4688
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5181
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: c.468+8A>T
num of homozygotes: 2
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

6-41658404-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658404
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658404
    reference: chr 6
allele count: 1
allele frequency: 9.754004018649656e-6
allele num: 102522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+335G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.465G>A
  hgvsp: ENST00000419396.1:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.723G>A
  hgvsp: ENST00000343317.6:c.723G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.465G>A
  hgvsp: ENST00000230323.4:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.507G>A
  hgvsp: ENST00000358871.2:c.507G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.465G>A
  hgvsp: ENST00000403298.4:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+335G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.465G>A
  hgvsp: ENST00000373033.1:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.465G>A
  hgvsp: ENST00000416140.1:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.465G>A
  hgvsp: ENST00000394283.1:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.465G>A
  hgvsp: ENST00000419574.1:c.465G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3734
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6403
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg155Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

6-41658405-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658405
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658405
    reference: chr 6
allele count: 1
allele frequency: 9.732549538677152e-6
allele num: 102748
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.464G>C
  hgvsp: ENSP00000230323.4:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.722G>C
  hgvsp: ENSP00000343948.6:p.Arg241Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.464G>C
  hgvsp: ENSP00000362124.1:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.506G>C
  hgvsp: ENSP00000351742.2:p.Arg169Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.464G>C
  hgvsp: ENSP00000410391.1:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.464G>C
  hgvsp: ENSP00000406491.1:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+334G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.464G>C
  hgvsp: ENSP00000384203.4:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+334G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.464G>C
  hgvsp: ENSP00000400276.1:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.464G>C
  hgvsp: ENSP00000377824.1:p.Arg155Thr
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3686
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27225
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg155Thr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

6-41658417-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658417
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658417
    reference: chr 6
allele count: 2
allele frequency: 1.910256165351774e-5
allele num: 104698
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.452C>G
  hgvsp: ENSP00000377824.1:p.Ser151Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.452C>G
  hgvsp: ENSP00000410391.1:p.Ser151Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.452C>G
  hgvsp: ENSP00000406491.1:p.Ser151Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+322C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.452C>G
  hgvsp: ENSP00000400276.1:p.Ser151Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.494C>G
  hgvsp: ENSP00000351742.2:p.Ser165Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.452C>G
  hgvsp: ENSP00000230323.4:p.Ser151Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.710C>G
  hgvsp: ENSP00000343948.6:p.Ser237Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+322C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.452C>G
  hgvsp: ENSP00000384203.4:p.Ser151Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.452C>G
  hgvsp: ENSP00000362124.1:p.Ser151Cys
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser151Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-41658426-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658426
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658426
    reference: chr 6
allele count: 1
allele frequency: 9.437345463468036e-6
allele num: 105962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+313A>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.443A>G
  hgvsp: ENSP00000406491.1:p.His148Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.701A>G
  hgvsp: ENSP00000343948.6:p.His234Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.443A>G
  hgvsp: ENSP00000410391.1:p.His148Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.443A>G
  hgvsp: ENSP00000384203.4:p.His148Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.443A>G
  hgvsp: ENSP00000377824.1:p.His148Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+313A>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.443A>G
  hgvsp: ENSP00000230323.4:p.His148Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.443A>G
  hgvsp: ENSP00000362124.1:p.His148Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.485A>G
  hgvsp: ENSP00000351742.2:p.His162Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.443A>G
  hgvsp: ENSP00000400276.1:p.His148Arg
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29828
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His148Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

6-41658447-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658447
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658447
    reference: chr 6
allele count: 1
allele frequency: 9.178522257916476e-6
allele num: 108950
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.422A>G
  hgvsp: ENSP00000230323.4:p.Asn141Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+292A>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.422A>G
  hgvsp: ENSP00000410391.1:p.Asn141Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.680A>G
  hgvsp: ENSP00000343948.6:p.Asn227Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.422A>G
  hgvsp: ENSP00000362124.1:p.Asn141Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.422A>G
  hgvsp: ENSP00000384203.4:p.Asn141Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.422A>G
  hgvsp: ENSP00000377824.1:p.Asn141Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.464A>G
  hgvsp: ENSP00000351742.2:p.Asn155Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.422A>G
  hgvsp: ENSP00000400276.1:p.Asn141Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+292A>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.422A>G
  hgvsp: ENSP00000406491.1:p.Asn141Ser
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn141Ser
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

6-41658447-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658447
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658447
    reference: chr 6
allele count: 1
allele frequency: 9.178522257916476e-6
allele num: 108950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.422A>C
  hgvsp: ENSP00000406491.1:p.Asn141Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.422A>C
  hgvsp: ENSP00000400276.1:p.Asn141Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.422A>C
  hgvsp: ENSP00000362124.1:p.Asn141Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+292A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.680A>C
  hgvsp: ENSP00000343948.6:p.Asn227Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.464A>C
  hgvsp: ENSP00000351742.2:p.Asn155Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.422A>C
  hgvsp: ENSP00000230323.4:p.Asn141Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.422A>C
  hgvsp: ENSP00000384203.4:p.Asn141Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.422A>C
  hgvsp: ENSP00000410391.1:p.Asn141Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.422A>C
  hgvsp: ENSP00000377824.1:p.Asn141Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+292A>C
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn141Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

6-41658461-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658461
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658461
    reference: chr 6
allele count: 17
allele frequency: 1.535709768920848e-4
allele num: 110698
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.408C>T
  hgvsp: ENST00000394283.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.450C>T
  hgvsp: ENST00000358871.2:c.450C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.408C>T
  hgvsp: ENST00000419396.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+278C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.666C>T
  hgvsp: ENST00000343317.6:c.666C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+278C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.408C>T
  hgvsp: ENST00000230323.4:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.408C>T
  hgvsp: ENST00000373033.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.408C>T
  hgvsp: ENST00000419574.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.408C>T
  hgvsp: ENST00000416140.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.408C>T
  hgvsp: ENST00000403298.4:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30549
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Gly136Gly
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP

6-41658461-GCCAGCGGAGGAGGACAGCACGTGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658461
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658437
    reference: chr 6
allele count: 1
allele frequency: 9.033586876004987e-6
allele num: 110698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsp: ENSP00000362124.1:p.His129_Gly136del
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsp: ENSP00000343948.6:p.His215_Gly222del
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsp: ENSP00000400276.1:p.His129_Gly136del
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsp: ENSP00000410391.1:p.His129_Gly136del
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsp: ENSP00000377824.1:p.His129_Gly136del
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsp: ENSP00000230323.4:p.His129_Gly136del
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsp: ENSP00000351742.2:p.His143_Gly150del
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsp: ENSP00000384203.4:p.His129_Gly136del
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsp: ENSP00000406491.1:p.His129_Gly136del
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30549
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His129_Gly136del
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: GCCAGCGGAGGAGGACAGCACGTGT
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/6-41658466-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658466
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658466
    reference: chr 6
allele count: 1
allele frequency: 8.981498113885396e-6
allele num: 111340
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.661G>T
  hgvsp: ENSP00000343948.6:p.Ala221Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.403G>T
  hgvsp: ENSP00000410391.1:p.Ala135Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.403G>T
  hgvsp: ENSP00000406491.1:p.Ala135Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.403G>T
  hgvsp: ENSP00000400276.1:p.Ala135Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.403G>T
  hgvsp: ENSP00000384203.4:p.Ala135Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.403G>T
  hgvsp: ENSP00000377824.1:p.Ala135Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.403G>T
  hgvsp: ENSP00000362124.1:p.Ala135Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.403G>T
  hgvsp: ENSP00000230323.4:p.Ala135Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+273G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.445G>T
  hgvsp: ENSP00000351742.2:p.Ala149Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+273G>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala135Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-41658466-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658466
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658466
    reference: chr 6
allele count: 1
allele frequency: 8.981498113885396e-6
allele num: 111340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.661G>A
  hgvsp: ENSP00000343948.6:p.Ala221Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.403G>A
  hgvsp: ENSP00000410391.1:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.403G>A
  hgvsp: ENSP00000406491.1:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+273G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.445G>A
  hgvsp: ENSP00000351742.2:p.Ala149Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+273G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.403G>A
  hgvsp: ENSP00000400276.1:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.403G>A
  hgvsp: ENSP00000362124.1:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.403G>A
  hgvsp: ENSP00000384203.4:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.403G>A
  hgvsp: ENSP00000230323.4:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.403G>A
  hgvsp: ENSP00000377824.1:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala135Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff

6-41658467-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658467
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658467
    reference: chr 6
allele count: 1
allele frequency: 8.938946992044337e-6
allele num: 111870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.402C>T
  hgvsp: ENST00000394283.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.402C>T
  hgvsp: ENST00000230323.4:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.402C>T
  hgvsp: ENST00000419574.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.660C>T
  hgvsp: ENST00000343317.6:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.402C>T
  hgvsp: ENST00000373033.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.402C>T
  hgvsp: ENST00000416140.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+272C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.402C>T
  hgvsp: ENST00000419396.1:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+272C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.402C>T
  hgvsp: ENST00000403298.4:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.444C>T
  hgvsp: ENST00000358871.2:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser134Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

