6-31239107-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239107
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239107
    reference: chr 6
allele count: 15
allele frequency: 1.33539875006677e-4
allele num: 112326
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.362G>A
  hgvsp: ENSP00000365402.5:p.Arg121Lys
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.631G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.360G>A
  hgvsp: ENSP00000400410.1:p.Arg121Lys
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.551G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.721G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.362G>A
  hgvsp: ENSP00000372819.3:p.Arg121Lys
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.345G>A
  hgvsp: ENST00000376237.4:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8827
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4539
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg121Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

6-31239108-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239108
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239108
    reference: chr 6
allele count: 28348
allele frequency: 2.550840441996904e-1
allele num: 111132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.359A>T
  hgvsp: ENSP00000400410.1:p.Arg121Trp
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344A>T
  hgvsp: ENSP00000365412.4:p.Glu115Val
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.630A>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.361A>T
  hgvsp: ENSP00000372819.3:p.Arg121Trp
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.361A>T
  hgvsp: ENSP00000365402.5:p.Arg121Trp
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.550A>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.720A>T
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 4.75e1
  variant carriers: 2389
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 2.25e1
  variant carriers: 1515
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 1.75e1
  variant carriers: 1014
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 5.75e1
  variant carriers: 1745
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 681
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 5.25e1
  variant carriers: 2128
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.25e1
  variant carriers: 1463
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 3.75e1
  variant carriers: 2776
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 7.5e0
  variant carriers: 392
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.5e0
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.75e1
  variant carriers: 661
genotype depth: GenotypeDepth
  all individuals: 8837
  bin: 2.75e1
  variant carriers: 2085
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 3.25e1
  variant carriers: 2491
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 4.25e1
  variant carriers: 2682
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.25e1
  variant carriers: 486
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 1139
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 340
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 1.25e1
  variant carriers: 610
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 7.25e1
  variant carriers: 854
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 6.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 1.25e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 1.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 9794
  bin: 6.25e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 5.25e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 7.5e0
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 2.25e1
  variant carriers: 115
hgvs: p.Arg121Trp
num of homozygotes: 3223
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS

6-31239108-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239108
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239108
    reference: chr 6
allele count: 4
allele frequency: 3.599323327214484e-5
allele num: 111132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.361A>G
  hgvsp: ENSP00000372819.3:p.Arg121Gly
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.630A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344A>G
  hgvsp: ENSP00000365412.4:p.Glu115Gly
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.550A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.359A>G
  hgvsp: ENSP00000400410.1:p.Arg121Gly
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.361A>G
  hgvsp: ENSP00000365402.5:p.Arg121Gly
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.720A>G
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1095
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8837
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3094
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2829
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3429
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg121Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-31239111-G-GCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239111
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239113
    reference: chr 6
allele count: 414
allele frequency: 3.736664440312652e-3
allele num: 110794
alternate allele: GCC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.355_356insGG
  hgvsp: ENSP00000400410.1:p.Gln120GlyfsTer32
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.357_358insGG
  hgvsp: ENSP00000365402.5:p.Gln120GlyfsTer32
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.626_627insGG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-4_344-3insGG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.357_358insGG
  hgvsp: ENSP00000372819.3:p.Gln120GlyfsTer32
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.546_547insGG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.716_717insGG
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 3.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12686
  bin: 2.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 2.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 4.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 4.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 5.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 3.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 1.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 5.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 4950
  bin: 2.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.25e1
  variant carriers: 12
hgvs: p.Gln120GlyfsTer32
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

6-31239111-G-GCCAAGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239111
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239117
    reference: chr 6
allele count: 2
allele frequency: 1.805151903532682e-5
allele num: 110794
alternate allele: GCCAAGT
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.357_358insACTTGG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.716_717insACTTGG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.626_627insACTTGG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.357_358insACTTGG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.546_547insACTTGG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-4_344-3insACTTGG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.355_356insACTTGG
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12686
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19608
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu119_Gln120insThrTrp
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

6-31239112-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239112
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239112
    reference: chr 6
allele count: 411
allele frequency: 3.73806275579809e-3
allele num: 109950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.546C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.355C>T
  hgvsp: ENST00000415537.1:c.355C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.357C>T
  hgvsp: ENST00000376228.5:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.716C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.357C>T
  hgvsp: ENST00000383329.3:c.357C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-4C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.626C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5193
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 5.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4933
  bin: 2.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 11654
  bin: 3.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 4.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 4.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 12214
  bin: 2.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 6315
  bin: 3.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 5.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 3.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 3.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 7.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 7.5e0
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 6275
  bin: 6.75e1
  variant carriers: 16
hgvs: c.344-4C>T
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

6-31239113-AGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239113
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239111
    reference: chr 6
allele count: 410
allele frequency: 3.731411201514407e-3
allele num: 109878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.713_714delCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.352_353delCC
  hgvsp: ENSP00000400410.1:p.Leu119ProfsTer19
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.354_355delCC
  hgvsp: ENSP00000372819.3:p.Leu119ProfsTer19
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.354_355delCC
  hgvsp: ENSP00000365402.5:p.Leu119ProfsTer19
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.543_544delCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.623_624delCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-7_344-6delCC
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11635
  bin: 3.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 3.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 2.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 4.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 7.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 8739
  bin: 9.75e1
  variant carriers: 160
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 4.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 1.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 5.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 1.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 3.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 7.5e0
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 6267
  bin: 6.75e1
  variant carriers: 14
hgvs: p.Leu119ProfsTer19
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: AGG
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-31239113-AGGGTG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239113
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239108
    reference: chr 6
allele count: 4
allele frequency: 3.640401172209178e-5
allele num: 109878
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.351_355delCACCC
  hgvsp: ENSP00000365402.5:p.Thr118ProfsTer19
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-10_344-6delCACCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.349_353delCACCC
  hgvsp: ENSP00000400410.1:p.Thr118ProfsTer19
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.620_624delCACCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.710_714delCACCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.351_355delCACCC
  hgvsp: ENSP00000372819.3:p.Thr118ProfsTer19
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.540_544delCACCC
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1936
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5354
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8739
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr118ProfsTer19
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: AGGGTG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

6-31239114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239114
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239114
    reference: chr 6
allele count: 1648
allele frequency: 1.610727759641887e-2
allele num: 102314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.714C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.544C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.353C>T
  hgvsp: ENSP00000400410.1:p.Leu119Phe
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.355C>T
  hgvsp: ENSP00000372819.3:p.Leu119Phe
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.355C>T
  hgvsp: ENSP00000365402.5:p.Leu119Phe
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-6C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.624C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11583
  bin: 3.25e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 2.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 5.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 1.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 7.5e0
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 6.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 1.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 12201
  bin: 2.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 4.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 3.75e1
  variant carriers: 190
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 16656
  bin: 6.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 4.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 5.25e1
  variant carriers: 8
hgvs: p.Leu119Phe
num of homozygotes: 59
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-31239114-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239114
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239114
    reference: chr 6
allele count: 19174
allele frequency: 1.874034833942569e-1
allele num: 102314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.714C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.624C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.355C>A
  hgvsp: ENSP00000365402.5:p.Leu119Ile
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.544C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.355C>A
  hgvsp: ENSP00000372819.3:p.Leu119Ile
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-6C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.353C>A
  hgvsp: ENSP00000400410.1:p.Leu119Ile
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4978
  bin: 2.25e1
  variant carriers: 2759
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.5e0
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 6178
  bin: 3.75e1
  variant carriers: 2033
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 12201
  bin: 2.75e1
  variant carriers: 2868
genotype depth: GenotypeDepth
  all individuals: 5268
  bin: 1.25e1
  variant carriers: 1478
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 6.25e1
  variant carriers: 371
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.75e1
  variant carriers: 535
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 7.5e0
  variant carriers: 998
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 1.75e1
  variant carriers: 2187
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.75e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 3523
  bin: 4.25e1
  variant carriers: 1609
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 4.75e1
  variant carriers: 1243
genotype depth: GenotypeDepth
  all individuals: 11583
  bin: 3.25e1
  variant carriers: 2523
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 5.25e1
  variant carriers: 818
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 7.25e1
  variant carriers: 179
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 8.25e1
  variant carriers: 371
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 1.25e1
  variant carriers: 302
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 3.25e1
  variant carriers: 437
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 1.75e1
  variant carriers: 438
genotype quality: GenotypeQuality
  all individuals: 5085
  bin: 2.25e1
  variant carriers: 479
genotype quality: GenotypeQuality
  all individuals: 4800
  bin: 6.75e1
  variant carriers: 349
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.75e1
  variant carriers: 287
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.5e0
  variant carriers: 292
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 8.75e1
  variant carriers: 257
hgvs: p.Leu119Ile
num of homozygotes: 688
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD

