7-45115676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115676
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115676
    reference: chr 7
allele count: 2
allele frequency: 1.773772992532416e-5
allele num: 112754
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*20C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1690C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1708C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4928C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*20C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*481C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*20C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11443
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

7-45115678-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115678
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115678
    reference: chr 7
allele count: 1
allele frequency: 9.022013713460844e-6
allele num: 110840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1692C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*22C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*22C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*22C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*22C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*22C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4930C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*22C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*483C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1710C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1065
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

7-45115679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115679
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115679
    reference: chr 7
allele count: 1
allele frequency: 9.02233931213685e-6
allele num: 110836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*484C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*23C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*23C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*23C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4931C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1711C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1693C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3993
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

7-45115680-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115680
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115680
    reference: chr 7
allele count: 1
allele frequency: 9.023316249187902e-6
allele num: 110824
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1712C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*485C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*24C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*24C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*24C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*24C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1694C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*24C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4932C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*24C>G
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9103
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26278
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

7-45115683-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115683
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115683
    reference: chr 7
allele count: 1
allele frequency: 9.186954524575103e-6
allele num: 108850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1715A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*27A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*27A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*488A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*27A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1697A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4935A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*27A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*27A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*27A>G
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25195
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5891
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-45115684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115684
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115684
    reference: chr 7
allele count: 1
allele frequency: 9.228156952493447e-6
allele num: 108364
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*28C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1716C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*489C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4936C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*28C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*28C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1698C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24911
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5857
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

7-45115688-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115688
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115688
    reference: chr 7
allele count: 1
allele frequency: 9.492529379378429e-6
allele num: 105346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*32C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1702C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1720C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4940C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*493C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*32C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*32C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9530
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

7-45115689-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115689
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115689
    reference: chr 7
allele count: 8
allele frequency: 7.658873762613208e-5
allele num: 104454
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*33C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4941C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*33C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1703C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*494C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*33C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1721C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22795
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8395
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5280
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

7-45115690-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115690
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115690
    reference: chr 7
allele count: 1
allele frequency: 9.646550393579256e-6
allele num: 103664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4942G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1704G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*34G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*34G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*34G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*495G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1722G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22483
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8840
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11847
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS

7-45115691-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115691
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115691
    reference: chr 7
allele count: 9
allele frequency: 8.756908227601775e-5
allele num: 102776
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*496C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1723C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1705C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*35C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4943C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*35C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*35C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21907
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5105
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

7-45115692-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115692
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115692
    reference: chr 7
allele count: 4
allele frequency: 3.928809963462067e-5
allele num: 101812
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*36G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1724G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*497G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1706G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*36G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4944G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*36G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8332
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8019
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30991
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

7-45115697-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115697
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115697
    reference: chr 7
allele count: 3
allele frequency: 3.136107045787163e-5
allele num: 95660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*41C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1729C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*502C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*41C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4949C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*41C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*41C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*41C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1711C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*41C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10289
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2260
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

7-45115699-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115699
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115699
    reference: chr 7
allele count: 2
allele frequency: 2.165814779520056e-5
allele num: 92344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1713T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1731T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*43T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*504T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*43T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*43T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*43T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4951T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*43T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*43T>C
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16023
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8081
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1902
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD

7-45115700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115700
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115700
    reference: chr 7
allele count: 1
allele frequency: 1.084222395697805e-5
allele num: 92232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4952C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*44C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*44C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1732C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*505C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*44C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1714C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11715
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16033
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-45115716-A-AGGAGCTGCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115716
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115726
    reference: chr 7
allele count: 2
allele frequency: 2.556956199340305e-5
allele num: 78218
alternate allele: AGGAGCTGCCC
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17910
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

7-45115723-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115723
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115723
    reference: chr 7
allele count: 1
allele frequency: 1.438476365833309e-5
allele num: 69518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*67G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4975G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1755G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*67G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*67G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*528G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*67G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*67G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*67G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1737G>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3065
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

7-45115734-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115734
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115734
    reference: chr 7
allele count: 2
allele frequency: 3.299567756623883e-5
allele num: 60614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1766C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*78C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*78C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*78C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*78C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*78C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*539C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4986C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1748C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*78C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7058
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

7-45115735-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115735
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115735
    reference: chr 7
allele count: 2
allele frequency: 3.310710147326601e-5
allele num: 60410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1749G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4987G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*79G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*79G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*79G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*79G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1767G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*79G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*540G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*79G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum

7-45115735-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115735
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115735
    reference: chr 7
allele count: 1
allele frequency: 1.655355073663301e-5
allele num: 60410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1767G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*79G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*79G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1749G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*79G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*79G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4987G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*79G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*79G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*540G>C
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18804
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22193
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7096
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

7-45115742-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115742
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115742
    reference: chr 7
allele count: 1
allele frequency: 1.815804764671702e-5
allele num: 55072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4994C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*86C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1756C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*547C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*86C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*86C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*86C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*86C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1774C>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*86C>G
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17861
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9648
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2836
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