6-41658473-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658473
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658473
    reference: chr 6
allele count: 12
allele frequency: 1.065265251047511e-4
allele num: 112648
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.396C>G
  hgvsp: ENST00000416140.1:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+266C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.654C>G
  hgvsp: ENST00000343317.6:c.654C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.396C>G
  hgvsp: ENST00000419574.1:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.396C>G
  hgvsp: ENST00000419396.1:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.396C>G
  hgvsp: ENST00000230323.4:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.438C>G
  hgvsp: ENST00000358871.2:c.438C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+266C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.396C>G
  hgvsp: ENST00000394283.1:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.396C>G
  hgvsp: ENST00000373033.1:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.396C>G
  hgvsp: ENST00000403298.4:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31039
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17475
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3979
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser132Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/6-41658477-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658477
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658477
    reference: chr 6
allele count: 1
allele frequency: 8.838450796344417e-6
allele num: 113142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.650T>G
  hgvsp: ENSP00000343948.6:p.Leu217Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.392T>G
  hgvsp: ENSP00000400276.1:p.Leu131Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.392T>G
  hgvsp: ENSP00000406491.1:p.Leu131Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.392T>G
  hgvsp: ENSP00000410391.1:p.Leu131Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.392T>G
  hgvsp: ENSP00000362124.1:p.Leu131Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.434T>G
  hgvsp: ENSP00000351742.2:p.Leu145Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.392T>G
  hgvsp: ENSP00000230323.4:p.Leu131Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.392T>G
  hgvsp: ENSP00000377824.1:p.Leu131Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+262T>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.392T>G
  hgvsp: ENSP00000384203.4:p.Leu131Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+262T>G
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu131Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ

6-41658481-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658481
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658481
    reference: chr 6
allele count: 330
allele frequency: 2.90574809805579e-3
allele num: 113568
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.388G>A
  hgvsp: ENSP00000230323.4:p.Val130Met
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.388G>A
  hgvsp: ENSP00000410391.1:p.Val130Met
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.430G>A
  hgvsp: ENSP00000351742.2:p.Val144Met
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.646G>A
  hgvsp: ENSP00000343948.6:p.Val216Met
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+258G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.388G>A
  hgvsp: ENSP00000377824.1:p.Val130Met
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.388G>A
  hgvsp: ENSP00000400276.1:p.Val130Met
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.388G>A
  hgvsp: ENSP00000384203.4:p.Val130Met
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.388G>A
  hgvsp: ENSP00000362124.1:p.Val130Met
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.388G>A
  hgvsp: ENSP00000406491.1:p.Val130Met
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+258G>A
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17673
  bin: 2.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31083
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 4.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 3.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
hgvs: p.Val130Met
num of homozygotes: 7
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

6-41658482-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658482
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658482
    reference: chr 6
allele count: 9
allele frequency: 7.904860610957893e-5
allele num: 113854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.645C>T
  hgvsp: ENST00000343317.6:c.645C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.387C>T
  hgvsp: ENST00000403298.4:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.387C>T
  hgvsp: ENST00000230323.4:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.429C>T
  hgvsp: ENST00000358871.2:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.387C>T
  hgvsp: ENST00000419396.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+257C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+257C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.387C>T
  hgvsp: ENST00000419574.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.387C>T
  hgvsp: ENST00000394283.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.387C>T
  hgvsp: ENST00000416140.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.387C>T
  hgvsp: ENST00000373033.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31190
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17826
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His129His
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

6-41658483-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658483
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658483
    reference: chr 6
allele count: 1
allele frequency: 8.774546794658055e-6
allele num: 113966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.386A>G
  hgvsp: ENSP00000406491.1:p.His129Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.386A>G
  hgvsp: ENSP00000377824.1:p.His129Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.386A>G
  hgvsp: ENSP00000230323.4:p.His129Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.386A>G
  hgvsp: ENSP00000410391.1:p.His129Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.386A>G
  hgvsp: ENSP00000362124.1:p.His129Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.428A>G
  hgvsp: ENSP00000351742.2:p.His143Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.386A>G
  hgvsp: ENSP00000400276.1:p.His129Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.644A>G
  hgvsp: ENSP00000343948.6:p.His215Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+256A>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+256A>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.386A>G
  hgvsp: ENSP00000384203.4:p.His129Arg
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His129Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

6-41658489-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658489
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658489
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 114756
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.380C>A
  hgvsp: ENSP00000406491.1:p.Ala127Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.380C>A
  hgvsp: ENSP00000400276.1:p.Ala127Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.638C>A
  hgvsp: ENSP00000343948.6:p.Ala213Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+250C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.380C>A
  hgvsp: ENSP00000377824.1:p.Ala127Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.380C>A
  hgvsp: ENSP00000410391.1:p.Ala127Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.380C>A
  hgvsp: ENSP00000384203.4:p.Ala127Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.380C>A
  hgvsp: ENSP00000230323.4:p.Ala127Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.422C>A
  hgvsp: ENSP00000351742.2:p.Ala141Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+250C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.380C>A
  hgvsp: ENSP00000362124.1:p.Ala127Asp
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31421
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18089
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala127Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

6-41658490-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658490
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658490
    reference: chr 6
allele count: 1
allele frequency: 8.71064964025017e-6
allele num: 114802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.379G>A
  hgvsp: ENSP00000384203.4:p.Ala127Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.379G>A
  hgvsp: ENSP00000406491.1:p.Ala127Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.637G>A
  hgvsp: ENSP00000343948.6:p.Ala213Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+249G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.379G>A
  hgvsp: ENSP00000230323.4:p.Ala127Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.379G>A
  hgvsp: ENSP00000362124.1:p.Ala127Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.379G>A
  hgvsp: ENSP00000410391.1:p.Ala127Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.379G>A
  hgvsp: ENSP00000377824.1:p.Ala127Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.421G>A
  hgvsp: ENSP00000351742.2:p.Ala141Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.379G>A
  hgvsp: ENSP00000400276.1:p.Ala127Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+249G>A
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala127Thr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

6-41658492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658492
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658492
    reference: chr 6
allele count: 5
allele frequency: 4.342992147870196e-5
allele num: 115128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.377G>A
  hgvsp: ENSP00000362124.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.377G>A
  hgvsp: ENSP00000230323.4:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.377G>A
  hgvsp: ENSP00000406491.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.377G>A
  hgvsp: ENSP00000400276.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.419G>A
  hgvsp: ENSP00000351742.2:p.Arg140Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+247G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+247G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.377G>A
  hgvsp: ENSP00000410391.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.377G>A
  hgvsp: ENSP00000377824.1:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.635G>A
  hgvsp: ENSP00000343948.6:p.Arg212Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.377G>A
  hgvsp: ENSP00000384203.4:p.Arg126Gln
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31553
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18229
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg126Gln
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

6-41658495-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658495
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658495
    reference: chr 6
allele count: 1
allele frequency: 8.631851532153647e-6
allele num: 115850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.374T>C
  hgvsp: ENSP00000384203.4:p.Val125Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.374T>C
  hgvsp: ENSP00000377824.1:p.Val125Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.374T>C
  hgvsp: ENSP00000410391.1:p.Val125Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.374T>C
  hgvsp: ENSP00000400276.1:p.Val125Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.416T>C
  hgvsp: ENSP00000351742.2:p.Val139Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+244T>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+244T>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.632T>C
  hgvsp: ENSP00000343948.6:p.Val211Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.374T>C
  hgvsp: ENSP00000362124.1:p.Val125Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.374T>C
  hgvsp: ENSP00000406491.1:p.Val125Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.374T>C
  hgvsp: ENSP00000230323.4:p.Val125Ala
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val125Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

6-41658508-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658508
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658508
    reference: chr 6
allele count: 15
allele frequency: 1.276226453621931e-4
allele num: 117534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.619G>A
  hgvsp: ENSP00000343948.6:p.Ala207Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.361G>A
  hgvsp: ENSP00000230323.4:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.361G>A
  hgvsp: ENSP00000400276.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.361G>A
  hgvsp: ENSP00000377824.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.361G>A
  hgvsp: ENSP00000410391.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.361G>A
  hgvsp: ENSP00000384203.4:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+231G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+231G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.403G>A
  hgvsp: ENSP00000351742.2:p.Ala135Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.361G>A
  hgvsp: ENSP00000362124.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.361G>A
  hgvsp: ENSP00000406491.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4256
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19019
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32389
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala121Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD

6-41658509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658509
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658509
    reference: chr 6
allele count: 1
allele frequency: 8.485074753508579e-6
allele num: 117854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.360C>T
  hgvsp: ENST00000403298.4:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+230C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.360C>T
  hgvsp: ENST00000419574.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.360C>T
  hgvsp: ENST00000419396.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.360C>T
  hgvsp: ENST00000416140.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.360C>T
  hgvsp: ENST00000394283.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.618C>T
  hgvsp: ENST00000343317.6:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.360C>T
  hgvsp: ENST00000373033.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.402C>T
  hgvsp: ENST00000358871.2:c.402C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+230C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.360C>T
  hgvsp: ENST00000230323.4:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala120Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