6-31239115-GGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239115
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239113
    reference: chr 6
allele count: 1
allele frequency: 9.317927692881103e-6
allele num: 107320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.352_353delAC
  hgvsp: ENSP00000372819.3:p.Thr118ProfsTer20
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.350_351delAC
  hgvsp: ENSP00000400410.1:p.Thr118ProfsTer20
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.541_542delAC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.711_712delAC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-9_344-8delAC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.352_353delAC
  hgvsp: ENSP00000365402.5:p.Thr118ProfsTer20
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.621_622delAC
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11953
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6435
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7078
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19138
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr118ProfsTer20
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: GGT
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS

6-31239116-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239116
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239116
    reference: chr 6
allele count: 18073
allele frequency: 1.729010408694321e-1
allele num: 104528
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.351C>T
  hgvsp: ENSP00000400410.1:p.Thr118Ile
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-8C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.712C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.353C>T
  hgvsp: ENSP00000365402.5:p.Thr118Ile
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.353C>T
  hgvsp: ENSP00000372819.3:p.Thr118Ile
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.542C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.622C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 1.25e1
  variant carriers: 1572
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 4.25e1
  variant carriers: 1398
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 1.75e1
  variant carriers: 2260
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 5.75e1
  variant carriers: 415
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 7.5e0
  variant carriers: 991
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 2.5e0
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 12629
  bin: 2.75e1
  variant carriers: 2836
genotype depth: GenotypeDepth
  all individuals: 4889
  bin: 2.25e1
  variant carriers: 2755
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 5.25e1
  variant carriers: 626
genotype depth: GenotypeDepth
  all individuals: 12073
  bin: 3.25e1
  variant carriers: 2302
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 1965
  bin: 4.75e1
  variant carriers: 1013
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 6.75e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 6249
  bin: 3.75e1
  variant carriers: 1890
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 6.25e1
  variant carriers: 279
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 4.25e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.25e1
  variant carriers: 351
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 3.75e1
  variant carriers: 407
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 7.75e1
  variant carriers: 300
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.75e1
  variant carriers: 262
genotype quality: GenotypeQuality
  all individuals: 14289
  bin: 9.75e1
  variant carriers: 13114
genotype quality: GenotypeQuality
  all individuals: 18025
  bin: 6.25e1
  variant carriers: 328
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 1.25e1
  variant carriers: 280
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 1.75e1
  variant carriers: 407
hgvs: p.Thr118Ile
num of homozygotes: 843
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

6-31239123-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239123
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239123
    reference: chr 6
allele count: 1
allele frequency: 9.448759377893683e-6
allele num: 105834
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.705T>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.615T>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.346T>C
  hgvsp: ENSP00000372819.3:p.Ser116Pro
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.346T>C
  hgvsp: ENSP00000365402.5:p.Ser116Pro
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-15T>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.535T>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.344T>C
  hgvsp: ENSP00000400410.1:p.Ser116Pro
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6665
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11828
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3633
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser116Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-31239124-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239124
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239124
    reference: chr 6
allele count: 1098
allele frequency: 1.045774044231099e-2
allele num: 104994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-16G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.343G>T
  hgvsp: ENST00000415537.1:c.343G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.534G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.345G>T
  hgvsp: ENST00000376228.5:c.345G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.704G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.345G>T
  hgvsp: ENST00000383329.3:c.345G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.614G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 2.25e1
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 4.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 1.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12024
  bin: 1.25e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 2.5e0
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 7.5e0
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10963
  bin: 3.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 10020
  bin: 2.75e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 3.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 3.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 3.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 2.75e1
  variant carriers: 15
hgvs: c.345G>T
num of homozygotes: 24
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

6-31239127-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239127
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239127
    reference: chr 6
allele count: 1
allele frequency: 9.650646593321753e-6
allele num: 103620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-19A>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-2A>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-2A>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-2A>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.611A>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.701A>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-2A>T
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4674
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9896
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16692
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5214
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 7.5e0
  variant carriers: 0
hgvs: c.344-2A>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-31239133-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239133
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239133
    reference: chr 6
allele count: 347
allele frequency: 3.596078512653637e-3
allele num: 96494
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-8G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-8G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.695G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-25G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-8G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.605G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-8G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11610
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 2.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3688
  bin: 3.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 3.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 2.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11902
  bin: 1.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 9588
  bin: 6.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 3.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 4235
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 7.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 1.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 8.75e1
  variant carriers: 2
hgvs: c.344-8G>T
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/6-31239135-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239135
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239135
    reference: chr 6
allele count: 1
allele frequency: 1.179773955310163e-5
allele num: 84762
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-10G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.693G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.603G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-10G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-10G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-10G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-27G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11662
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11413
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4096
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5532
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3106
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

6-31239135-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239135
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239135
    reference: chr 6
allele count: 3594
allele frequency: 4.240107595384724e-2
allele num: 84762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-10G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-10G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.693G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-27G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-10G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.603G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-10G>C
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 2.75e1
  variant carriers: 654
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11413
  bin: 1.25e1
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 7.5e0
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 4830
  bin: 3.25e1
  variant carriers: 565
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 3.75e1
  variant carriers: 400
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 4.25e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 2.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 11662
  bin: 1.75e1
  variant carriers: 589
genotype depth: GenotypeDepth
  all individuals: 8275
  bin: 2.25e1
  variant carriers: 733
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3677
  bin: 2.5e0
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.25e1
  variant carriers: 101
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 7.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 14225
  bin: 2.25e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 1.25e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 1313
  bin: 4.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 9.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 5532
  bin: 6.25e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 4096
  bin: 2.75e1
  variant carriers: 102
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

6-31239136-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239136
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239136
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 92668
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-11G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-11G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-11G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.692G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-11G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.602G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-28G>C
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11791
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7212
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7544
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7530
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

6-31239138-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239138
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239138
    reference: chr 6
allele count: 3
allele frequency: 3.71774853148933e-5
allele num: 80694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-13G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-30G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.600G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-13G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-13G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-13G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.690G>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12100
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7738
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11055
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6138
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7598
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4634
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12039
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4032
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-31239141-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239141
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239141
    reference: chr 6
allele count: 50161
allele frequency: 5.904211492737588e-1
allele num: 84958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-16G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-16G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-33G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-16G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.597G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.687G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-16G>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.25e1
  variant carriers: 949
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 2.25e1
  variant carriers: 7800
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 3.25e1
  variant carriers: 3226
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 1.25e1
  variant carriers: 8676
genotype depth: GenotypeDepth
  all individuals: 8476
  bin: 7.5e0
  variant carriers: 5273
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 2.75e1
  variant carriers: 5343
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 496
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 2.5e0
  variant carriers: 1217
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 3.75e1
  variant carriers: 1804
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10942
  bin: 1.75e1
  variant carriers: 9281
genotype quality: GenotypeQuality
  all individuals: 3649
  bin: 7.5e0
  variant carriers: 966
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 2.5e0
  variant carriers: 476
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 1010
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 4.75e1
  variant carriers: 1392
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.75e1
  variant carriers: 966
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 5.25e1
  variant carriers: 1315
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 1.25e1
  variant carriers: 862
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 5.75e1
  variant carriers: 914
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 1180
genotype quality: GenotypeQuality
  all individuals: 4958
  bin: 2.25e1
  variant carriers: 1239
num of homozygotes: 13410
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/6-31239141-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239141
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239141
    reference: chr 6
allele count: 1
allele frequency: 1.177052190494127e-5
allele num: 84958
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-16G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-16G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-33G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.597G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.687G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-16G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-16G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10942
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1347
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4958
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 905
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

6-31239141-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239141
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239141
    reference: chr 6
allele count: 1
allele frequency: 1.177052190494127e-5
allele num: 84958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.597G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-33G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-16G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-16G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-16G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.687G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-16G>C
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10942
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