7-45115747-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115747
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115747
    reference: chr 7
allele count: 2
allele frequency: 3.87086784857165e-5
allele num: 51668
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1779G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1761G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*552G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*91G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*91G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.4999G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*91G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*91G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*91G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*91G>C
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17049
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

7-45115748-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115748
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115748
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 50330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*92G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*553G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1780G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*92G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*92G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*92G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*92G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5000G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*92G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1762G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16623
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22277
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11490
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3264
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

7-45115755-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115755
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115755
    reference: chr 7
allele count: 5
allele frequency: 1.101273071670852e-4
allele num: 45402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1769C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*99C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*99C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1787C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*99C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5007C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*99C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*560C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*99C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*99C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21672
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15033
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

7-45115765-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115765
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115765
    reference: chr 7
allele count: 1
allele frequency: 2.94967848504513e-5
allele num: 33902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*109G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*109G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*109G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*109G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*109G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1797G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*109G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*570G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5017G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1779G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22786
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16995
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

7-45115766-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115766
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115766
    reference: chr 7
allele count: 3
allele frequency: 8.910008910008909e-5
allele num: 33670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1798C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*110C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*571C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*110C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*110C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1780C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5018C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*110C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*110C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*110C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9762
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17049
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2741
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ

7-45115767-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115767
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115767
    reference: chr 7
allele count: 88
allele frequency: 2.71957475740157e-3
allele num: 32358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*111G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5019G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*111G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*572G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1781G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*111G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*111G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*111G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*111G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1799G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17271
  bin: 2.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22894
  bin: 7.5e0
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 1.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16205
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 3
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

7-45115767-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115767
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115767
    reference: chr 7
allele count: 10
allele frequency: 3.090425860683602e-4
allele num: 32358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1799G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*111G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*111G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*111G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*111G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*111G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*111G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1781G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*572G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5019G>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22894
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9273
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16205
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

7-45115770-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115770
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115770
    reference: chr 7
allele count: 2
allele frequency: 6.399590426212723e-5
allele num: 31252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1784C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1802C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*114C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*575C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*114C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*114C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*114C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*114C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5022C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*114C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22667
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8838
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17636
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19014
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15297
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

7-45115771-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115771
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115771
    reference: chr 7
allele count: 1
allele frequency: 3.316089667064597e-5
allele num: 30156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*115G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*115G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*115G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*115G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*115G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1803G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*115G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5023G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*576G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1785G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17982
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22367
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19317
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

7-45115773-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115773
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115773
    reference: chr 7
allele count: 11237
allele frequency: 3.762472376615549e-1
allele num: 29866
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*117T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1805T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*117T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*117T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*117T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*578T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*117T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*117T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5025T>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1787T>C
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 304
genotype depth: GenotypeDepth
  all individuals: 8298
  bin: 1.25e1
  variant carriers: 5239
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 382
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 5.25e1
  variant carriers: 302
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 8.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 3.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 3.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 22306
  bin: 7.5e0
  variant carriers: 11204
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 16689
  bin: 2.5e0
  variant carriers: 2105
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 1.75e1
  variant carriers: 853
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.75e1
  variant carriers: 336
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 9.75e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 4.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.75e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.25e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 9294
  bin: 2.25e1
  variant carriers: 1754
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 3.25e1
  variant carriers: 699
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 5.75e1
  variant carriers: 858
num of homozygotes: 1903
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

7-45115777-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115777
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115777
    reference: chr 7
allele count: 1
allele frequency: 4.653327128897162e-5
allele num: 21490
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*121G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1809G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*121G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*582G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*121G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5029G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*121G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*121G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*121G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1791G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11672
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

7-45115780-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115780
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115780
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 16938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*585G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*124G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*124G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*124G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*124G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1812G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*124G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*124G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5032G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1794G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31453
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

7-45115782-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115782
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115782
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 16878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*126C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*587C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*126C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5034C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1796C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*126C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*126C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*126C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*126C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1814C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31738
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-45115785-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115785
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115785
    reference: chr 7
allele count: 42
allele frequency: 2.489626556016597e-3
allele num: 16870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*129C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*129C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1817C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*129C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*129C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1799C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*590C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5037C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*129C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*129C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32155
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10930
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32406
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

7-45115786-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115786
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115786
    reference: chr 7
allele count: 16
allele frequency: 1.056384523966724e-3
allele num: 15146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*130G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*130G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1818G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*591G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*130G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*130G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5038G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*130G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1800G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*130G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9729
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32864
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5876
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

7-45115789-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115789
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115789
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 14484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1803C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*133C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*133C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*133C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5041C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1821C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*133C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*133C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*594C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*133C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 33769
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

7-45115790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115790
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115790
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 14468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1804G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5042G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1822G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*134G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*134G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*134G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*134G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*134G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*134G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*595G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 33964
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

7-45115790-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115790
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115790
    reference: chr 7
allele count: 1
allele frequency: 6.911805363560962e-5
allele num: 14468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*134G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*134G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*134G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*134G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*134G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1822G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*595G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5042G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1804G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*134G>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8506
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

7-45115796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115796
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115796
    reference: chr 7
allele count: 1
allele frequency: 7.342143906020558e-5
allele num: 13620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*140G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*140G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*601G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*140G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*140G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1810G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*140G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5048G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1828G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*140G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34395
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