6-41658519-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658519
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658519
    reference: chr 6
allele count: 1
allele frequency: 8.411560849231184e-6
allele num: 118884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.350C>T
  hgvsp: ENSP00000362124.1:p.Pro117Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.350C>T
  hgvsp: ENSP00000410391.1:p.Pro117Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.608C>T
  hgvsp: ENSP00000343948.6:p.Pro203Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.350C>T
  hgvsp: ENSP00000384203.4:p.Pro117Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.350C>T
  hgvsp: ENSP00000406491.1:p.Pro117Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+220C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.392C>T
  hgvsp: ENSP00000351742.2:p.Pro131Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.350C>T
  hgvsp: ENSP00000400276.1:p.Pro117Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.350C>T
  hgvsp: ENSP00000377824.1:p.Pro117Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.350C>T
  hgvsp: ENSP00000230323.4:p.Pro117Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+220C>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro117Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-41658524-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658524
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658524
    reference: chr 6
allele count: 21
allele frequency: 1.762780156131957e-4
allele num: 119130
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.345G>A
  hgvsp: ENST00000230323.4:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.345G>A
  hgvsp: ENST00000419574.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.345G>A
  hgvsp: ENST00000373033.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.345G>A
  hgvsp: ENST00000419396.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.387G>A
  hgvsp: ENST00000358871.2:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.345G>A
  hgvsp: ENST00000403298.4:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.603G>A
  hgvsp: ENST00000343317.6:c.603G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+215G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.345G>A
  hgvsp: ENST00000394283.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.345G>A
  hgvsp: ENST00000416140.1:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+215G>A
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33125
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro115Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

6-41658525-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658525
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658525
    reference: chr 6
allele count: 2
allele frequency: 1.677486454296882e-5
allele num: 119226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.344C>T
  hgvsp: ENSP00000384203.4:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.344C>T
  hgvsp: ENSP00000362124.1:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.386C>T
  hgvsp: ENSP00000351742.2:p.Pro129Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.344C>T
  hgvsp: ENSP00000230323.4:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.344C>T
  hgvsp: ENSP00000410391.1:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.344C>T
  hgvsp: ENSP00000406491.1:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+214C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+214C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.602C>T
  hgvsp: ENSP00000343948.6:p.Pro201Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.344C>T
  hgvsp: ENSP00000377824.1:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.344C>T
  hgvsp: ENSP00000400276.1:p.Pro115Leu
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19594
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro115Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-41658526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658526
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658526
    reference: chr 6
allele count: 15
allele frequency: 1.257250142488349e-4
allele num: 119308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.343C>T
  hgvsp: ENSP00000410391.1:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.601C>T
  hgvsp: ENSP00000343948.6:p.Pro201Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.343C>T
  hgvsp: ENSP00000362124.1:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.343C>T
  hgvsp: ENSP00000230323.4:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.343C>T
  hgvsp: ENSP00000406491.1:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.385C>T
  hgvsp: ENSP00000351742.2:p.Pro129Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+213C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+213C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.343C>T
  hgvsp: ENSP00000384203.4:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.343C>T
  hgvsp: ENSP00000400276.1:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.343C>T
  hgvsp: ENSP00000377824.1:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19624
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro115Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

6-41658528-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658528
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658528
    reference: chr 6
allele count: 1
allele frequency: 8.372544751251695e-6
allele num: 119438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.341C>G
  hgvsp: ENSP00000384203.4:p.Ser114Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.341C>G
  hgvsp: ENSP00000406491.1:p.Ser114Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+211C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.341C>G
  hgvsp: ENSP00000230323.4:p.Ser114Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.341C>G
  hgvsp: ENSP00000377824.1:p.Ser114Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+211C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.341C>G
  hgvsp: ENSP00000400276.1:p.Ser114Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.383C>G
  hgvsp: ENSP00000351742.2:p.Ser128Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.341C>G
  hgvsp: ENSP00000362124.1:p.Ser114Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.341C>G
  hgvsp: ENSP00000410391.1:p.Ser114Cys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.599C>G
  hgvsp: ENSP00000343948.6:p.Ser200Cys
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser114Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

6-41658534-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658534
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658534
    reference: chr 6
allele count: 1
allele frequency: 8.356452852893003e-6
allele num: 119668
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+205A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.335A>C
  hgvsp: ENSP00000384203.4:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.335A>C
  hgvsp: ENSP00000406491.1:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.335A>C
  hgvsp: ENSP00000400276.1:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.593A>C
  hgvsp: ENSP00000343948.6:p.Gln198Pro
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.335A>C
  hgvsp: ENSP00000230323.4:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+205A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.377A>C
  hgvsp: ENSP00000351742.2:p.Gln126Pro
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.335A>C
  hgvsp: ENSP00000410391.1:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.335A>C
  hgvsp: ENSP00000362124.1:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.335A>C
  hgvsp: ENSP00000377824.1:p.Gln112Pro
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln112Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

6-41658537-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658537
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658537
    reference: chr 6
allele count: 6
allele frequency: 5.009016229212583e-5
allele num: 119784
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.332C>A
  hgvsp: ENSP00000406491.1:p.Ala111Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+202C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+202C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.332C>A
  hgvsp: ENSP00000410391.1:p.Ala111Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.332C>A
  hgvsp: ENSP00000384203.4:p.Ala111Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.590C>A
  hgvsp: ENSP00000343948.6:p.Ala197Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.332C>A
  hgvsp: ENSP00000362124.1:p.Ala111Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.374C>A
  hgvsp: ENSP00000351742.2:p.Ala125Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.332C>A
  hgvsp: ENSP00000400276.1:p.Ala111Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.332C>A
  hgvsp: ENSP00000377824.1:p.Ala111Asp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.332C>A
  hgvsp: ENSP00000230323.4:p.Ala111Asp
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19860
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala111Asp
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

6-41658538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658538
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658538
    reference: chr 6
allele count: 6
allele frequency: 5.008598093393659e-5
allele num: 119794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.373G>A
  hgvsp: ENSP00000351742.2:p.Ala125Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.331G>A
  hgvsp: ENSP00000400276.1:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+201G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.331G>A
  hgvsp: ENSP00000406491.1:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.331G>A
  hgvsp: ENSP00000384203.4:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.331G>A
  hgvsp: ENSP00000410391.1:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+201G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.331G>A
  hgvsp: ENSP00000362124.1:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.589G>A
  hgvsp: ENSP00000343948.6:p.Ala197Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.331G>A
  hgvsp: ENSP00000230323.4:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.331G>A
  hgvsp: ENSP00000377824.1:p.Ala111Thr
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19889
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala111Thr
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-41658551-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658551
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658551
    reference: chr 6
allele count: 3
allele frequency: 2.49912530614285e-5
allele num: 120042
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.318C>T
  hgvsp: ENST00000230323.4:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.318C>T
  hgvsp: ENST00000394283.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.360C>T
  hgvsp: ENST00000358871.2:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.318C>T
  hgvsp: ENST00000419396.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.318C>T
  hgvsp: ENST00000373033.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.576C>T
  hgvsp: ENST00000343317.6:c.576C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+188C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.318C>T
  hgvsp: ENST00000403298.4:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.318C>T
  hgvsp: ENST00000416140.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.318C>T
  hgvsp: ENST00000419574.1:c.318C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+188C>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala106Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

6-41658553-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658553
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658553
    reference: chr 6
allele count: 2
allele frequency: 1.666194578202842e-5
allele num: 120034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+186G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.316G>A
  hgvsp: ENSP00000384203.4:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+186G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.316G>A
  hgvsp: ENSP00000362124.1:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.316G>A
  hgvsp: ENSP00000400276.1:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.316G>A
  hgvsp: ENSP00000406491.1:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.316G>A
  hgvsp: ENSP00000410391.1:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.358G>A
  hgvsp: ENSP00000351742.2:p.Ala120Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.574G>A
  hgvsp: ENSP00000343948.6:p.Ala192Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.316G>A
  hgvsp: ENSP00000377824.1:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.316G>A
  hgvsp: ENSP00000230323.4:p.Ala106Thr
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20060
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala106Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

6-41658563-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658563
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658563
    reference: chr 6
allele count: 1
allele frequency: 8.336807002917883e-6
allele num: 119950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+176C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.306C>G
  hgvsp: ENSP00000377824.1:p.Asn102Lys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.306C>G
  hgvsp: ENSP00000406491.1:p.Asn102Lys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.348C>G
  hgvsp: ENSP00000351742.2:p.Asn116Lys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.306C>G
  hgvsp: ENSP00000230323.4:p.Asn102Lys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.306C>G
  hgvsp: ENSP00000384203.4:p.Asn102Lys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.564C>G
  hgvsp: ENSP00000343948.6:p.Asn188Lys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+176C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.306C>G
  hgvsp: ENSP00000400276.1:p.Asn102Lys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.306C>G
  hgvsp: ENSP00000410391.1:p.Asn102Lys
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.306C>G
  hgvsp: ENSP00000362124.1:p.Asn102Lys
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn102Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP

6-41658566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658566
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658566
    reference: chr 6
allele count: 16629
allele frequency: 1.384849847599061e-1
allele num: 120078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.303G>A
  hgvsp: ENST00000373033.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+173G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.345G>A
  hgvsp: ENST00000358871.2:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.303G>A
  hgvsp: ENST00000419396.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+173G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.303G>A
  hgvsp: ENST00000394283.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.303G>A
  hgvsp: ENST00000403298.4:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.303G>A
  hgvsp: ENST00000416140.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.561G>A
  hgvsp: ENST00000343317.6:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.303G>A
  hgvsp: ENST00000230323.4:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.303G>A
  hgvsp: ENST00000419574.1:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25920
  bin: 2.25e1
  variant carriers: 486
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 6.25e1
  variant carriers: 1259
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 9.75e1
  variant carriers: 879
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.75e1
  variant carriers: 737
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 1118
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.75e1
  variant carriers: 304
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 4.25e1
  variant carriers: 1309
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 8.25e1
  variant carriers: 557
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 4.75e1
  variant carriers: 1455
genotype depth: GenotypeDepth
  all individuals: 16396
  bin: 2.75e1
  variant carriers: 730
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 1094
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 3.25e1
  variant carriers: 923
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 8.75e1
  variant carriers: 427
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 7.25e1
  variant carriers: 884
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 5.25e1
  variant carriers: 1486
genotype quality: GenotypeQuality
hgvs: p.Gly101Gly
num of homozygotes: 1192
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

6-41658569-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658569
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658569
    reference: chr 6
allele count: 1
allele frequency: 8.354079296920687e-6
allele num: 119702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+170T>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.300T>C
  hgvsp: ENST00000419574.1:c.300T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.300T>C
  hgvsp: ENST00000373033.1:c.300T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.558T>C
  hgvsp: ENST00000343317.6:c.558T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.300T>C
  hgvsp: ENST00000419396.1:c.300T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+170T>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.300T>C
  hgvsp: ENST00000394283.1:c.300T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.300T>C
  hgvsp: ENST00000403298.4:c.300T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.342T>C
  hgvsp: ENST00000358871.2:c.342T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.300T>C
  hgvsp: ENST00000230323.4:c.300T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.300T>C
  hgvsp: ENST00000416140.1:c.300T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr100Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-41658578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658578
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658578
    reference: chr 6
allele count: 2
allele frequency: 1.677120719149364e-5
allele num: 119252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.549C>T
  hgvsp: ENST00000343317.6:c.549C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+161C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.291C>T
  hgvsp: ENST00000419396.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.291C>T
  hgvsp: ENST00000403298.4:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.291C>T
  hgvsp: ENST00000373033.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+161C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.291C>T
  hgvsp: ENST00000394283.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.291C>T
  hgvsp: ENST00000230323.4:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.333C>T
  hgvsp: ENST00000358871.2:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.291C>T
  hgvsp: ENST00000419574.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.291C>T
  hgvsp: ENST00000416140.1:c.291C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27915
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser97Ser
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

6-41658587-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658587
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658587
    reference: chr 6
allele count: 4
allele frequency: 3.373420817379864e-5
allele num: 118574
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.324G>A
  hgvsp: ENST00000358871.2:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+152G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.282G>A
  hgvsp: ENST00000416140.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+152G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.282G>A
  hgvsp: ENST00000230323.4:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.282G>A
  hgvsp: ENST00000373033.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.282G>A
  hgvsp: ENST00000419574.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.282G>A
  hgvsp: ENST00000419396.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.282G>A
  hgvsp: ENST00000403298.4:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.540G>A
  hgvsp: ENST00000343317.6:c.540G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.282G>A
  hgvsp: ENST00000394283.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23234
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu94Glu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-41658591-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658591
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658591
    reference: chr 6
allele count: 4
allele frequency: 3.385756123986389e-5
allele num: 118142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.536G>T
  hgvsp: ENSP00000343948.6:p.Arg179Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.320G>T
  hgvsp: ENSP00000351742.2:p.Arg107Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.278G>T
  hgvsp: ENSP00000410391.1:p.Arg93Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+148G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.278G>T
  hgvsp: ENSP00000362124.1:p.Arg93Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.278G>T
  hgvsp: ENSP00000384203.4:p.Arg93Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+148G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.278G>T
  hgvsp: ENSP00000230323.4:p.Arg93Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.278G>T
  hgvsp: ENSP00000406491.1:p.Arg93Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.278G>T
  hgvsp: ENSP00000400276.1:p.Arg93Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.278G>T
  hgvsp: ENSP00000377824.1:p.Arg93Leu
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27187
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg93Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

6-41658591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658591
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658591
    reference: chr 6
allele count: 1
allele frequency: 8.464390309965973e-6
allele num: 118142
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.278G>A
  hgvsp: ENSP00000410391.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+148G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.278G>A
  hgvsp: ENSP00000384203.4:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.278G>A
  hgvsp: ENSP00000406491.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.278G>A
  hgvsp: ENSP00000230323.4:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.320G>A
  hgvsp: ENSP00000351742.2:p.Arg107Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.278G>A
  hgvsp: ENSP00000400276.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.536G>A
  hgvsp: ENSP00000343948.6:p.Arg179Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+148G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.278G>A
  hgvsp: ENSP00000377824.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.278G>A
  hgvsp: ENSP00000362124.1:p.Arg93Gln
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg93Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-41658592-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658592
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658592
    reference: chr 6
allele count: 1
allele frequency: 8.470125866070369e-6
allele num: 118062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.277C>T
  hgvsp: ENSP00000410391.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.277C>T
  hgvsp: ENSP00000406491.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.277C>T
  hgvsp: ENSP00000384203.4:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.319C>T
  hgvsp: ENSP00000351742.2:p.Arg107Trp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.277C>T
  hgvsp: ENSP00000377824.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.277C>T
  hgvsp: ENSP00000230323.4:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.535C>T
  hgvsp: ENSP00000343948.6:p.Arg179Trp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.277C>T
  hgvsp: ENSP00000400276.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+147C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.277C>T
  hgvsp: ENSP00000362124.1:p.Arg93Trp
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+147C>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg93Trp
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

6-41658592-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658592
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658592
    reference: chr 6
allele count: 1
allele frequency: 8.470125866070369e-6
allele num: 118062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+147C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.277C>A
  hgvsp: ENST00000230323.4:c.277C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.319C>A
  hgvsp: ENST00000358871.2:c.319C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.535C>A
  hgvsp: ENST00000343317.6:c.535C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.277C>A
  hgvsp: ENST00000373033.1:c.277C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.277C>A
  hgvsp: ENST00000419574.1:c.277C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.277C>A
  hgvsp: ENST00000416140.1:c.277C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.277C>A
  hgvsp: ENST00000394283.1:c.277C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+147C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.277C>A
  hgvsp: ENST00000403298.4:c.277C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.277C>A
  hgvsp: ENST00000419396.1:c.277C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23155
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg93Arg
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

6-41658599-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658599
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658599
    reference: chr 6
allele count: 1
allele frequency: 8.529075618784437e-6
allele num: 117246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.270G>C
  hgvsp: ENSP00000410391.1:p.Gln90His
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.270G>C
  hgvsp: ENSP00000362124.1:p.Gln90His
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.270G>C
  hgvsp: ENSP00000230323.4:p.Gln90His
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+140G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.312G>C
  hgvsp: ENSP00000351742.2:p.Gln104His
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.270G>C
  hgvsp: ENSP00000384203.4:p.Gln90His
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.270G>C
  hgvsp: ENSP00000400276.1:p.Gln90His
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.270G>C
  hgvsp: ENSP00000406491.1:p.Gln90His
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.528G>C
  hgvsp: ENSP00000343948.6:p.Gln176His
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.270G>C
  hgvsp: ENSP00000377824.1:p.Gln90His
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+140G>C
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln90His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

6-41658608-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658608
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658608
    reference: chr 6
allele count: 5
allele frequency: 4.310865104409153e-5
allele num: 115986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.261G>A
  hgvsp: ENST00000373033.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.261G>A
  hgvsp: ENST00000230323.4:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.261G>A
  hgvsp: ENST00000416140.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.261G>A
  hgvsp: ENST00000403298.4:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+131G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.261G>A
  hgvsp: ENST00000419396.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.303G>A
  hgvsp: ENST00000358871.2:c.303G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.519G>A
  hgvsp: ENST00000343317.6:c.519G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.261G>A
  hgvsp: ENST00000394283.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+131G>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.261G>A
  hgvsp: ENST00000419574.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26165
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser87Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-41658620-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658620
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658620
    reference: chr 6
allele count: 1
allele frequency: 8.732861758798358e-6
allele num: 114510
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.507T>C
  hgvsp: ENST00000343317.6:c.507T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.291T>C
  hgvsp: ENST00000358871.2:c.291T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.249T>C
  hgvsp: ENST00000373033.1:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.249T>C
  hgvsp: ENST00000394283.1:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.249T>C
  hgvsp: ENST00000419574.1:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.249T>C
  hgvsp: ENST00000416140.1:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+119T>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.249T>C
  hgvsp: ENST00000419396.1:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+119T>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.249T>C
  hgvsp: ENST00000230323.4:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.249T>C
  hgvsp: ENST00000403298.4:c.249T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25967
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His83His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

6-41658658-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658658
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658658
    reference: chr 6
allele count: 2
allele frequency: 1.844507977497003e-5
allele num: 108430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.214-3C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.214-3C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+81C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.214-3C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.214-3C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+81C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.472-3C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.214-3C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.214-3C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.214-3C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.214-3C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.256-3C>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.214-3C>T
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