6-31239142-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239142
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239142
    reference: chr 6
allele count: 2
allele frequency: 2.830215379390372e-5
allele num: 70666
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-17C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-17C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-17C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-34C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.686C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-17C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.596C>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12105
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22066
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3679
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3983
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14426
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

6-31239143-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239143
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239143
    reference: chr 6
allele count: 1
allele frequency: 1.469594098110102e-5
allele num: 68046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-18C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-35C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.685C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.595C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-18C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-18C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-18C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6781
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14747
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3982
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

6-31239144-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239144
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239144
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 66980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-36A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-19A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-19A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-19A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.594A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.684A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-19A>G
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12518
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20538
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/6-31239148-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239148
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239148
    reference: chr 6
allele count: 1
allele frequency: 2.368433518071148e-5
allele num: 42222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-40G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.680G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.590G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-23G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-23G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-23G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-23G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12770
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14266
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

6-31239148-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239148
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239148
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 42222
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-23G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-23G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-40G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.680G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.590G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-23G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-23G>C
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2794
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8188
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10049
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-31239149-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239149
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239149
    reference: chr 6
allele count: 3
allele frequency: 7.13063320022818e-5
allele num: 42072
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-24G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-24G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-24G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.679G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.589G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-41G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-24G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10295
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8250
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5882
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14213
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

6-31239150-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239150
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239150
    reference: chr 6
allele count: 1
allele frequency: 2.288748512313467e-5
allele num: 43692
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-25G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-42G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.678G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-25G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.588G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-25G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-25G>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14480
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8750
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12682
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3434
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8709
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/6-31239150-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239150
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239149
    reference: chr 6
allele count: 2434
allele frequency: 5.570813878970979e-2
allele num: 43692
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-43delT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.677delT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-26delT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-26delT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.587delT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-26delT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-26delT
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 10235
  bin: 1.75e1
  variant carriers: 730
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14480
  bin: 1.25e1
  variant carriers: 1060
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 2.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 2.25e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 2.5e0
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 13118
  bin: 7.5e0
  variant carriers: 895
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 9.75e1
  variant carriers: 2473
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 9.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 2750
  bin: 2.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 5542
  bin: 1.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 12682
  bin: 7.5e0
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 5.75e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 7.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 3.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 8709
  bin: 2.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 2.5e0
  variant carriers: 22
num of homozygotes: 95
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: CA
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/6-31239151-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239151
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239151
    reference: chr 6
allele count: 30519
allele frequency: 4.858320863446783e-1
allele num: 62818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-43T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-26T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-26T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.677T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.587T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-26T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-26T>G
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 1.75e1
  variant carriers: 6968
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 481
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 2.25e1
  variant carriers: 4183
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.25e1
  variant carriers: 983
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 13466
  bin: 7.5e0
  variant carriers: 7792
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 2.75e1
  variant carriers: 2070
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 14000
  bin: 1.25e1
  variant carriers: 9148
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 2.5e0
  variant carriers: 2410
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 856
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 1030
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 7.5e0
  variant carriers: 737
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 1.75e1
  variant carriers: 839
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 3.75e1
  variant carriers: 1011
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 5.25e1
  variant carriers: 997
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 5.75e1
  variant carriers: 645
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 609
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 9.25e1
  variant carriers: 572
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 2.25e1
  variant carriers: 940
num of homozygotes: 6781
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

6-31239151-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239151
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239151
    reference: chr 6
allele count: 10611
allele frequency: 1.689165525804706e-1
allele num: 62818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.677T>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-26T>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-26T>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-26T>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.587T>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-26T>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-43T>C
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 3.75e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 2.5e0
  variant carriers: 590
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 14000
  bin: 1.25e1
  variant carriers: 3603
genotype depth: GenotypeDepth
  all individuals: 13466
  bin: 7.5e0
  variant carriers: 2615
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 2.25e1
  variant carriers: 1852
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 4.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.25e1
  variant carriers: 410
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 2.75e1
  variant carriers: 889
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9595
  bin: 1.75e1
  variant carriers: 2928
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.25e1
  variant carriers: 185
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 1.25e1
  variant carriers: 214
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 3.25e1
  variant carriers: 267
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 4.75e1
  variant carriers: 289
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 7.5e0
  variant carriers: 236
genotype quality: GenotypeQuality
  all individuals: 1501
  bin: 1.75e1
  variant carriers: 261
genotype quality: GenotypeQuality
  all individuals: 25137
  bin: 9.75e1
  variant carriers: 8907
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 3.75e1
  variant carriers: 286
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 6.75e1
  variant carriers: 224
genotype quality: GenotypeQuality
  all individuals: 2636
  bin: 2.25e1
  variant carriers: 290
num of homozygotes: 915
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

6-31239152-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239152
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239152
    reference: chr 6
allele count: 1
allele frequency: 2.985609362870962e-5
allele num: 33494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-27C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-27C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-27C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-44C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.586C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-27C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.676C>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13091
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12621
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23708
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3687
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

6-31239153-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239153
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239154
    reference: chr 6
allele count: 816
allele frequency: 2.660753880266075e-2
allele num: 30668
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.584dupG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-29dupG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-29dupG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-29dupG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-46dupG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.674dupG
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-29dupG
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 2.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 2.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 1.75e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 15893
  bin: 7.5e0
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 13106
  bin: 1.25e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 2.25e1
  variant carriers: 181
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 1.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 10803
  bin: 2.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 2.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 3.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 2.5e0
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 25215
  bin: 7.5e0
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 24
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-31239157-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239157
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239157
    reference: chr 6
allele count: 2995
allele frequency: 1.302513699225885e-1
allele num: 22994
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-32G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.581G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-49G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-32G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-32G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-32G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.671G>C
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 3.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 10900
  bin: 1.25e1
  variant carriers: 1026
genotype depth: GenotypeDepth
  all individuals: 14380
  bin: 7.5e0
  variant carriers: 728
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.25e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.75e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 2.5e0
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5796
  bin: 1.75e1
  variant carriers: 845
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 2.25e1
  variant carriers: 506
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21774
  bin: 7.5e0
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 3.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 2.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 9.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 1.25e1
  variant carriers: 31
num of homozygotes: 252
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/6-31239158-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239158
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239158
    reference: chr 6
allele count: 1
allele frequency: 5.569789461958338e-5
allele num: 17954
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-33G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.580G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-50G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-33G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.670G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-33G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-33G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6846
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10675
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

6-31239159-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239159
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239159
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 18406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-34C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-34C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.579C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.669C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-34C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-51C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-34C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 14097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

6-31239159-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239159
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239159
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 18406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-34C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.579C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-34C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-51C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-34C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.669C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-34C>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3045
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

6-31239160-A-AGCCCC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239160
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239165
    reference: chr 6
allele count: 5
allele frequency: 3.11177495643515e-4
allele num: 16068
alternate allele: AGCCCC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-40_342-36dupGGGGC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-40_344-36dupGGGGC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-57_344-53dupGGGGC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-40_344-36dupGGGGC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.573_577dupGGGGC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-40_533-36dupGGGGC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.663_667dupGGGGC
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13407
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9291
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5568
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3521
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20273
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-31239163-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239163
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239163
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 12098
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-38G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.575G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-38G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-38G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.665G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-55G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-38G>C
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12418
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ

6-31239164-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239164
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239164
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 12240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-39G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-56G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.574G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-39G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-39G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.664G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-39G>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12445
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5966
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4244
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-31239165-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239165
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239165
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 12200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-57G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.573G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-40G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-40G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.663G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-40G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-40G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14265
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum

6-31239165-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239165
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239165
    reference: chr 6
allele count: 1
allele frequency: 8.19672131147541e-5
allele num: 12200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-57G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-40G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.663G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-40G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-40G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-40G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.573G>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3142
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

6-31239166-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239166
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239166
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 12336
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-41C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-41C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-41C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.572C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-41C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.662C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-58C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14355
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