7-45115804-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115804
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115804
    reference: chr 7
allele count: 1
allele frequency: 7.638252367858234e-5
allele num: 13092
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*148A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*148A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*148A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*148A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1818A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1836A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5056A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*148A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*609A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*148A>G
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33390
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2471
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-45115805-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115805
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115805
    reference: chr 7
allele count: 61
allele frequency: 4.650099100472633e-3
allele num: 13118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5057C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*149C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*149C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1837C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*149C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1819C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*149C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*149C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*610C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*149C>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 7.5e0
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33411
  bin: 2.5e0
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 4
num of homozygotes: 2
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

7-45115822-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115822
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115822
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 12508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*627G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*166G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*166G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*166G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1836G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*166G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1854G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*166G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*166G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5074G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-45115823-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115823
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115823
    reference: chr 7
allele count: 1
allele frequency: 8.002560819462228e-5
allele num: 12496
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*167C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*167C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5075C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*167C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*628C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*167C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1855C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*167C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1837C>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*167C>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

7-45115825-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115825
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115825
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 12482
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*169G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*169G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*169G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5077G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*169G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1857G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*630G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*169G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1839G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*169G>C
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27028
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4212
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

7-45115827-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115827
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115827
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 12400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1859C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*171C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*632C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*171C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5079C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*171C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*171C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*171C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1841C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*171C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24655
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20871
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4156
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD

7-45115828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115828
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115828
    reference: chr 7
allele count: 1
allele frequency: 8.061915511125443e-5
allele num: 12404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*172G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*172G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*172G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5080G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*172G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1842G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*633G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*172G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*172G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1860G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3490
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21713
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ

7-45115832-GAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115832
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115830
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 12402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5087_5088delAC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*179_*180delAC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*179_*180delAC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*179_*180delAC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*179_*180delAC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*179_*180delAC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1849_1850delAC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*640_*641delAC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*179_*180delAC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1867_1868delAC
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4211
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: GAC
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-45115847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115847
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115847
    reference: chr 7
allele count: 97
allele frequency: 7.858068697342839e-3
allele num: 12344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*652G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*191G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1861G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*191G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*191G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*191G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1879G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5099G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*191G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*191G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18551
  bin: 2.5e0
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 2
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

7-45115849-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115849
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115849
    reference: chr 7
allele count: 6
allele frequency: 4.87012987012987e-4
allele num: 12320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*654G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*193G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*193G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*193G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1863G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*193G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*193G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5101G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1881G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*193G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17514
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

7-45115852-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115852
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115852
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 12312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5104G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1866G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*196G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*196G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*196G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1884G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*196G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*657G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*196G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*196G>C
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17008
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3173
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

7-45115859-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115859
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115859
    reference: chr 7
allele count: 1
allele frequency: 8.134049129656744e-5
allele num: 12294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5111G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*203G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*664G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*203G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1873G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*203G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*203G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*203G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*203G>C
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1891G>C
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4237
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS

7-45115871-GTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115871
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115869
    reference: chr 7
allele count: 1
allele frequency: 8.164598301763554e-5
allele num: 12248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*216_*217delTC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*677_*678delTC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1886_1887delTC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*216_*217delTC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1904_1905delTC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*216_*217delTC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5124_5125delTC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*216_*217delTC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*216_*217delTC
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*216_*217delTC
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11330
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: GTC
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-45115913-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115913
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115913
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 11654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*257G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1927G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*257G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1945G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*257G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*718G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*257G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*257G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5165G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*257G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff

7-45115913-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115913
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115913
    reference: chr 7
allele count: 1
allele frequency: 8.580744808649391e-5
allele num: 11654
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*257G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*718G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*257G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*257G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1945G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1927G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*257G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*257G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*257G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5165G>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

7-45115928-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115928
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115928
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 10562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*272G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5180G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*272G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1960G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*272G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*733G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*272G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1942G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*272G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*272G>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

7-45115934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115934
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115934
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 10228
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*739G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*278G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1966G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1948G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*278G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*278G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*278G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*278G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*278G>A
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5186G>A
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4116
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

7-45115940-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115940
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115940
    reference: chr 7
allele count: 1
allele frequency: 1.005227181342983e-4
allele num: 9948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*284A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*745A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*284A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1972A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5192A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*284A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*284A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1954A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*284A>G
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*284A>G
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3814
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS

7-45115950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115950
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115950
    reference: chr 7
allele count: 1
allele frequency: 1.126887536623845e-4
allele num: 8874
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*294C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1964C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*294C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*294C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*755C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5202C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*294C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*294C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*294C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000461377
  gene symbol: CCM2
  hgvsc: ENST00000461377.1:n.1982C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-45115952-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115952
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115952
    reference: chr 7
allele count: 1
allele frequency: 1.144426642252232e-4
allele num: 8738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*296G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5204G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*757G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*296G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*296G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1966G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*296G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*296G>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*296G>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-45115954-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115954
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115954
    reference: chr 7
allele count: 2
allele frequency: 2.370229912301493e-4
allele num: 8438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*298C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*298C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1968C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*759C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5206C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*298C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*298C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*298C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*298C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-45115970-C-CGGCT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45115970
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45115974
    reference: chr 7
allele count: 1
allele frequency: 1.535626535626536e-4
allele num: 6512
alternate allele: CGGCT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*316_*319dupGCTG
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417251
  ensembl transcript: ENST00000488727
  gene symbol: CCM2
  hgvsc: ENST00000488727.1:c.*777_*780dupGCTG
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*316_*319dupGCTG
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*316_*319dupGCTG
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*316_*319dupGCTG
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*316_*319dupGCTG
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.1986_1989dupGCTG
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5224_5227dupGCTG
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*316_*319dupGCTG
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3283
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3705
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

7-45116017-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45116017
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45116017
    reference: chr 7
allele count: 12
allele frequency: 5.439709882139619e-3
allele num: 2206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000417180
  ensembl transcript: ENST00000475551
  gene symbol: CCM2
  hgvsc: ENST00000475551.1:c.*361C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000258781
  ensembl transcript: ENST00000258781
  gene symbol: CCM2
  hgvsc: ENST00000258781.6:c.*361C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000481194
  gene symbol: CCM2
  hgvsc: ENST00000481194.1:n.5269C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000370503
  ensembl transcript: ENST00000381112
  gene symbol: CCM2
  hgvsc: ENST00000381112.3:c.*361C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000136280
  ensembl transcript: ENST00000477605
  gene symbol: CCM2
  hgvsc: ENST00000477605.1:n.2031C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000419474
  ensembl transcript: ENST00000474617
  gene symbol: CCM2
  hgvsc: ENST00000474617.1:c.*361C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000438035
  ensembl transcript: ENST00000544363
  gene symbol: CCM2
  hgvsc: ENST00000544363.1:c.*361C>T
  variant of: http://identifiers.org/hgnc/21708
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136280
  ensembl protein: ENSP00000444725
  ensembl transcript: ENST00000541586
  gene symbol: CCM2
  hgvsc: ENST00000541586.1:c.*361C>T
  variant of: http://identifiers.org/hgnc/21708
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1552
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5808
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

7-45116099-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45116099
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45116099
    reference: chr 7
allele count: 1
allele frequency: 6.337135614702154e-4
allele num: 1578
alternate allele: T
canonical: true
consequence: downstream gene
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
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genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5064
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 368
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 14
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 72
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 8.620689655172414e-3
  allele num: 116
  num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

7-45120058-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45120058
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45120058
    reference: chr 7
allele count: 29
allele frequency: 1.454217229966904e-3
allele num: 19942
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136274
  ensembl protein: ENSP00000420477
  ensembl transcript: ENST00000490531
  gene symbol: NACAD
  hgvsc: ENST00000490531.2:c.*50C>T
  variant of: http://identifiers.org/hgnc/22196
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4949
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 475
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
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  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 96
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 9204
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 101
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 78
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
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genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 3300
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genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 76
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 56
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 20
  allele frequency: 2.527167045741724e-3
  allele num: 7914
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 410
  num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

7-45120066-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45120066
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45120066
    reference: chr 7
allele count: 1
allele frequency: 5.023610971566362e-5
allele num: 19906
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136274
  ensembl protein: ENSP00000420477
  ensembl transcript: ENST00000490531
  gene symbol: NACAD
  hgvsc: ENST00000490531.2:c.*42C>T
  variant of: http://identifiers.org/hgnc/22196
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9201
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 50
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2174
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 622
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

7-45120068-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45120068
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45120068
    reference: chr 7
allele count: 77
allele frequency: 3.867403314917127e-3
allele num: 19910
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136274
  ensembl protein: ENSP00000420477
  ensembl transcript: ENST00000490531
  gene symbol: NACAD
  hgvsc: ENST00000490531.2:c.*40A>T
  variant of: http://identifiers.org/hgnc/22196
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 261
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 481
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4947
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 2.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 559
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genotype depth: GenotypeDepth
  all individuals: 420
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  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9211
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  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 99
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genotype quality: GenotypeQuality
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 1
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7914
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 52
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 192
  num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

7-45120074-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45120074
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45120074
    reference: chr 7
allele count: 1
allele frequency: 5.026641198351262e-5
allele num: 19894
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136274
  ensembl protein: ENSP00000420477
  ensembl transcript: ENST00000490531
  gene symbol: NACAD
  hgvsc: ENST00000490531.2:c.*34T>C
  variant of: http://identifiers.org/hgnc/22196
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
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genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 263
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2924
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 192
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 412
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 622
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

7-45120079-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45120079
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45120079
    reference: chr 7
allele count: 1
allele frequency: 5.03068719187041e-5
allele num: 19878
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136274
  ensembl protein: ENSP00000420477
  ensembl transcript: ENST00000490531
  gene symbol: NACAD
  hgvsc: ENST00000490531.2:c.*29C>T
  variant of: http://identifiers.org/hgnc/22196
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9194
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 1
  allele frequency: 1.263583522870862e-4
  allele num: 7914
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2166
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 192
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