6-41658666-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658666
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658666
    reference: chr 6
allele count: 1
allele frequency: 9.474003334849174e-6
allele num: 105552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.214-11C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.256-11C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.214-11C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.214-11C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.214-11C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.214-11C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.214-11C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.472-11C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+73C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+73C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.214-11C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.214-11C>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-41658677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658677
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658677
    reference: chr 6
allele count: 3
allele frequency: 3.006253006253006e-5
allele num: 99792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.472-22C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.214-22C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.256-22C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.214-22C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.214-22C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.214-22C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+62C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.214-22C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+62C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.214-22C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.214-22C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.214-22C>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-41658681-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658681
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658681
    reference: chr 6
allele count: 1
allele frequency: 1.038961038961039e-5
allele num: 96250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.214-26G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+58G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.256-26G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.214-26G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.214-26G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.214-26G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.214-26G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+58G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.472-26G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.214-26G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.214-26G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.214-26G>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15657
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum

6-41658681-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658681
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658681
    reference: chr 6
allele count: 1
allele frequency: 1.038961038961039e-5
allele num: 96250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.214-26G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.214-26G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.472-26G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.256-26G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.214-26G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+58G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.214-26G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.214-26G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.214-26G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+58G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.214-26G>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.214-26G>C
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15657
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10865
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10076
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

6-41658685-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658685
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658685
    reference: chr 6
allele count: 1
allele frequency: 1.065257685834203e-5
allele num: 93874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+54C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.214-30C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.214-30C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.214-30C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+54C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.214-30C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.472-30C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.214-30C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.256-30C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.214-30C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.214-30C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.214-30C>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14468
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

6-41658694-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658694
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658694
    reference: chr 6
allele count: 1
allele frequency: 1.162736616901539e-5
allele num: 86004
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.214-39C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+45C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.214-39C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.214-39C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.214-39C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.214-39C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.472-39C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.214-39C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+45C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.214-39C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.256-39C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.214-39C>A
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9681
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10922
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14521
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

6-41658701-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658701
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658701
    reference: chr 6
allele count: 1
allele frequency: 1.213592233009709e-5
allele num: 82400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.213+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.213+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.213+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.213+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.471+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.213+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.255+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.213+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.213+38A>C
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.213+38A>C
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

6-41658711-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658711
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658711
    reference: chr 6
allele count: 3
allele frequency: 4.08452238318266e-5
allele num: 73448
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.213+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.213+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.213+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.213+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.213+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.471+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.255+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.213+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.213+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+28C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.213+28C>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19591
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

6-41658713-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658713
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658713
    reference: chr 6
allele count: 1
allele frequency: 1.401777453811433e-5
allele num: 71338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.213+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.255+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.213+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.213+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.471+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.213+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.213+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.213+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.213+26C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.213+26C>A
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20177
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4983
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18450
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

6-41658716-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658716
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658716
    reference: chr 6
allele count: 1
allele frequency: 1.461347362268011e-5
allele num: 68430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.213+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.213+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.255+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.213+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.471+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.213+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.213+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.213+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.213+23C>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.213+23C>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-41658724-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658724
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658724
    reference: chr 6
allele count: 1
allele frequency: 1.688618709895306e-5
allele num: 59220
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.213+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.471+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.213+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.255+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.213+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.213+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.213+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.213+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.213+15G>T
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.213+15G>T
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4591
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18501
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-41658732-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658732
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658732
    reference: chr 6
allele count: 1
allele frequency: 1.84202770409667e-5
allele num: 54288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.213+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.255+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.213+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.213+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.471+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.213+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.213+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.213+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.213+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+7C>G
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.213+7C>G
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26528
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.213+7C>G
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

6-41658732-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658732
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658732
    reference: chr 6
allele count: 1
allele frequency: 1.84202770409667e-5
allele num: 54288
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.471+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.255+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.213+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.213+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.213+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.213+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.213+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.213+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.42+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.213+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.213+7C>A
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.213+7C>A
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3921
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.213+7C>A
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

6-41658742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658742
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658742
    reference: chr 6
allele count: 1
allele frequency: 2.100222623598102e-5
allele num: 47614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.210G>A
  hgvsp: ENST00000424495.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.210G>A
  hgvsp: ENST00000416140.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.468G>A
  hgvsp: ENST00000343317.6:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000393874
  ensembl transcript: ENST00000445214
  gene symbol: TFEB
  hgvsc: ENST00000445214.1:c.210G>A
  hgvsp: ENST00000445214.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.210G>A
  hgvsp: ENST00000394283.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.210G>A
  hgvsp: ENST00000420312.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.210G>A
  hgvsp: ENST00000419574.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.252G>A
  hgvsp: ENST00000358871.2:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.210G>A
  hgvsp: ENST00000419396.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.210G>A
  hgvsp: ENST00000373033.1:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.210G>A
  hgvsp: ENST00000230323.4:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.39G>A
  hgvsp: ENST00000406563.2:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.210G>A
  hgvsp: ENST00000403298.4:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2054
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu70Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

6-41658761-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658761
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658761
    reference: chr 6
allele count: 3
allele frequency: 7.58418444736576e-5
allele num: 39556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.449C>T
  hgvsp: ENSP00000343948.6:p.Pro150Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.191C>T
  hgvsp: ENSP00000362124.1:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.20C>T
  hgvsp: ENSP00000383998.2:p.Pro7Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.191C>T
  hgvsp: ENSP00000406491.1:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.191C>T
  hgvsp: ENSP00000412551.1:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.191C>T
  hgvsp: ENSP00000230323.4:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.191C>T
  hgvsp: ENSP00000396168.1:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.191C>T
  hgvsp: ENSP00000384203.4:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.233C>T
  hgvsp: ENSP00000351742.2:p.Pro78Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.191C>T
  hgvsp: ENSP00000400276.1:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.191C>T
  hgvsp: ENSP00000410391.1:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000393874
  ensembl transcript: ENST00000445214
  gene symbol: TFEB
  hgvsc: ENST00000445214.1:c.191C>T
  hgvsp: ENSP00000393874.1:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.191C>T
  hgvsp: ENSP00000377824.1:p.Pro64Leu
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13138
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3095
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29167
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10588
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro64Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

6-41658769-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658769
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658769
    reference: chr 6
allele count: 4
allele frequency: 1.103630945811721e-4
allele num: 36244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000393874
  ensembl transcript: ENST00000445214
  gene symbol: TFEB
  hgvsc: ENST00000445214.1:c.183G>A
  hgvsp: ENST00000445214.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.183G>A
  hgvsp: ENST00000420312.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.183G>A
  hgvsp: ENST00000424495.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.183G>A
  hgvsp: ENST00000403298.4:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.183G>A
  hgvsp: ENST00000419574.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.225G>A
  hgvsp: ENST00000358871.2:c.225G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.183G>A
  hgvsp: ENST00000416140.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.183G>A
  hgvsp: ENST00000419396.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.12G>A
  hgvsp: ENST00000406563.2:c.12G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.441G>A
  hgvsp: ENST00000343317.6:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.183G>A
  hgvsp: ENST00000230323.4:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.183G>A
  hgvsp: ENST00000394283.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.183G>A
  hgvsp: ENST00000373033.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11826
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29366
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11617
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser61Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

6-41658770-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658770
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658770
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 36162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000393874
  ensembl transcript: ENST00000445214
  gene symbol: TFEB
  hgvsc: ENST00000445214.1:c.182C>T
  hgvsp: ENSP00000393874.1:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.224C>T
  hgvsp: ENSP00000351742.2:p.Ser75Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.182C>T
  hgvsp: ENSP00000396168.1:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.182C>T
  hgvsp: ENSP00000377824.1:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.182C>T
  hgvsp: ENSP00000384203.4:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.182C>T
  hgvsp: ENSP00000406491.1:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.182C>T
  hgvsp: ENSP00000400276.1:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.182C>T
  hgvsp: ENSP00000410391.1:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.440C>T
  hgvsp: ENSP00000343948.6:p.Ser147Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.182C>T
  hgvsp: ENSP00000230323.4:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000383998
  ensembl transcript: ENST00000406563
  gene symbol: TFEB
  hgvsc: ENST00000406563.2:c.11C>T
  hgvsp: ENSP00000383998.2:p.Ser4Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.182C>T
  hgvsp: ENSP00000412551.1:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.182C>T
  hgvsp: ENSP00000362124.1:p.Ser61Leu
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12091
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser61Leu
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

6-41658782-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658782
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658782
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 34388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.170T>C
  hgvsp: ENSP00000400276.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000393874
  ensembl transcript: ENST00000445214
  gene symbol: TFEB
  hgvsc: ENST00000445214.1:c.170T>C
  hgvsp: ENSP00000393874.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.170T>C
  hgvsp: ENSP00000362124.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.212T>C
  hgvsp: ENSP00000351742.2:p.Val71Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.170T>C
  hgvsp: ENSP00000230323.4:p.Val57Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.170T>C
  hgvsp: ENSP00000396168.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.170T>C
  hgvsp: ENSP00000384203.4:p.Val57Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.170T>C
  hgvsp: ENSP00000406491.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.170T>C
  hgvsp: ENSP00000410391.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.428T>C
  hgvsp: ENSP00000343948.6:p.Val143Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.170T>C
  hgvsp: ENSP00000377824.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.170T>C
  hgvsp: ENSP00000412551.1:p.Val57Ala
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28760
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val57Ala
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS

6-41658783-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658783
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658783
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 34072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.169G>A
  hgvsp: ENSP00000396168.1:p.Val57Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.169G>A
  hgvsp: ENSP00000400276.1:p.Val57Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.427G>A
  hgvsp: ENSP00000343948.6:p.Val143Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.169G>A
  hgvsp: ENSP00000410391.1:p.Val57Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.169G>A
  hgvsp: ENSP00000384203.4:p.Val57Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.169G>A
  hgvsp: ENSP00000412551.1:p.Val57Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.169G>A
  hgvsp: ENSP00000230323.4:p.Val57Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.211G>A
  hgvsp: ENSP00000351742.2:p.Val71Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.169G>A
  hgvsp: ENSP00000362124.1:p.Val57Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.169G>A
  hgvsp: ENSP00000406491.1:p.Val57Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000393874
  ensembl transcript: ENST00000445214
  gene symbol: TFEB
  hgvsc: ENST00000445214.1:c.169G>A
  hgvsp: ENSP00000393874.1:p.Val57Ile
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.169G>A
  hgvsp: ENSP00000377824.1:p.Val57Ile
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9336
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28672
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val57Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

6-41658784-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658784
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658784
    reference: chr 6
allele count: 83
allele frequency: 2.415599534342258e-3
allele num: 34360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.210C>T
  hgvsp: ENST00000358871.2:c.210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.168C>T
  hgvsp: ENST00000403298.4:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.168C>T
  hgvsp: ENST00000424495.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.168C>T
  hgvsp: ENST00000419396.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.168C>T
  hgvsp: ENST00000230323.4:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.426C>T
  hgvsp: ENST00000343317.6:c.426C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.168C>T
  hgvsp: ENST00000419574.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.168C>T
  hgvsp: ENST00000416140.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.168C>T
  hgvsp: ENST00000373033.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.168C>T
  hgvsp: ENST00000394283.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000393874
  ensembl transcript: ENST00000445214
  gene symbol: TFEB
  hgvsc: ENST00000445214.1:c.168C>T
  hgvsp: ENST00000445214.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.168C>T
  hgvsp: ENST00000420312.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13778
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9187
  bin: 1.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 28575
  bin: 7.5e0
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2081
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro56Pro
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-41658785-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658785
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658785
    reference: chr 6
allele count: 1
allele frequency: 2.906469801778759e-5
allele num: 34406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.167C>G
  hgvsp: ENSP00000396168.1:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.167C>G
  hgvsp: ENSP00000362124.1:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.167C>G
  hgvsp: ENSP00000412551.1:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.167C>G
  hgvsp: ENSP00000384203.4:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000343948
  ensembl transcript: ENST00000343317
  gene symbol: TFEB
  hgvsc: ENST00000343317.6:c.425C>G
  hgvsp: ENSP00000343948.6:p.Pro142Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.167C>G
  hgvsp: ENSP00000230323.4:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.167C>G
  hgvsp: ENSP00000400276.1:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000410391
  ensembl transcript: ENST00000419396
  gene symbol: TFEB
  hgvsc: ENST00000419396.1:c.167C>G
  hgvsp: ENSP00000410391.1:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.209C>G
  hgvsp: ENSP00000351742.2:p.Pro70Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.167C>G
  hgvsp: ENSP00000377824.1:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000393874
  ensembl transcript: ENST00000445214
  gene symbol: TFEB
  hgvsc: ENST00000445214.1:c.167C>G
  hgvsp: ENSP00000393874.1:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.167C>G
  hgvsp: ENSP00000406491.1:p.Pro56Arg
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13887
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro56Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

6-41658787-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 41658787
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 41658787
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 33854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000412551
  ensembl transcript: ENST00000420312
  gene symbol: TFEB
  hgvsc: ENST00000420312.1:c.165C>T
  hgvsp: ENST00000420312.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000396168
  ensembl transcript: ENST00000424495
  gene symbol: TFEB
  hgvsc: ENST00000424495.1:c.165C>T
  hgvsp: ENST00000424495.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000384203
  ensembl transcript: ENST00000403298
  gene symbol: TFEB
  hgvsc: ENST00000403298.4:c.165C>T
  hgvsp: ENST00000403298.4:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000393874
  ensembl transcript: ENST00000445214
  gene symbol: TFEB
  hgvsc: ENST00000445214.1:c.165C>T
  hgvsp: ENST00000445214.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000351742
  ensembl transcript: ENST00000358871
  gene symbol: TFEB
  hgvsc: ENST00000358871.2:c.207C>T
  hgvsp: ENST00000358871.2:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000406491
  ensembl transcript: ENST00000416140
  gene symbol: TFEB
  hgvsc: ENST00000416140.1:c.165C>T
  hgvsp: ENST00000416140.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000400276
  ensembl transcript: ENST00000419574
  gene symbol: TFEB
  hgvsc: ENST00000419574.1:c.165C>T
  hgvsp: ENST00000419574.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000362124
  ensembl transcript: ENST00000373033
  gene symbol: TFEB
  hgvsc: ENST00000373033.1:c.165C>T
  hgvsp: ENST00000373033.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000377824
  ensembl transcript: ENST00000394283
  gene symbol: TFEB
  hgvsc: ENST00000394283.1:c.165C>T
  hgvsp: ENST00000394283.1:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112561
  ensembl protein: ENSP00000230323
  ensembl transcript: ENST00000230323
  gene symbol: TFEB
  hgvsc: ENST00000230323.4:c.165C>T
  hgvsp: ENST00000230323.4:c.165C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11753
canonical: true
consequence: synonymous
filter: AC_Adj0
hgvs: p.Thr55Thr
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 472
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6687
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2651
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1084
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3608
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3892
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1072
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1328
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 9.75e1
variant carriers: 144

GenotypeQuality
all individuals: 2717
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28279
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1295
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 330
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3757
bin: 6.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.689303331306169e-5
allele num: 59196
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 1.113034875092753e-3
allele num: 8086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

East Asian
type: Population
allele count: 152
allele frequency: 1.881188118811881e-2
allele num: 8080
num of homozygotes: 2

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 5.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.7e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.126e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

DP
type: SiteQuality
SIO_000300: 1.139704e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31247
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4127
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6360
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1161
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1928
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2214
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.240436148586214e-5
allele num: 10822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5722
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.855e1

VQSLOD
type: SiteQuality
SIO_000300: -6.444e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

FS
type: SiteQuality
SIO_000300: 2.398e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.637e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.186654e6

GenotypeDepth
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3513
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6362
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31546
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2695
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 627
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5748
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.666444474070124e-5
allele num: 60008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8270
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.637e-1

FS
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.863e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.401e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.583e0

MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

DP
type: SiteQuality
SIO_000300: 1.190343e6

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2871
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5995
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35099
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4673
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.277184243298158e-5
allele num: 61028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.009e1

FS
type: SiteQuality
SIO_000300: 1.0e1

DP
type: SiteQuality
SIO_000300: 1.245437e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.194e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1369
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 982
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5888
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4859
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2213
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1029
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.05977108944468e-4
allele num: 9436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

QD
type: SiteQuality
SIO_000300: 8.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

FS
type: SiteQuality
SIO_000300: 6.923e0

VQSLOD
type: SiteQuality
SIO_000300: -3.712e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

DP
type: SiteQuality
SIO_000300: 1.277396e6

MQRankSum
type: SiteQuality
SIO_000300: -1.457e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39431
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588158688816186e-5
allele num: 62966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

DP
type: SiteQuality
SIO_000300: 1.337562e6

QD
type: SiteQuality
SIO_000300: 1.011e1

FS
type: SiteQuality
SIO_000300: 5.092e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.329e-1

GenotypeDepth
all individuals: 2
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1544
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5353
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39431
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588158688816186e-5
allele num: 62966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.092e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.011e1

MQRankSum
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.57e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.329e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.337562e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeDepth
all individuals: 0
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1496
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5550
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 500
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 417
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 8.582872401296967e-4
allele num: 10486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.259287243420224e-4
allele num: 63528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.323e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.16e0

QD
type: SiteQuality
SIO_000300: 1.276e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.365187e6

GenotypeQuality
all individuals: 646
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40031
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5550
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1496
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.536524890329964e-5
allele num: 10486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.16e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.323e0

DP
type: SiteQuality
SIO_000300: 1.365187e6

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeDepth
all individuals: 30644
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40532
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5629
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 428
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56907048264608e-5
allele num: 63732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.547e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.388e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 1.376472e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.79e-1

GenotypeDepth
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 799
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5629
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40532
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56907048264608e-5
allele num: 63732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.388e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

MQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 1.547e0

DP
type: SiteQuality
SIO_000300: 1.376472e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41192
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4802
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5684
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 814
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11138
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565043195192187e-5
allele num: 63896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.218e0

QD
type: SiteQuality
SIO_000300: 1.426e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.169e0

MQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

VQSLOD
type: SiteQuality
SIO_000300: 7.57e-1

DP
type: SiteQuality
SIO_000300: 1.38134e6

GenotypeDepth
all individuals: 33
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 541
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4480
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1593
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5780
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 357
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.090836969456565e-3
allele num: 10084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.818342151675486e-5
allele num: 11340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.851e0