6-31239166-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239166
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239167
    reference: chr 6
allele count: 1
allele frequency: 8.106355382619974e-5
allele num: 12336
alternate allele: GA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-59_344-58insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-42_533-41insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.661_662insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.571_572insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-42_344-41insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-42_342-41insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-42_344-41insT
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7331
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/6-31239167-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239167
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239168
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 13198
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.660_661insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-43_342-42insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-43_533-42insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-60_344-59insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-43_344-42insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.570_571insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-43_344-42insT
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12647
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7582
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/6-31239170-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239170
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239170
    reference: chr 6
allele count: 1
allele frequency: 3.176821907363873e-5
allele num: 31478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.658G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-45G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-45G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-62G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.568G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-45G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-45G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11721
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10495
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20226
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6318
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 2.75e1
  variant carriers: 2
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-31239170-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239170
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239171
    reference: chr 6
allele count: 16931
allele frequency: 5.378677171357774e-1
allele num: 31478
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.567_568insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-63_344-62insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-46_344-45insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-46_342-45insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.657_658insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-46_344-45insT
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-46_533-45insT
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 3.25e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.75e1
  variant carriers: 574
genotype depth: GenotypeDepth
  all individuals: 11721
  bin: 2.5e0
  variant carriers: 5363
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 4.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 20226
  bin: 7.5e0
  variant carriers: 13637
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4209
  bin: 1.75e1
  variant carriers: 3395
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 2.25e1
  variant carriers: 1373
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10495
  bin: 1.25e1
  variant carriers: 8021
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 6.75e1
  variant carriers: 704
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 1.75e1
  variant carriers: 1684
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 5.25e1
  variant carriers: 849
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.25e1
  variant carriers: 563
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 1.25e1
  variant carriers: 2266
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 4.25e1
  variant carriers: 960
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 8.25e1
  variant carriers: 500
genotype quality: GenotypeQuality
  all individuals: 4544
  bin: 2.25e1
  variant carriers: 1889
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 7.75e1
  variant carriers: 426
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 1034
num of homozygotes: 3930
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/6-31239172-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239172
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239172
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 30072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-47G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-47G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.566G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.656G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-47G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-47G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-64G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18543
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9753
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

6-31239172-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239172
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239172
    reference: chr 6
allele count: 8389
allele frequency: 2.789638201649375e-1
allele num: 30072
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-64G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.656G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-47G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-47G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-47G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.566G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-47G>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 2.5e0
  variant carriers: 2304
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 3.25e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 1.75e1
  variant carriers: 1937
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 2.25e1
  variant carriers: 706
genotype depth: GenotypeDepth
  all individuals: 18543
  bin: 7.5e0
  variant carriers: 7059
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 9816
  bin: 1.25e1
  variant carriers: 4675
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.75e1
  variant carriers: 257
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4639
  bin: 1.75e1
  variant carriers: 623
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 2.5e0
  variant carriers: 196
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 2.75e1
  variant carriers: 496
genotype quality: GenotypeQuality
  all individuals: 1935
  bin: 3.25e1
  variant carriers: 339
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 6.75e1
  variant carriers: 316
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 9.25e1
  variant carriers: 231
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 5.25e1
  variant carriers: 383
genotype quality: GenotypeQuality
  all individuals: 5808
  bin: 2.25e1
  variant carriers: 642
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 4.25e1
  variant carriers: 347
genotype quality: GenotypeQuality
  all individuals: 9753
  bin: 9.75e1
  variant carriers: 9668
num of homozygotes: 833
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

6-31239173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239173
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239173
    reference: chr 6
allele count: 1
allele frequency: 3.252455603981006e-5
allele num: 30746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-48G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-48G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.565G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-48G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-65G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.655G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-48G>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20354
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10741
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14470
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2195
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3848
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13569
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9291
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2845
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/6-31239177-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239177
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239177
    reference: chr 6
allele count: 124
allele frequency: 3.808353808353808e-3
allele num: 32560
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.342-52T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.533-52T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.561T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.651T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.344-52T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.344-52T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.344-69T>G
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20571
  bin: 7.5e0
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 1.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15302
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 1.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 7611
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 14032
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10511
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2935
  bin: 2.5e0
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

6-31239327-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239327
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239327
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 114770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+49C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+49C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.411C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+49C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+49C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+49C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.501C>G
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11517
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12799
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2301
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9682
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-31239329-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239329
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239329
    reference: chr 6
allele count: 4
allele frequency: 3.477353733808572e-5
allele num: 115030
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+47C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+47C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+47C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.409C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+47C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.499C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+47C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8257
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2737
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9713
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3554
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

6-31239331-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239331
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239331
    reference: chr 6
allele count: 2
allele frequency: 1.736774462468304e-5
allele num: 115156
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+45C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+45C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+45C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+45C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.497C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.407C>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+45C>G
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14667
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8372
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9734
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

6-31239331-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239331
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239331
    reference: chr 6
allele count: 12
allele frequency: 1.042064677480982e-4
allele num: 115156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+45C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+45C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+45C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.497C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+45C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+45C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.407C>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14667
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8372
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11916
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6148
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2475
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

6-31239333-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239333
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239333
    reference: chr 6
allele count: 2
allele frequency: 1.742281692103979e-5
allele num: 114792
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.495A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.405A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+43A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+43A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+43A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+43A>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+43A>G
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5094
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4407
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9739
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13324
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1411
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

6-31239334-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239334
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239334
    reference: chr 6
allele count: 1
allele frequency: 8.719003940989781e-6
allele num: 114692
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.404C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.494C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+42C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+42C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+42C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+42C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+42C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15727
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4971
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3178
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

6-31239335-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239335
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239335
    reference: chr 6
allele count: 22152
allele frequency: 1.923450958599611e-1
allele num: 115168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+41C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.493C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+41C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.403C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+41C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+41C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+41C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12243
  bin: 2.75e1
  variant carriers: 3805
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 4803
  bin: 1.75e1
  variant carriers: 2344
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 6314
  bin: 3.75e1
  variant carriers: 2384
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 7.5e0
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 3666
  bin: 4.25e1
  variant carriers: 1403
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 13026
  bin: 2.25e1
  variant carriers: 3479
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 9509
  bin: 3.25e1
  variant carriers: 3195
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.5e0
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 273
genotype depth: GenotypeDepth
  all individuals: 2074
  bin: 4.75e1
  variant carriers: 832
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 5.25e1
  variant carriers: 486
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 1.25e1
  variant carriers: 1083
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.5e0
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 7.25e1
  variant carriers: 176
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 1169
  bin: 4.75e1
  variant carriers: 213
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 4.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 2.25e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 24431
  bin: 9.75e1
  variant carriers: 16953
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 2.5e0
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 4394
  bin: 6.75e1
  variant carriers: 279
num of homozygotes: 2607
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

6-31239336-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239336
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239336
    reference: chr 6
allele count: 1
allele frequency: 8.632149577887885e-6
allele num: 115846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.402C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+40C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+40C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+40C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+40C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+40C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.492C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13149
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-31239338-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239338
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239338
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 116414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+38T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+38T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+38T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+38T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+38T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.490T>G
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.400T>G
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13250
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4165
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6342
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS

6-31239338-AGGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239338
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239335
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 116414
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+35_532+37delCCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+35_343+37delCCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.487_489delCCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+35_341+37delCCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.397_399delCCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+35_343+37delCCC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+35_343+37delCCC
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12349
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13250
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3070
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: AGGG
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-31239340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239340
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239340
    reference: chr 6
allele count: 2
allele frequency: 1.719927075092016e-5
allele num: 116284
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+36C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.488C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.398C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+36C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+36C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+36C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+36C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14144
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9889
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3447
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6305
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2109
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum

6-31239346-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239346
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239346
    reference: chr 6
allele count: 1827
allele frequency: 1.5624465501317e-2
allele num: 116932
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.482A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+30A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+30A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+30A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+30A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.392A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+30A>C
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12866
  bin: 2.75e1
  variant carriers: 348
genotype depth: GenotypeDepth
  all individuals: 10339
  bin: 3.25e1
  variant carriers: 328
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 14955
  bin: 2.25e1
  variant carriers: 264
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 1.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6651
  bin: 3.75e1
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 4.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 1.75e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3838
  bin: 4.25e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6555
  bin: 6.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 14888
  bin: 9.75e1
  variant carriers: 1675
genotype quality: GenotypeQuality
  all individuals: 3526
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 13625
  bin: 6.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 4.75e1
  variant carriers: 7
num of homozygotes: 60
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

6-31239359-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239359
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239359
    reference: chr 6
allele count: 87
allele frequency: 7.405389761835856e-4
allele num: 117482
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.469C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+17C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+17C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+17C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+17C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+17C>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.379C>T
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16511
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13529
  bin: 2.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 7030
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 5
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