7-45120087-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45120087
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45120087
    reference: chr 7
allele count: 1
allele frequency: 5.03119339907426e-5
allele num: 19876
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136274
  ensembl protein: ENSP00000420477
  ensembl transcript: ENST00000490531
  gene symbol: NACAD
  hgvsc: ENST00000490531.2:c.*21C>T
  variant of: http://identifiers.org/hgnc/22196
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9193
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 7914
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 1.172882946281961e-4
  allele num: 8526
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 410
  num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

7-45120098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 45120098
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 45120098
    reference: chr 7
allele count: 1
allele frequency: 5.035753852351697e-5
allele num: 19858
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000136274
  ensembl protein: ENSP00000420477
  ensembl transcript: ENST00000490531
  gene symbol: NACAD
  hgvsc: ENST00000490531.2:c.*10G>A
  variant of: http://identifiers.org/hgnc/22196
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4944
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9194
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 40467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5015
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6712
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16096
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.243593902043464e-5
allele num: 61660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.08e-1

DP
type: SiteQuality
SIO_000300: 1.643791e6

QD
type: SiteQuality
SIO_000300: 9.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.476e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38728
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6185
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6315
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 92
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.647337901950448e-5
allele num: 60704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10954
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 4.914e0

VQSLOD
type: SiteQuality
SIO_000300: -6.788e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.35e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.44e-1

DP
type: SiteQuality
SIO_000300: 1.613796e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

QD
type: SiteQuality
SIO_000300: 5.81e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6142
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
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variant carriers: 0

GenotypeQuality
all individuals: 253
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variant carriers: 0

GenotypeQuality
all individuals: 6381
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38998
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 602
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.647012319652151e-5
allele num: 60716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5298
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e-1

FS
type: SiteQuality
SIO_000300: 3.322e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

VQSLOD
type: SiteQuality
SIO_000300: 4.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.083e0

DP
type: SiteQuality
SIO_000300: 1.613228e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10958
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5312
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60686
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.275510204081633e-3
allele num: 784
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5088
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10770
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.67470525187567e-5
allele num: 59712
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.71e0

MQRankSum
type: SiteQuality
SIO_000300: 7.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

FS
type: SiteQuality
SIO_000300: 3.677e0

DP
type: SiteQuality
SIO_000300: 1.579366e6

VQSLOD
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SIO_000300: -2.035e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.681802892700975e-5
allele num: 59460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8128
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

QD
type: SiteQuality
SIO_000300: 2.037e1

DP
type: SiteQuality
SIO_000300: 1.569383e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.041e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.726996407847472e-5
allele num: 57904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.465e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.19e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.509618e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.45e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.395e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7830
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.223386844029669e-5
allele num: 57434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 3.294675803900896e-4
allele num: 15176
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4760
num of homozygotes: 0

VQSLOD
type: SiteQuality
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QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

ClippingRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 2.645e0

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.25e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.754447524474543e-5
allele num: 56998
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.863e1

MQRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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DP
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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num of homozygotes: 0

Latino
type: Population
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East Asian
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African
type: Population
allele count: 2
allele frequency: 2.460629921259842e-4
allele num: 8128
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 6
allele frequency: 1.061083012060977e-4
allele num: 56546
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 6.668444918644971e-5
allele num: 14996
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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FS
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.137758743754462e-5
allele num: 56040
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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FS
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MQ
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VQSLOD
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DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e-1

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4130
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 9100
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 5.688497857332473e-5
allele num: 52738
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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InbreedingCoeff
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QD
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FS
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MQ
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQRankSum
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SIO_000300: -2.45e-1

ClippingRankSum
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 6874
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14068
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3940
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.930972129407603e-5
allele num: 50878
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
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SIO_000300: -1.284e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

DP
type: SiteQuality
SIO_000300: 1.248088e6

FS
type: SiteQuality
SIO_000300: 7.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.16e0

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.166588894073728e-4
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14056
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7332
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6852
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 50844
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -3.299e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

DP
type: SiteQuality
SIO_000300: 1.246182e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

QD
type: SiteQuality
SIO_000300: 1.002e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
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allele frequency: 0.0e0
allele num: 12896
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5674
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
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European (Non-Finnish)
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allele count: 2
allele frequency: 4.661570016781652e-5
allele num: 42904
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.237e1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
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SIO_000300: 1.006502e6

MQRankSum
type: SiteQuality
SIO_000300: -2.927e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 2.62977962446747e-5
allele num: 38026
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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QD
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FS
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MQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Other
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.035085589413621e-5
allele num: 32948
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VQSLOD
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FS
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Non-Finnish)
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allele num: 32846
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Latino
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European (Finnish)
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Other
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InbreedingCoeff
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MQ
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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QD
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FS
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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Other
type: Population
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele count: 1
allele frequency: 3.044510747122937e-5
allele num: 32846
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.79e-1

FS
type: SiteQuality
SIO_000300: 1.697e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

QD
type: SiteQuality
SIO_000300: 1.18e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.09697e5