VQSLOD
type: SiteQuality
SIO_000300: 2.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 5.85e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 1.390618e6

GenotypeDepth
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5840
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41812
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1597
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1689
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.555645437291932e-5
allele num: 64282
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.619e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

QD
type: SiteQuality
SIO_000300: 1.231e1

DP
type: SiteQuality
SIO_000300: 1.394947e6

VQSLOD
type: SiteQuality
SIO_000300: -2.69e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 6
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 707
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4018
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 281
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 41756
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 9.75e1
variant carriers: 322

GenotypeQuality
all individuals: 698
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.493765586034913e-3
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.212723658051689e-5
allele num: 64384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6158
num of homozygotes: 0

East Asian
type: Population
allele count: 324
allele frequency: 3.772706101537028e-2
allele num: 8588
num of homozygotes: 7

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12126
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.508e0

FS
type: SiteQuality
SIO_000300: 1.199e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.52e0

DP
type: SiteQuality
SIO_000300: 1.408452e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.07e-2

QD
type: SiteQuality
SIO_000300: 1.288e1

GenotypeDepth
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5862
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3962
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 284
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1588
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42098
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.134049129656744e-5
allele num: 12294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.085911079395613e-4
allele num: 64462
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.243781094527363e-3
allele num: 804
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2772e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.107e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

DP
type: SiteQuality
SIO_000300: 1.405327e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.607e0

GenotypeDepth
all individuals: 6
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42145
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5871
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3895
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550724188195888e-5
allele num: 64486
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.833e0

VQSLOD
type: SiteQuality
SIO_000300: 5.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.39e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.599e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-2

DP
type: SiteQuality
SIO_000300: 1.40617e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

GenotypeDepth
all individuals: 1714
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3534
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64708
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 1.284e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.699999999999999e-2

FS
type: SiteQuality
SIO_000300: 7.221e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.922e0

DP
type: SiteQuality
SIO_000300: 1.415204e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

GenotypeDepth
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1606
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42365
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1717
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.751969193068441e-5
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.555e0

DP
type: SiteQuality
SIO_000300: 1.416872e6

FS
type: SiteQuality
SIO_000300: 2.6277e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.777e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.721e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.78e-1

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3312
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5956
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1718
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.43915003219575e-4
allele num: 6212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543686322939179e-5
allele num: 64780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

QD
type: SiteQuality
SIO_000300: 1.255e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -5.725e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

MQ
type: SiteQuality
SIO_000300: 5.855e1

FS
type: SiteQuality
SIO_000300: 7.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 1.421056e6

GenotypeDepth
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43017
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1642
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.821253191907288e-5
allele num: 10182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64978
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.578e1

VQSLOD
type: SiteQuality
SIO_000300: -1.118e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

DP
type: SiteQuality
SIO_000300: 1.42817e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.59e-1

QD
type: SiteQuality
SIO_000300: 1.273e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

GenotypeDepth
all individuals: 1746
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6179
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1680
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 13
allele frequency: 1.273261508325171e-3
allele num: 10210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.709284096847239e-5
allele num: 11482
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528537800739812e-5
allele num: 65422
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 5.41e-1

DP
type: SiteQuality
SIO_000300: 1.452393e6

QD
type: SiteQuality
SIO_000300: 1.072e1

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44201
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526158354190831e-5
allele num: 65524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.4e-1

DP
type: SiteQuality
SIO_000300: 1.45441e6

QD
type: SiteQuality
SIO_000300: 1.475e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: -8.299e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6383
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45545
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-5
allele num: 65840
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2616e1

DP
type: SiteQuality
SIO_000300: 1.468531e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.947e0

MQRankSum
type: SiteQuality
SIO_000300: 9.12e-1

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.475e0

GenotypeDepth
all individuals: 19545
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45700
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.748488984207447e-5
allele num: 10258
num of homozygotes: 0

South Asian
type: Population
allele count: 20
allele frequency: 1.276650070215754e-3
allele num: 15666
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.2e1

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 1.093e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 1.473401e6

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6438
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736714136853074e-4
allele num: 11516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

VQSLOD
type: SiteQuality
SIO_000300: -1.462e-1

FS
type: SiteQuality
SIO_000300: 1.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.046e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.129e0

DP
type: SiteQuality
SIO_000300: 1.47424e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

GenotypeDepth
all individuals: 11
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45903
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6455
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 9.528649472748062e-4
allele num: 15742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65970
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

DP
type: SiteQuality
SIO_000300: 1.475273e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.258e0

QD
type: SiteQuality
SIO_000300: 1.003e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

GenotypeDepth
all individuals: 3
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6479
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 346
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.329915179136599e-5
allele num: 15798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.062e0

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.426e0

DP
type: SiteQuality
SIO_000300: 1.476631e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.542e1

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.349e0

FS
type: SiteQuality
SIO_000300: 8.606999999999999e0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1876
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1740
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6488
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.480609e6

QD
type: SiteQuality
SIO_000300: 5.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

FS
type: SiteQuality
SIO_000300: 6.481e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

MQ
type: SiteQuality
SIO_000300: 5.949e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.234e0

MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.003e0

GenotypeDepth
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1749
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.073312363900314e-5
allele num: 66128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.482541e6

QD
type: SiteQuality
SIO_000300: 1.738e1

VQSLOD
type: SiteQuality
SIO_000300: 3.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 7.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.979e0

GenotypeDepth
all individuals: 16
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46317
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 123
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6508
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.074410163339382e-5
allele num: 66120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.265e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 1.483229e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.123e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

GenotypeDepth
all individuals: 297
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46484
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.600104004160167e-4
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

QD
type: SiteQuality
SIO_000300: 1.109e1

FS
type: SiteQuality
SIO_000300: 4.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.13e0

DP
type: SiteQuality
SIO_000300: 1.486554e6

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeDepth
all individuals: 500
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1888
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6527
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020782986950218e-5
allele num: 66208
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.642e0

QD
type: SiteQuality
SIO_000300: 1.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.487164e6

VQSLOD
type: SiteQuality
SIO_000300: -3.931e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

GenotypeDepth
all individuals: 8
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1786
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45857
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1878
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510847887834653e-5
allele num: 66188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

FS
type: SiteQuality
SIO_000300: 3.842e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.5e-2

QD
type: SiteQuality
SIO_000300: 1.565e1

MQ
type: SiteQuality
SIO_000300: 5.803e1

VQSLOD
type: SiteQuality
SIO_000300: -1.542e0

DP
type: SiteQuality
SIO_000300: 1.486476e6

GenotypeDepth
all individuals: 1400
bin: 5.75e1
variant carriers: 1391

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 17

GenotypeQuality
all individuals: 837
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 835
bin: 7.25e1
variant carriers: 17

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 17

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 10

GenotypeQuality
all individuals: 23
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 4102
bin: 6.75e1
variant carriers: 27

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 26

GenotypeQuality
all individuals: 616
bin: 7.75e1
variant carriers: 44

GenotypeQuality
all individuals: 37709
bin: 6.25e1
variant carriers: 38

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 189
bin: 5.25e1
variant carriers: 31

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 157
bin: 3.25e1
variant carriers: 9

GenotypeQuality
all individuals: 83
bin: 9.25e1
variant carriers: 36

GenotypeQuality
all individuals: 15221
bin: 9.75e1
variant carriers: 15133

GenotypeQuality
all individuals: 227
bin: 8.25e1
variant carriers: 30

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 11

Other
type: Population
allele count: 129
allele frequency: 1.459276018099548e-1
allele num: 884
num of homozygotes: 13

South Asian
type: Population
allele count: 1966
allele frequency: 1.222180778316549e-1
allele num: 16086
num of homozygotes: 124

African
type: Population
allele count: 823
allele frequency: 7.971716388996512e-2
allele num: 10324
num of homozygotes: 34

Latino
type: Population
allele count: 978
allele frequency: 8.47927865441304e-2
allele num: 11534
num of homozygotes: 38

East Asian
type: Population
allele count: 1166
allele frequency: 1.351727335961048e-1
allele num: 8626
num of homozygotes: 77

European (Non-Finnish)
type: Population
allele count: 10241
allele frequency: 1.546231428916536e-1
allele num: 66232
num of homozygotes: 773

European (Finnish)
type: Population
allele count: 1326
allele frequency: 2.074468085106383e-1
allele num: 6392
num of homozygotes: 133

QD
type: SiteQuality
SIO_000300: 1.411e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.4e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

DP
type: SiteQuality
SIO_000300: 1.962148e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.032e0

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6484
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1169
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 2.445e0

DP
type: SiteQuality
SIO_000300: 1.504956e6

VQSLOD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.07e-1

QD
type: SiteQuality
SIO_000300: 1.318e1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1745
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1135
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6398
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47439
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.386511687316388e-5
allele num: 15658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514830187535977e-5
allele num: 66014
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

QD
type: SiteQuality
SIO_000300: 9.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

DP
type: SiteQuality
SIO_000300: 1.496636e6

VQSLOD
type: SiteQuality
SIO_000300: 5.49e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

GenotypeDepth
all individuals: 1
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.547930853850184e-5
allele num: 15272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.555947029522537e-5
allele num: 65848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.95e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 1.482958e6