6-31239359-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239359
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239359
    reference: chr 6
allele count: 1
allele frequency: 8.511942254983741e-6
allele num: 117482
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.379C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+17C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.469C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+17C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+17C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+17C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+17C>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4663
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15564
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2505
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

6-31239363-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239363
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239363
    reference: chr 6
allele count: 1542
allele frequency: 1.304590602209851e-2
allele num: 118198
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+13G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+13G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+13G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+13G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.465G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.375G>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+13G>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13517
  bin: 2.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 3.75e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 3.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 6.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 5.25e1
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 16195
  bin: 2.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 5.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 4.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.75e1
  variant carriers: 167
genotype quality: GenotypeQuality
  all individuals: 5245
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4638
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3400
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6960
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15304
  bin: 6.25e1
  variant carriers: 2
num of homozygotes: 34
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-31239367-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239367
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239367
    reference: chr 6
allele count: 14
allele frequency: 1.179086376499124e-4
allele num: 118736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.461C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.371C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+9C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+9C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+9C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+9C>A
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+9C>A
  variant of: http://identifiers.org/hgnc/4933
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11128
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13695
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16421
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6879
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5365
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3500
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15556
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

6-31239368-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239368
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239368
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 118712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+8A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+8A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+8A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+8A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.370A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.460A>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+8A>C
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6886
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13767
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2586
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15108
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
hgvs: c.343+8A>C
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

http://identifiers.org/exac.variant/6-31239371-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239371
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239371
    reference: chr 6
allele count: 5
allele frequency: 4.201115816360826e-5
allele num: 119016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343+5G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343+5G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341+5G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.367G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.457G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532+5G>T
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343+5G>T
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11227
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4809
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7185
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
hgvs: c.343+5G>T
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

6-31239376-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239376
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239376
    reference: chr 6
allele count: 3
allele frequency: 2.512184092850324e-5
allele num: 119418
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.452G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.532G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.343G>C
  hgvsp: ENSP00000365402.5:p.Gly115Arg
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.343G>C
  hgvsp: ENSP00000365412.4:p.Glu115Gln
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.362G>C
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.343G>C
  hgvsp: ENSP00000372819.3:p.Gly115Arg
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.341G>C
  hgvsp: ENSP00000400410.1:p.Gly115Arg
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6827
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10819
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly115Arg
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1485
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1567
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10964
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 857
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 851
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20122
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1743
bin: 7.25e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.202704379109291e-5
allele num: 16122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.845103701758992e-5
allele num: 60944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 8.880994671403197e-4
allele num: 9008
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.352e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.775e0

FS
type: SiteQuality
SIO_000300: 6.729e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.18e-2

MQ
type: SiteQuality
SIO_000300: 5.077e1

DP
type: SiteQuality
SIO_000300: 2.220546e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

QD
type: SiteQuality
SIO_000300: 3.82e0

GenotypeQuality
all individuals: 1056
bin: 9.25e1
variant carriers: 142

GenotypeQuality
all individuals: 680
bin: 2.5e0
variant carriers: 47

GenotypeQuality
all individuals: 656
bin: 8.75e1
variant carriers: 96

GenotypeQuality
all individuals: 814
bin: 2.75e1
variant carriers: 95

GenotypeQuality
all individuals: 1201
bin: 3.25e1
variant carriers: 110

GenotypeQuality
all individuals: 706
bin: 4.25e1
variant carriers: 81

GenotypeQuality
all individuals: 28884
bin: 9.75e1
variant carriers: 23850

GenotypeQuality
all individuals: 1196
bin: 7.25e1
variant carriers: 98

GenotypeQuality
all individuals: 1618
bin: 7.75e1
variant carriers: 105

GenotypeQuality
all individuals: 1153
bin: 4.75e1
variant carriers: 121

GenotypeQuality
all individuals: 1297
bin: 8.25e1
variant carriers: 114

Latino
type: Population
allele count: 2619
allele frequency: 2.390470974808324e-1
allele num: 10956
num of homozygotes: 257

South Asian
type: Population
allele count: 4598
allele frequency: 2.857675574891237e-1
allele num: 16090
num of homozygotes: 530

European (Finnish)
type: Population
allele count: 1240
allele frequency: 2.029459901800327e-1
allele num: 6110
num of homozygotes: 145

African
type: Population
allele count: 2308
allele frequency: 2.590347923681257e-1
allele num: 8910
num of homozygotes: 261

East Asian
type: Population
allele count: 2465
allele frequency: 3.053009660639088e-1
allele num: 8074
num of homozygotes: 358

European (Non-Finnish)
type: Population
allele count: 14903
allele frequency: 2.476321823801137e-1
allele num: 60182
num of homozygotes: 1646

Other
type: Population
allele count: 215
allele frequency: 2.654320987654321e-1
allele num: 810
num of homozygotes: 26

QD
type: SiteQuality
SIO_000300: 2.301e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.32e0

MQ
type: SiteQuality
SIO_000300: 5.139e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

DP
type: SiteQuality
SIO_000300: 2.198981e6

FS
type: SiteQuality
SIO_000300: 6.78e-1

GenotypeQuality
all individuals: 656
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1153
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28884
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1056
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.127418765972983e-5
allele num: 10956
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.864512119328776e-4
allele num: 16090
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.301e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.32e0

DP
type: SiteQuality
SIO_000300: 2.198981e6

FS
type: SiteQuality
SIO_000300: 6.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

MQ
type: SiteQuality
SIO_000300: 5.139e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-2

GenotypeQuality
all individuals: 6595
bin: 6.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2690
bin: 7.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1855
bin: 7.5e0
variant carriers: 26

GenotypeQuality
all individuals: 115
bin: 2.5e0
variant carriers: 13

GenotypeQuality
all individuals: 1529
bin: 9.25e1
variant carriers: 14

GenotypeQuality
all individuals: 2017
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 917
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 308
bin: 5.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1045
bin: 2.75e1
variant carriers: 22

GenotypeQuality
all individuals: 19608
bin: 6.25e1
variant carriers: 19

GenotypeQuality
all individuals: 8907
bin: 9.75e1
variant carriers: 159

Other
type: Population
allele count: 4
allele frequency: 4.938271604938272e-3
allele num: 810
num of homozygotes: 0

South Asian
type: Population
allele count: 79
allele frequency: 4.942442442442442e-3
allele num: 15984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.591957811470006e-4
allele num: 6068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 203
allele frequency: 3.37815349796978e-3
allele num: 60092
num of homozygotes: 0

Latino
type: Population
allele count: 51
allele frequency: 4.622077215878194e-3
allele num: 11034
num of homozygotes: 0

African
type: Population
allele count: 60
allele frequency: 6.868131868131868e-3
allele num: 8736
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.61090458488228e-3
allele num: 8070
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3008e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.393e0

VQSLOD
type: SiteQuality
SIO_000300: -2.54e0

MQ
type: SiteQuality
SIO_000300: 5.291e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.833704e6

GenotypeQuality
all individuals: 917
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4950
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6595
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 428
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8907
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1529
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.256256256256256e-5
allele num: 15984
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.062896501721951e-5
allele num: 11034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60092
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.393e0

VQSLOD
type: SiteQuality
SIO_000300: -2.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQ
type: SiteQuality
SIO_000300: 5.291e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.56e-1

FS
type: SiteQuality
SIO_000300: 1.3008e1

QD
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.833704e6

GenotypeQuality
all individuals: 1610
bin: 4.75e1
variant carriers: 14

GenotypeQuality
all individuals: 776
bin: 1.75e1
variant carriers: 20

GenotypeQuality
all individuals: 306
bin: 2.5e0
variant carriers: 13

GenotypeQuality
all individuals: 8777
bin: 9.75e1
variant carriers: 159

GenotypeQuality
all individuals: 449
bin: 1.25e1
variant carriers: 17

GenotypeQuality
all individuals: 5344
bin: 2.25e1
variant carriers: 33

GenotypeQuality
all individuals: 1505
bin: 9.25e1
variant carriers: 15

GenotypeQuality
all individuals: 18131
bin: 6.25e1
variant carriers: 18

GenotypeQuality
all individuals: 908
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1985
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 889
bin: 5.75e1
variant carriers: 11

South Asian
type: Population
allele count: 79
allele frequency: 4.964182480834485e-3
allele num: 15914
num of homozygotes: 0