GenotypeQuality
all individuals: 32126
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 2.378686964795433e-4
allele num: 4204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1910
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11074
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.111e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 4.26e0

VQSLOD
type: SiteQuality
SIO_000300: 7.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.681e0

DP
type: SiteQuality
SIO_000300: 7.65122e5

GenotypeQuality
all individuals: 100
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 74
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 5.299417064122947e-4
allele num: 3774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3230
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.11e-2

FS
type: SiteQuality
SIO_000300: 2.949e0

DP
type: SiteQuality
SIO_000300: 7.36819e5

QD
type: SiteQuality
SIO_000300: 1.007e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

GenotypeQuality
all individuals: 74
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
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GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27148
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3626
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.004e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.67e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
SIO_000300: 7.27695e5

QD
type: SiteQuality
SIO_000300: 6.9e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

GenotypeQuality
all individuals: 170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
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variant carriers: 1

GenotypeQuality
all individuals: 2742
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variant carriers: 3

GenotypeQuality
all individuals: 2855
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variant carriers: 0

GenotypeQuality
all individuals: 2122
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variant carriers: 0

GenotypeQuality
all individuals: 100
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 9
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variant carriers: 1

GenotypeQuality
all individuals: 169
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variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 1

GenotypeQuality
all individuals: 2486
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variant carriers: 1

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 1.875468867216804e-3
allele num: 2666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24310
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.062e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.24e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.51e-1

DP
type: SiteQuality
SIO_000300: 6.92142e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 645
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18506
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17349
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1737
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GenotypeQuality
all individuals: 549
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GenotypeQuality
all individuals: 2079
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GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 100
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GenotypeQuality
all individuals: 5202
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 956
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.045150501672241e-4
allele num: 9568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1704
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 6.255e5

FS
type: SiteQuality
SIO_000300: 2.1137e1

QD
type: SiteQuality
SIO_000300: 1.34e1

VQSLOD
type: SiteQuality
SIO_000300: -2.575e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.824111822947e-5
allele num: 17170
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.385964912280702e-4
allele num: 2280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1792
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.046243984097091e-4
allele num: 9558
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.82e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.994e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

DP
type: SiteQuality
SIO_000300: 6.24656e5

FS
type: SiteQuality
SIO_000300: 7.495e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 80
bin: 9.25e1
variant carriers: 6

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2404
bin: 6.25e1
variant carriers: 12

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
all individuals: 60
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 9.75e1
variant carriers: 96

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.442897276169537e-4
allele num: 16374
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.0e-3
allele num: 250
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.805054151624549e-3
allele num: 1662
num of homozygotes: 0

African
type: Population
allele count: 80
allele frequency: 3.639672429481346e-2
allele num: 2198
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 6.18903e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

FS
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 13

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 547
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GenotypeQuality
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GenotypeQuality
all individuals: 16
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GenotypeQuality
all individuals: 144
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 4273
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.832172957127153e-4
allele num: 16374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 4.424778761061947e-3
allele num: 1582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.18903e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.54e0

FS
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.25e-2

QD
type: SiteQuality
SIO_000300: 1.304e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

GenotypeQuality
all individuals: 101
bin: 8.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.348400203148806e-5
allele num: 15752
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 6.361323155216285e-4
allele num: 1572
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.246e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 2.027e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1964
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.080146899978397e-4
allele num: 9258
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15126
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

FS
type: SiteQuality
SIO_000300: 9.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.97e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 6.04692e5

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 13930
bin: 7.5e0
variant carriers: 817

GenotypeQuality
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variant carriers: 611

GenotypeQuality
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variant carriers: 50

GenotypeQuality
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variant carriers: 406

GenotypeQuality
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variant carriers: 353

GenotypeQuality
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variant carriers: 415

GenotypeQuality
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variant carriers: 798

GenotypeQuality
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variant carriers: 1040

GenotypeQuality
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variant carriers: 955

GenotypeQuality
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variant carriers: 598

GenotypeQuality
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variant carriers: 606

GenotypeQuality
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GenotypeQuality
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variant carriers: 934

GenotypeQuality
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variant carriers: 1738

GenotypeQuality
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variant carriers: 225

GenotypeQuality
all individuals: 8862
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variant carriers: 8753

GenotypeQuality
all individuals: 1312
bin: 2.75e1
variant carriers: 967

East Asian
type: Population
allele count: 200
allele frequency: 1.497005988023952e-1
allele num: 1336
num of homozygotes: 16

Latino
type: Population
allele count: 656
allele frequency: 4.613220815752461e-1
allele num: 1422
num of homozygotes: 123

Other
type: Population
allele count: 82
allele frequency: 3.416666666666667e-1
allele num: 240
num of homozygotes: 13

European (Non-Finnish)
type: Population
allele count: 6463
allele frequency: 4.35160247778077e-1
allele num: 14852
num of homozygotes: 1173

European (Finnish)
type: Population
allele count: 275
allele frequency: 3.716216216216216e-1
allele num: 740
num of homozygotes: 42

African
type: Population
allele count: 697
allele frequency: 3.585390946502058e-1
allele num: 1944
num of homozygotes: 107