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 2.824e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.038e0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 318
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 45920
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15044
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.044603440401888e-5
allele num: 65690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.319109461966605e-4
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.054e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.518e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

FS
type: SiteQuality
SIO_000300: 6.339e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 1.478365e6

QD
type: SiteQuality
SIO_000300: 7.74e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeDepth
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45920
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522301720200944e-5
allele num: 65690
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.74e0

VQSLOD
type: SiteQuality
SIO_000300: -5.054e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.518e0

FS
type: SiteQuality
SIO_000300: 6.339e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 1.478365e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.17e-1

GenotypeDepth
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522533495736906e-5
allele num: 65680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14992
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.145e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.476206e6

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

FS
type: SiteQuality
SIO_000300: 7.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45813
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 372
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.752291788570315e-5
allele num: 10254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65680
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.145e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.476206e6

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

FS
type: SiteQuality
SIO_000300: 7.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.23e-1

GenotypeDepth
all individuals: 4
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44957
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6112
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3387
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1365
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.607e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.18e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

QD
type: SiteQuality
SIO_000300: 1.745e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.19e-1

DP
type: SiteQuality
SIO_000300: 1.460333e6

GenotypeDepth
all individuals: 7
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5750
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44348
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1305
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 9.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.141940238921475e-5
allele num: 65126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.641497045305318e-4
allele num: 6092
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.838e1

MQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.83e-1

DP
type: SiteQuality
SIO_000300: 1.444112e6

VQSLOD
type: SiteQuality
SIO_000300: -1.186e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.286e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

GenotypeDepth
all individuals: 4636
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4976
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1288
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 963
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545786186854634e-5
allele num: 64692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

DP
type: SiteQuality
SIO_000300: 1.421676e6

VQSLOD
type: SiteQuality
SIO_000300: -1.605e0

FS
type: SiteQuality
SIO_000300: 2.555e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.132e0

MQ
type: SiteQuality
SIO_000300: 5.802e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.279e1

MQRankSum
type: SiteQuality
SIO_000300: -5.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

GenotypeDepth
all individuals: 2
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4598
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20197
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 204
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 796
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7771
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39785
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5063
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62486
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.821161901293025e-4
allele num: 10982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

DP
type: SiteQuality
SIO_000300: 1.342852e6

VQSLOD
type: SiteQuality
SIO_000300: -6.385999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.031e0

FS
type: SiteQuality
SIO_000300: 4.304e0

QD
type: SiteQuality
SIO_000300: 1.77e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4693
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632919660352711e-5
allele num: 61240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

QD
type: SiteQuality
SIO_000300: 9.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

DP
type: SiteQuality
SIO_000300: 1.302172e6

MQRankSum
type: SiteQuality
SIO_000300: 1.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 3461
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4086
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1968
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13991
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 673
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1690
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.402132002721706e-4
allele num: 8818
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.408e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

DP
type: SiteQuality
SIO_000300: 1.197228e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.359e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.74e-1

FS
type: SiteQuality
SIO_000300: 1.036e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

GenotypeDepth
all individuals: 3177
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2367
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.76385508166649e-5
allele num: 56694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4718
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.13989e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.22e-1

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2367
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.192463629859289e-4
allele num: 8386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56694
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 672
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7648
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

DP
type: SiteQuality
SIO_000300: 1.13989e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.22e-1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23932
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2350
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 499
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.336541031809677e-4
allele num: 7482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.09429e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.647e0

MQ
type: SiteQuality
SIO_000300: 5.908e1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e0

FS
type: SiteQuality
SIO_000300: 1.3743e1

QD
type: SiteQuality
SIO_000300: 1.446e1

VQSLOD
type: SiteQuality
SIO_000300: -6.7e-1

GenotypeDepth
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2757
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23527
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1756
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1311
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16104
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2237
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.963710627601917e-5
allele num: 50924
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6960
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.383e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.65e-1

QD
type: SiteQuality
SIO_000300: 1.088e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.74914e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

GenotypeDepth
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2968
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1145
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25461
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.043234849413592e-5
allele num: 48942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3826
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.625e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -2.894e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.155e0

DP
type: SiteQuality
SIO_000300: 9.37188e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

GenotypeDepth
all individuals: 6
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3797
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29953
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3644
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1263
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3985
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 9199
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43556
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.588559192413582e-4
allele num: 6538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6334
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.383e1

DP
type: SiteQuality
SIO_000300: 8.2289e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 4.778e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

GenotypeDepth
all individuals: 9
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1592
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30675
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1422
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4014
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9102
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 308
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3900
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.427347987439338e-4
allele num: 7006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42250
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.37e-1

FS
type: SiteQuality
SIO_000300: 5.119e0

QD
type: SiteQuality
SIO_000300: 1.322e1

DP
type: SiteQuality
SIO_000300: 8.12095e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.01e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.611e0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1567
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4303
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31775
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1762
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4051
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5958
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.467186420605941e-5
allele num: 40532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 492
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-2

FS
type: SiteQuality
SIO_000300: 1.385e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 2.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.77e-1

DP
type: SiteQuality
SIO_000300: 7.75803e5

QD
type: SiteQuality
SIO_000300: 2.39e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3472
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33845
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1678
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5418
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6012
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.843332385555871e-5
allele num: 35170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.93e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.408e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.57e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.15018e5

MQRankSum
type: SiteQuality
SIO_000300: -1.871e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.281e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

GenotypeDepth
all individuals: 17966
bin: 1.25e1
variant carriers: 1

GenotypeDepth
all individuals: 220
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3422
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6144
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34570
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1087
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.931993817619784e-4
allele num: 5176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.74333e5

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

FS
type: SiteQuality
SIO_000300: 3.279e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.131e1

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 17966
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34570
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3422
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5097
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2731
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1065
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6144
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.748863238894718e-4
allele num: 5718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5176
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.279e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.44e-2

DP
type: SiteQuality
SIO_000300: 6.74333e5

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

QD
type: SiteQuality
SIO_000300: 1.131e1

GenotypeDepth
all individuals: 9
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 214
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7661
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33737
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3217
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3362
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.912777352716144e-4
allele num: 5228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3746
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.69e0

QD
type: SiteQuality
SIO_000300: 1.174e1

VQSLOD
type: SiteQuality
SIO_000300: -1.55e0

DP
type: SiteQuality
SIO_000300: 6.31033e5

MQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

FS
type: SiteQuality
SIO_000300: 4.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.02e-2

MQ
type: SiteQuality
SIO_000300: 5.79e1

GenotypeDepth
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 596
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30599
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3011
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3362
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 746
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2578
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11169
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1732
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 6.747638326585695e-4
allele num: 1482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2886
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.910273545397844e-5
allele num: 22446
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

DP
type: SiteQuality
SIO_000300: 5.81127e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

FS
type: SiteQuality
SIO_000300: 3.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

QD
type: SiteQuality
SIO_000300: 1.252e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

GenotypeDepth
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1341
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4052
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12405
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 199
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 565
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.909304143862392e-4
allele num: 2558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.763046544428773e-4
allele num: 5672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.874592673052236e-5
allele num: 20254
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.119e1

VQSLOD
type: SiteQuality
SIO_000300: -2.145e0

DP
type: SiteQuality
SIO_000300: 5.6794e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.72e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.7576e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.48e-1

GenotypeDepth
all individuals: 29292
bin: 7.5e0
variant carriers: 1

GenotypeDepth
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1221
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12653
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4035
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27954
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3367
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 195
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2304
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19976
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.72e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.65e-1

QD
type: SiteQuality
SIO_000300: 1.395e1

FS
type: SiteQuality
SIO_000300: 6.368e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 5.67361e5

GenotypeDepth
all individuals: 9
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3696
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3914
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5003
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25986
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1586
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 5.60871e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.88e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.719e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.616e1

QD
type: SiteQuality
SIO_000300: 1.644e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 663
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14264
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4987
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25816
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3816
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1560
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 5.62099e5

QD
type: SiteQuality
SIO_000300: 1.25e1

GenotypeDepth
all individuals: 10
bin: 6.25e1
variant carriers: 1

GenotypeDepth
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 8.25e1
variant carriers: 2

GenotypeDepth
all individuals: 4
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 26286
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1955
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 3.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3583
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 444
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 918
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3215
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1257
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 285
bin: 9.75e1
variant carriers: 93

GenotypeQuality
all individuals: 73
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 14311
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 158
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 168
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 5242
bin: 6.25e1
variant carriers: 6

Latino
type: Population
allele count: 3
allele frequency: 1.896333754740834e-3
allele num: 1582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.218524681087077e-4
allele num: 18030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1000
num of homozygotes: 0

African
type: Population
allele count: 75
allele frequency: 1.861042183622829e-2
allele num: 4030
num of homozygotes: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.37438152831226e-4
allele num: 7276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2160
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

FS
type: SiteQuality
SIO_000300: 5.083e0

DP
type: SiteQuality
SIO_000300: 5.65417e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 1.685e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

GenotypeDepth
all individuals: 3
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 665
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3105
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3603
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 932
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14457
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5385
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 996
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.547542438699656e-5
allele num: 18026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

QD
type: SiteQuality
SIO_000300: 1.392e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 5.64416e5