Latino
type: Population
allele count: 51
allele frequency: 4.663496708119971e-3
allele num: 10936
num of homozygotes: 0

African
type: Population
allele count: 59
allele frequency: 6.836616454229432e-3
allele num: 8630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.629101756711965e-4
allele num: 6034
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.962779156327543e-3
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.619332336821126e-3
allele num: 8028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 201
allele frequency: 3.372370054696151e-3
allele num: 59602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.384e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

QD
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.66e-1

MQ
type: SiteQuality
SIO_000300: 5.298e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 1.3129e1

DP
type: SiteQuality
SIO_000300: 1.817754e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.28e0

GenotypeQuality
all individuals: 1506
bin: 3.75e1
variant carriers: 25

GenotypeQuality
all individuals: 5354
bin: 2.25e1
variant carriers: 31

GenotypeQuality
all individuals: 827
bin: 5.75e1
variant carriers: 12

GenotypeQuality
all individuals: 904
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 328
bin: 2.5e0
variant carriers: 13

GenotypeQuality
all individuals: 1498
bin: 9.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1889
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 18226
bin: 6.25e1
variant carriers: 19

GenotypeQuality
all individuals: 1611
bin: 4.75e1
variant carriers: 15

GenotypeQuality
all individuals: 1138
bin: 2.75e1
variant carriers: 21

GenotypeQuality
all individuals: 1988
bin: 8.25e1
variant carriers: 10

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.642311524410495e-4
allele num: 6022
num of homozygotes: 0

Latino
type: Population
allele count: 51
allele frequency: 4.666910688140556e-3
allele num: 10928
num of homozygotes: 0

African
type: Population
allele count: 58
allele frequency: 6.728538283062645e-3
allele num: 8620
num of homozygotes: 0

East Asian
type: Population
allele count: 13
allele frequency: 1.619735858460005e-3
allele num: 8026
num of homozygotes: 0

South Asian
type: Population
allele count: 79
allele frequency: 4.967303822937625e-3
allele num: 15904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 201
allele frequency: 3.373955081075637e-3
allele num: 59574
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 4.975124378109453e-3
allele num: 804
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

VQSLOD
type: SiteQuality
SIO_000300: -2.402e0

DP
type: SiteQuality
SIO_000300: 1.815747e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.361e0

MQ
type: SiteQuality
SIO_000300: 5.294e1

QD
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 1.3161e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

GenotypeQuality
all individuals: 1611
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18226
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1498
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.357169234901131e-5
allele num: 59574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.257545271629779e-4
allele num: 15904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.361e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.402e0

MQ
type: SiteQuality
SIO_000300: 5.294e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

FS
type: SiteQuality
SIO_000300: 1.3161e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

QD
type: SiteQuality
SIO_000300: 1.51e0

DP
type: SiteQuality
SIO_000300: 1.815747e6

GenotypeQuality
all individuals: 708
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1019
bin: 3.25e1
variant carriers: 15

GenotypeQuality
all individuals: 834
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 624
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1346
bin: 7.25e1
variant carriers: 7

GenotypeQuality
all individuals: 883
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 499
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5085
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 16460
bin: 9.75e1
variant carriers: 1518

GenotypeQuality
all individuals: 4800
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1349
bin: 7.75e1
variant carriers: 5

East Asian
type: Population
allele count: 53
allele frequency: 7.021727609962904e-3
allele num: 7548
num of homozygotes: 2

Latino
type: Population
allele count: 33
allele frequency: 3.253154574132492e-3
allele num: 10144
num of homozygotes: 0

Other
type: Population
allele count: 20
allele frequency: 2.73972602739726e-2
allele num: 730
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 133
allele frequency: 2.422586520947177e-2
allele num: 5490
num of homozygotes: 5

South Asian
type: Population
allele count: 221
allele frequency: 1.488215488215488e-2
allele num: 14850
num of homozygotes: 10

African
type: Population
allele count: 76
allele frequency: 9.758602978941962e-3
allele num: 7788
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 1112
allele frequency: 1.994118069005093e-2
allele num: 55764
num of homozygotes: 37

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

MQ
type: SiteQuality
SIO_000300: 5.016e1

MQRankSum
type: SiteQuality
SIO_000300: -2.177e0

FS
type: SiteQuality
SIO_000300: 5.737e0

QD
type: SiteQuality
SIO_000300: 9.050000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -1.151e0

DP
type: SiteQuality
SIO_000300: 1.760102e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 2315
bin: 2.5e0
variant carriers: 131

GenotypeQuality
all individuals: 602
bin: 4.25e1
variant carriers: 276

GenotypeQuality
all individuals: 834
bin: 3.75e1
variant carriers: 425

GenotypeQuality
all individuals: 1092
bin: 2.75e1
variant carriers: 311

GenotypeQuality
all individuals: 16460
bin: 9.75e1
variant carriers: 14108

GenotypeQuality
all individuals: 16656
bin: 6.25e1
variant carriers: 338

GenotypeQuality
all individuals: 684
bin: 4.75e1
variant carriers: 367

GenotypeQuality
all individuals: 624
bin: 9.25e1
variant carriers: 337

GenotypeQuality
all individuals: 675
bin: 5.25e1
variant carriers: 356

GenotypeQuality
all individuals: 1346
bin: 7.25e1
variant carriers: 299

GenotypeQuality
all individuals: 1349
bin: 7.75e1
variant carriers: 303

European (Finnish)
type: Population
allele count: 1289
allele frequency: 2.347905282331512e-1
allele num: 5490
num of homozygotes: 44

European (Non-Finnish)
type: Population
allele count: 9692
allele frequency: 1.738038878129259e-1
allele num: 55764
num of homozygotes: 365

Latino
type: Population
allele count: 1703
allele frequency: 1.678824921135647e-1
allele num: 10144
num of homozygotes: 55

East Asian
type: Population
allele count: 1604
allele frequency: 2.125066242713302e-1
allele num: 7548
num of homozygotes: 83

African
type: Population
allele count: 1562
allele frequency: 2.005649717514124e-1
allele num: 7788
num of homozygotes: 51

Other
type: Population
allele count: 139
allele frequency: 1.904109589041096e-1
allele num: 730
num of homozygotes: 3

South Asian
type: Population
allele count: 3185
allele frequency: 2.144781144781145e-1
allele num: 14850
num of homozygotes: 87

VQSLOD
type: SiteQuality
SIO_000300: -1.151e0

MQRankSum
type: SiteQuality
SIO_000300: -2.177e0

MQ
type: SiteQuality
SIO_000300: 5.016e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 5.737e0

DP
type: SiteQuality
SIO_000300: 1.760102e6

QD
type: SiteQuality
SIO_000300: 9.050000000000001e0

GenotypeQuality
all individuals: 1484
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5724
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2524
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.717386824208285e-5
allele num: 58228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15524
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.11e1

DP
type: SiteQuality
SIO_000300: 1.68034e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.98e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

FS
type: SiteQuality
SIO_000300: 1.758e0

GenotypeQuality
all individuals: 598
bin: 5.25e1
variant carriers: 342

GenotypeQuality
all individuals: 678
bin: 4.75e1
variant carriers: 353

GenotypeQuality
all individuals: 2295
bin: 7.5e0
variant carriers: 273

GenotypeQuality
all individuals: 1741
bin: 2.5e0
variant carriers: 125

GenotypeQuality
all individuals: 1125
bin: 3.25e1
variant carriers: 407

GenotypeQuality
all individuals: 1250
bin: 2.75e1
variant carriers: 289

GenotypeQuality
all individuals: 6085
bin: 2.25e1
variant carriers: 439

GenotypeQuality
all individuals: 517
bin: 8.75e1
variant carriers: 243

GenotypeQuality
all individuals: 691
bin: 9.25e1
variant carriers: 341

GenotypeQuality
all individuals: 5324
bin: 6.75e1
variant carriers: 348

GenotypeQuality
all individuals: 1464
bin: 7.25e1
variant carriers: 289

Latino
type: Population
allele count: 1607
allele frequency: 1.527857007035558e-1
allele num: 10518
num of homozygotes: 54

European (Finnish)
type: Population
allele count: 1238
allele frequency: 2.243566509604929e-1
allele num: 5518
num of homozygotes: 45

European (Non-Finnish)
type: Population
allele count: 8781
allele frequency: 1.546440773484555e-1
allele num: 56782
num of homozygotes: 312