South Asian
type: Population
allele count: 2864
allele frequency: 3.069009858551222e-1
allele num: 9332
num of homozygotes: 429

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 6.24235e5

QD
type: SiteQuality
SIO_000300: 1.885e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

FS
type: SiteQuality
SIO_000300: 5.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.72e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 293
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1326
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 43
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GenotypeQuality
all individuals: 257
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.067235859124867e-4
allele num: 9370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.35e-2

DP
type: SiteQuality
SIO_000300: 4.08353e5

ClippingRankSum
type: SiteQuality
SIO_000300: 9.55e-1

QD
type: SiteQuality
SIO_000300: 1.64e1

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.002e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 293
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 928
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.8e-1

DP
type: SiteQuality
SIO_000300: 3.70176e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.149999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 9.76e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 289
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.68331e5

MQ
type: SiteQuality
SIO_000300: 5.863e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.22e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.915e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.136e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 930
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

South Asian
type: Population
allele count: 41
allele frequency: 5.038092897517818e-3
allele num: 8138
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568873548791967e-4
allele num: 6374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
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MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.3e-2

QD
type: SiteQuality
SIO_000300: 1.362e1

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.290000000000001e-2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 263
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variant carriers: 3

GenotypeQuality
all individuals: 1833
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 105
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5304
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.763171098845961e-4
allele num: 7972
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.33495145631068e-2
allele num: 824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.807692307692308e-3
allele num: 416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.530000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.46179e5

FS
type: SiteQuality
SIO_000300: 5.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.804e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.8e-2

BaseQRankSum
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SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.628e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 3.35235e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.91e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

FS
type: SiteQuality
SIO_000300: 2.231e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.027e1

DP
type: SiteQuality
SIO_000300: 3.34465e5

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.326259946949602e-3
allele num: 754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.34465e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.91e-2

FS
type: SiteQuality
SIO_000300: 2.231e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.26e-1

QD
type: SiteQuality
SIO_000300: 1.027e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.28e-1

GenotypeQuality
all individuals: 4195
bin: 6.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.703703703703704e-3
allele num: 270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.16317e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.08e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.087e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 1
allele frequency: 1.54320987654321e-3
allele num: 648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.95726e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.53e-2

MQRankSum
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QD
type: SiteQuality
SIO_000300: 1.799e1

VQSLOD
type: SiteQuality
SIO_000300: -1.599e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 23

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 44
allele frequency: 1.07843137254902e-2
allele num: 4080
num of homozygotes: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 8.064516129032258e-3
allele num: 248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.166666666666666e-2
allele num: 24
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.08641975308642e-3
allele num: 648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

South Asian
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allele count: 12
allele frequency: 1.55440414507772e-3
allele num: 7720
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-2

DP
type: SiteQuality
SIO_000300: 2.96361e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele num: 134
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South Asian
type: Population
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
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Latino
type: Population
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African
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allele count: 0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3706
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QD
type: SiteQuality
SIO_000300: 3.36e0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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DP
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SIO_000300: 2.52588e5

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.307873397855088e-4
allele num: 7646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.98e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.259e0

QD
type: SiteQuality
SIO_000300: 1.222e1

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 2.52861e5

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3690
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 2.49582e5

QD
type: SiteQuality
SIO_000300: 1.083e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 104
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4209
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3640
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.17e-2

DP
type: SiteQuality
SIO_000300: 2.39736e5

VQSLOD
type: SiteQuality
SIO_000300: -6.270000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.584e1

GenotypeQuality
all individuals: 261
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4209
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
all individuals: 427
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.672897196261682e-3
allele num: 214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 2.925e0

QD
type: SiteQuality
SIO_000300: 1.396e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.089999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.4011e5

VQSLOD
type: SiteQuality
SIO_000300: -1.506e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22178
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2757
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 2.38572e5

MQ
type: SiteQuality
SIO_000300: 5.521e1

VQSLOD
type: SiteQuality
SIO_000300: 1.72e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.96e-2

QD
type: SiteQuality
SIO_000300: 1.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeQuality
all individuals: 240
bin: 9.75e1
variant carriers: 94

GenotypeQuality
all individuals: 260
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1001
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 4

GenotypeQuality
all individuals: 84
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variant carriers: 4

GenotypeQuality
all individuals: 8
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variant carriers: 3

GenotypeQuality
all individuals: 16680
bin: 7.5e0
variant carriers: 22

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 108
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variant carriers: 5

GenotypeQuality
all individuals: 39
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variant carriers: 3

GenotypeQuality
all individuals: 4199
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 260
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 13

GenotypeQuality
all individuals: 4
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 79
allele frequency: 2.18232044198895e-2
allele num: 3620
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 1.835824809861002e-3
allele num: 7626
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 3.03030303030303e-2
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 568
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

FS
type: SiteQuality
SIO_000300: 1.143e0

QD
type: SiteQuality
SIO_000300: 1.103e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.11e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

DP
type: SiteQuality
SIO_000300: 2.2118e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 96
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15720
bin: 7.5e0
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 79
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variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1016
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variant carriers: 0