African
type: Population
allele count: 1191
allele frequency: 1.476934523809524e-1
allele num: 8064
num of homozygotes: 17

East Asian
type: Population
allele count: 2032
allele frequency: 2.633488854328668e-1
allele num: 7716
num of homozygotes: 243

Other
type: Population
allele count: 127
allele frequency: 1.697860962566845e-1
allele num: 748
num of homozygotes: 4

South Asian
type: Population
allele count: 3097
allele frequency: 2.039915689632459e-1
allele num: 15182
num of homozygotes: 168

FS
type: SiteQuality
SIO_000300: 6.129e0

MQRankSum
type: SiteQuality
SIO_000300: -2.265e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.463e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

DP
type: SiteQuality
SIO_000300: 1.691175e6

VQSLOD
type: SiteQuality
SIO_000300: -1.144e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

MQ
type: SiteQuality
SIO_000300: 4.978e1

GenotypeQuality
all individuals: 1452
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2349
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6335
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2588
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21163
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 275
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.747701772169597e-5
allele num: 57218
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.866e0

QD
type: SiteQuality
SIO_000300: 1.825e1

DP
type: SiteQuality
SIO_000300: 1.409153e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.825e1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

GenotypeQuality
all individuals: 15438
bin: 2.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1389
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 19307
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 254
bin: 1.75e1
variant carriers: 15

GenotypeQuality
all individuals: 226
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 820
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 5875
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2252
bin: 9.75e1
variant carriers: 1026

GenotypeQuality
all individuals: 1537
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 322
bin: 8.75e1
variant carriers: 7

GenotypeQuality
all individuals: 454
bin: 9.25e1
variant carriers: 10

GenotypeQuality
all individuals: 337
bin: 4.25e1
variant carriers: 7

Latino
type: Population
allele count: 91
allele frequency: 8.488805970149253e-3
allele num: 10720
num of homozygotes: 2

African
type: Population
allele count: 439
allele frequency: 5.464276823500124e-2
allele num: 8034
num of homozygotes: 17

European (Non-Finnish)
type: Population
allele count: 453
allele frequency: 7.983785689108213e-3
allele num: 56740
num of homozygotes: 4

Other
type: Population
allele count: 9
allele frequency: 1.18421052631579e-2
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 15
allele frequency: 2.688172043010753e-3
allele num: 5580
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.299714062906161e-4
allele num: 7694
num of homozygotes: 0

South Asian
type: Population
allele count: 90
allele frequency: 5.819216345532135e-3
allele num: 15466
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.72e-2

FS
type: SiteQuality
SIO_000300: 4.497e0

QD
type: SiteQuality
SIO_000300: 1.31e1

MQRankSum
type: SiteQuality
SIO_000300: -1.149e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.271e0

MQ
type: SiteQuality
SIO_000300: 4.949e1

VQSLOD
type: SiteQuality
SIO_000300: 2.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

DP
type: SiteQuality
SIO_000300: 1.377271e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

GenotypeQuality
all individuals: 415
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17155
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3409
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.78782136088962e-5
allele num: 55934
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.111e1

MQRankSum
type: SiteQuality
SIO_000300: -1.749e0

DP
type: SiteQuality
SIO_000300: 1.323492e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.345e0

VQSLOD
type: SiteQuality
SIO_000300: -2.144e0

QD
type: SiteQuality
SIO_000300: 3.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.03e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.69e-1

GenotypeQuality
all individuals: 6402
bin: 7.5e0
variant carriers: 13

GenotypeQuality
all individuals: 1182
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 16303
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1137
bin: 1.25e1
variant carriers: 17

GenotypeQuality
all individuals: 5285
bin: 3.25e1
variant carriers: 21

GenotypeQuality
all individuals: 709
bin: 5.25e1
variant carriers: 16

GenotypeQuality
all individuals: 525
bin: 2.5e0
variant carriers: 9

GenotypeQuality
all individuals: 1213
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 192
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 1321
bin: 9.75e1
variant carriers: 150

GenotypeQuality
all individuals: 3320
bin: 6.75e1
variant carriers: 21

African
type: Population
allele count: 51
allele frequency: 7.020925110132159e-3
allele num: 7264
num of homozygotes: 0

South Asian
type: Population
allele count: 36
allele frequency: 2.446649449503874e-3
allele num: 14714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 206
allele frequency: 3.974992281568385e-3
allele num: 51824
num of homozygotes: 0

Latino
type: Population
allele count: 48
allele frequency: 4.789463181001796e-3
allele num: 10022
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7164
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 4.398826979472141e-3
allele num: 682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 6.218905472636816e-4
allele num: 4824
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.247e1

VQSLOD
type: SiteQuality
SIO_000300: -1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.297e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

QD
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 1.0659e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.71e-1

DP
type: SiteQuality
SIO_000300: 1.205719e6

GenotypeQuality
all individuals: 3677
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14225
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.626545217957059e-4
allele num: 6148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46256
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.725e0

DP
type: SiteQuality
SIO_000300: 1.157084e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.041e0

QD
type: SiteQuality
SIO_000300: 7.1e0

FS
type: SiteQuality
SIO_000300: 1.0631e1

MQ
type: SiteQuality
SIO_000300: 5.015e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

GenotypeQuality
all individuals: 1692
bin: 1.75e1
variant carriers: 89

GenotypeQuality
all individuals: 424
bin: 5.75e1
variant carriers: 93

GenotypeQuality
all individuals: 7205
bin: 7.5e0
variant carriers: 87

GenotypeQuality
all individuals: 274
bin: 8.75e1
variant carriers: 75

GenotypeQuality
all individuals: 5171
bin: 3.25e1
variant carriers: 92

GenotypeQuality
all individuals: 529
bin: 5.25e1
variant carriers: 86

GenotypeQuality
all individuals: 2177
bin: 6.75e1
variant carriers: 93

GenotypeQuality
all individuals: 766
bin: 7.75e1
variant carriers: 87

GenotypeQuality
all individuals: 3364
bin: 3.75e1
variant carriers: 105

GenotypeQuality
all individuals: 3106
bin: 9.75e1
variant carriers: 2301

African
type: Population
allele count: 432
allele frequency: 7.017543859649122e-2
allele num: 6156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1416
allele frequency: 3.061224489795918e-2
allele num: 46256
num of homozygotes: 0

Other
type: Population
allele count: 27
allele frequency: 4.856115107913669e-2
allele num: 556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 156
allele frequency: 4.081632653061224e-2
allele num: 3822
num of homozygotes: 0

South Asian
type: Population
allele count: 1004
allele frequency: 7.717140661029977e-2
allele num: 13010
num of homozygotes: 0

Latino
type: Population
allele count: 291
allele frequency: 3.301565690946222e-2
allele num: 8814
num of homozygotes: 0

East Asian
type: Population
allele count: 268
allele frequency: 4.359141184124918e-2
allele num: 6148
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 1.157084e6

MQ
type: SiteQuality
SIO_000300: 5.015e1

VQSLOD
type: SiteQuality
SIO_000300: -1.725e0

FS
type: SiteQuality
SIO_000300: 1.0631e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.041e0

GenotypeQuality
all individuals: 1656
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 745
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4645
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6036
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2811
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16963
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6978
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.054e0

MQ
type: SiteQuality
SIO_000300: 4.624e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.51e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.504e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

DP
type: SiteQuality
SIO_000300: 1.124931e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 2.486e1

GenotypeQuality
all individuals: 3073
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2896
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4678
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5992
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.74233508826262e-5
allele num: 12916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.304147465437788e-5
allele num: 43400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.712328767123288e-4
allele num: 5840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.829e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.78e-2

MQ
type: SiteQuality
SIO_000300: 4.704e1

QD
type: SiteQuality
SIO_000300: 9.02e0

DP
type: SiteQuality
SIO_000300: 1.078712e6

MQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.044e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