GenotypeQuality
all individuals: 261
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 104
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GenotypeQuality
all individuals: 277
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 4247
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 0
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 7.871949619522435e-4
allele num: 7622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

FS
type: SiteQuality
SIO_000300: 5.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.366e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.39e-2

DP
type: SiteQuality
SIO_000300: 2.13554e5

GenotypeQuality
all individuals: 15477
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4255
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 0
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GenotypeQuality
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GenotypeQuality
all individuals: 259
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GenotypeQuality
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GenotypeQuality
all individuals: 37
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 266
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 144
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variant carriers: 1

GenotypeQuality
all individuals: 1020
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.82e-1

FS
type: SiteQuality
SIO_000300: 5.002e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 2.11759e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.29e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 6.17e0

VQSLOD
type: SiteQuality
SIO_000300: -1.403e0

GenotypeQuality
all individuals: 143
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 7.25e1
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GenotypeQuality
all individuals: 79
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
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GenotypeQuality
all individuals: 266
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 13361
bin: 7.5e0
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GenotypeQuality
all individuals: 219
bin: 2.25e1
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GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 2.5e0
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GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
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GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.787068004459309e-4
allele num: 3588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.26e1

DP
type: SiteQuality
SIO_000300: 2.05591e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.99e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: -1.672e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

FS
type: SiteQuality
SIO_000300: 1.912e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.315097317201473e-4
allele num: 7604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.46e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.375999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.53e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.6518e5

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

QD
type: SiteQuality
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MQRankSum
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SIO_000300: -1.617e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7216
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.962085308056872e-4
allele num: 3376
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.617e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.813e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.05e0

QD
type: SiteQuality
SIO_000300: 1.32e1

DP
type: SiteQuality
SIO_000300: 1.6518e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3060
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.81e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.38735e5

QD
type: SiteQuality
SIO_000300: 7.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 108
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 536
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South Asian
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.31734e5

FS
type: SiteQuality
SIO_000300: 7.967e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.82e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.654533421575116e-4
allele num: 6044
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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VQSLOD
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QD
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DP
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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European (Finnish)
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East Asian
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Latino
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African
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South Asian
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DP
type: SiteQuality
SIO_000300: 1.12647e5

QD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 5184
num of homozygotes: 0

African
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East Asian
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Latino
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Other
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European (Non-Finnish)
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European (Finnish)
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VQSLOD
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InbreedingCoeff
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QD
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MQ
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BaseQRankSum
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FS
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DP
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: -8.82e-1

GenotypeQuality
all individuals: 1375
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3257
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.92156862745098e-3
allele num: 510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.176e1

DP
type: SiteQuality
SIO_000300: 1.07146e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.51e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.59e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.39e-1

GenotypeQuality
all individuals: 125
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 638
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.721829069134459e-4
allele num: 3674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 68
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2012
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.67e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.186e0

MQ
type: SiteQuality
SIO_000300: 5.49e1

DP
type: SiteQuality
SIO_000300: 8.6648e4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

QD
type: SiteQuality
SIO_000300: 8.93e0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 320
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 72
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 6.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 2.264150943396226e-2
allele num: 530
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.55e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.221e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

FS
type: SiteQuality
SIO_000300: 9.874000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.582e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 5.2977e4

QD
type: SiteQuality
SIO_000300: 1.318e1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 910
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.8308e4

QD
type: SiteQuality
SIO_000300: 1.201e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.36e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 9.330534173081409e-4
allele num: 8574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.208333333333333e-3
allele num: 192
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.39e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

FS
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

MQRankSum
type: SiteQuality
SIO_000300: -7.4e-2

DP
type: SiteQuality
SIO_000300: 9.65059e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.593e0

QD
type: SiteQuality
SIO_000300: 1.295e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.170411985018727e-4
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.766e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.458e0

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 9.63841e5

FS
type: SiteQuality
SIO_000300: 3.077e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.54e-1

QD
type: SiteQuality
SIO_000300: 1.188e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

African
type: Population
allele count: 77
allele frequency: 3.541858325666973e-2
allele num: 2174
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.07e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

DP
type: SiteQuality
SIO_000300: 9.64251e5

QD
type: SiteQuality
SIO_000300: 1.512e1

VQSLOD
type: SiteQuality
SIO_000300: 5.35e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.171783454417624e-4
allele num: 8534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

MQ
type: SiteQuality
SIO_000300: 5.877e1

MQRankSum
type: SiteQuality
SIO_000300: -2.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.53e-1

FS
type: SiteQuality
SIO_000300: 2.522e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.807e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

QD
type: SiteQuality
SIO_000300: 9.49e0

DP
type: SiteQuality
SIO_000300: 9.62797e5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 1.362e0

QD
type: SiteQuality
SIO_000300: 1.071e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 9.62433e5

VQSLOD
type: SiteQuality
SIO_000300: 3.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 1.111e1

FS
type: SiteQuality
SIO_000300: 5.36e-1

DP
type: SiteQuality
SIO_000300: 9.61816e5

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.234e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

VQSLOD
type: SiteQuality
SIO_000300: 8.49e-1