GenotypeQuality
all individuals: 2023
bin: 6.25e1
variant carriers: 1257

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 651

GenotypeQuality
all individuals: 878
bin: 7.25e1
variant carriers: 821

GenotypeQuality
all individuals: 1565
bin: 2.75e1
variant carriers: 932

GenotypeQuality
all individuals: 25298
bin: 9.75e1
variant carriers: 25258

GenotypeQuality
all individuals: 905
bin: 8.25e1
variant carriers: 873

GenotypeQuality
all individuals: 1870
bin: 3.25e1
variant carriers: 1327

GenotypeQuality
all individuals: 1616
bin: 3.75e1
variant carriers: 1346

GenotypeQuality
all individuals: 1318
bin: 6.75e1
variant carriers: 1141

GenotypeQuality
all individuals: 756
bin: 9.25e1
variant carriers: 732

European (Finnish)
type: Population
allele count: 2182
allele frequency: 5.577709611451943e-1
allele num: 3912
num of homozygotes: 540

African
type: Population
allele count: 4403
allele frequency: 6.873243833905713e-1
allele num: 6406
num of homozygotes: 1396

European (Non-Finnish)
type: Population
allele count: 25739
allele frequency: 5.620850803633822e-1
allele num: 45792
num of homozygotes: 6382

Other
type: Population
allele count: 371
allele frequency: 6.288135593220339e-1
allele num: 590
num of homozygotes: 103

Latino
type: Population
allele count: 5444
allele frequency: 6.159764652636343e-1
allele num: 8838
num of homozygotes: 1481

South Asian
type: Population
allele count: 8375
allele frequency: 6.27999400119976e-1
allele num: 13336
num of homozygotes: 2482

East Asian
type: Population
allele count: 3647
allele frequency: 5.994411571334648e-1
allele num: 6084
num of homozygotes: 1026

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

MQ
type: SiteQuality
SIO_000300: 5.113e1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 2.902e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

QD
type: SiteQuality
SIO_000300: 3.304e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 1.036531e6

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25298
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8838
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.498500299940011e-5
allele num: 13336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.113e1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 1.036531e6

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

FS
type: SiteQuality
SIO_000300: 2.902e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

QD
type: SiteQuality
SIO_000300: 3.304e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1347
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.131477709889115e-4
allele num: 8838
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 5.113e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 1.036531e6

FS
type: SiteQuality
SIO_000300: 2.902e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.84e-1

QD
type: SiteQuality
SIO_000300: 3.304e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.705611461709023e-4
allele num: 11726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5030
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37952
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7580
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.5e-2

MQ
type: SiteQuality
SIO_000300: 5.569e1

DP
type: SiteQuality
SIO_000300: 8.509e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.881e-1

GenotypeQuality
all individuals: 400
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 1798
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 454
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.37211855104281e-4
allele num: 7288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36420
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.427e0

QD
type: SiteQuality
SIO_000300: 2.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 8.37858e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.08e-2

MQ
type: SiteQuality
SIO_000300: 5.322e1

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.43e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7170
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 4.644e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.14e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.257e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.47e-1

QD
type: SiteQuality
SIO_000300: 2.094e1

DP
type: SiteQuality
SIO_000300: 8.33886e5

GenotypeQuality
all individuals: 14180
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variant carriers: 1

GenotypeQuality
all individuals: 80
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.386349679796474e-5
allele num: 22798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.893e1

VQSLOD
type: SiteQuality
SIO_000300: -2.191e0

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.45e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

DP
type: SiteQuality
SIO_000300: 7.85008e5

QD
type: SiteQuality
SIO_000300: 1.06e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1984
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variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3208
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.45e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.191e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.893e1

DP
type: SiteQuality
SIO_000300: 7.85008e5

MQRankSum
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 1.06e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 259
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.316482359136387e-4
allele num: 7596
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 5.081300813008131e-4
allele num: 3936
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.953e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.84445e5

MQ
type: SiteQuality
SIO_000300: 5.425e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 3.75e1
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GenotypeQuality
all individuals: 5542
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GenotypeQuality
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GenotypeQuality
all individuals: 611
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GenotypeQuality
all individuals: 169
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GenotypeQuality
all individuals: 164
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GenotypeQuality
all individuals: 191
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GenotypeQuality
all individuals: 930
bin: 4.75e1
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GenotypeQuality
all individuals: 2557
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3046
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.340123291342804e-4
allele num: 7462
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.038e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.014e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

FS
type: SiteQuality
SIO_000300: 6.496e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.77945e5

GenotypeQuality
all individuals: 8750
bin: 1.75e1
variant carriers: 79

GenotypeQuality
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GenotypeQuality
all individuals: 611
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variant carriers: 48

GenotypeQuality
all individuals: 169
bin: 7.25e1
variant carriers: 68

GenotypeQuality
all individuals: 733
bin: 4.25e1
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GenotypeQuality
all individuals: 304
bin: 6.75e1
variant carriers: 55

GenotypeQuality
all individuals: 612
bin: 6.25e1
variant carriers: 61

GenotypeQuality
all individuals: 930
bin: 4.75e1
variant carriers: 49

GenotypeQuality
all individuals: 164
bin: 8.25e1
variant carriers: 85

GenotypeQuality
all individuals: 82
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variant carriers: 53

European (Finnish)
type: Population
allele count: 100
allele frequency: 6.596306068601583e-2
allele num: 1516
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 1658
allele frequency: 6.881381256744418e-2
allele num: 24094
num of homozygotes: 60

African
type: Population
allele count: 355
allele frequency: 1.077063106796116e-1
allele num: 3296
num of homozygotes: 24

East Asian
type: Population
allele count: 10
allele frequency: 3.282994090610637e-3
allele num: 3046
num of homozygotes: 0

South Asian
type: Population
allele count: 100
allele frequency: 1.340123291342804e-2
allele num: 7462
num of homozygotes: 4

Latino
type: Population
allele count: 187
allele frequency: 4.696132596685083e-2
allele num: 3982
num of homozygotes: 1

Other
type: Population
allele count: 24
allele frequency: 8.108108108108109e-2
allele num: 296
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.014e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 5.038e1

FS
type: SiteQuality
SIO_000300: 6.496e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.255e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.896e1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

DP
type: SiteQuality
SIO_000300: 7.77945e5

GenotypeQuality
all individuals: 4576
bin: 2.5e0
variant carriers: 307

GenotypeQuality
all individuals: 1189
bin: 2.75e1
variant carriers: 652

GenotypeQuality
all individuals: 965
bin: 4.25e1
variant carriers: 723

GenotypeQuality
all individuals: 1499
bin: 3.25e1
variant carriers: 990

GenotypeQuality
all individuals: 25137
bin: 9.75e1
variant carriers: 20102

GenotypeQuality
all individuals: 923
bin: 7.75e1
variant carriers: 744

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 495

GenotypeQuality
all individuals: 860
bin: 8.25e1
variant carriers: 719

GenotypeQuality
all individuals: 768
bin: 7.25e1
variant carriers: 621

GenotypeQuality
all individuals: 1245
bin: 6.25e1
variant carriers: 907

African
type: Population
allele count: 2114
allele frequency: 4.450526315789474e-1
allele num: 4750
num of homozygotes: 399

Other
type: Population
allele count: 213
allele frequency: 4.840909090909091e-1
allele num: 440
num of homozygotes: 49

European (Finnish)
type: Population
allele count: 852
allele frequency: 3.701129452649869e-1
allele num: 2302
num of homozygotes: 156

South Asian
type: Population
allele count: 6080
allele frequency: 5.507246376811594e-1
allele num: 11040
num of homozygotes: 1718

East Asian
type: Population
allele count: 2919
allele frequency: 6.329141370338248e-1
allele num: 4612
num of homozygotes: 890

European (Non-Finnish)
type: Population
allele count: 15404
allele frequency: 4.673260117711304e-1
allele num: 32962
num of homozygotes: 3000

Latino
type: Population
allele count: 2937
allele frequency: 4.375744934445769e-1
allele num: 6712
num of homozygotes: 569

MQ
type: SiteQuality
SIO_000300: 4.984e1

VQSLOD
type: SiteQuality
SIO_000300: 2.169e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

FS
type: SiteQuality
SIO_000300: 5.42e0

DP
type: SiteQuality
SIO_000300: 7.28161e5

QD
type: SiteQuality
SIO_000300: 3.231e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.456e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

GenotypeQuality
all individuals: 860
bin: 8.25e1
variant carriers: 197

GenotypeQuality
all individuals: 965
bin: 4.25e1
variant carriers: 205

GenotypeQuality
all individuals: 1189
bin: 2.75e1
variant carriers: 235

GenotypeQuality
all individuals: 4576
bin: 2.5e0
variant carriers: 150

GenotypeQuality
all individuals: 1244
bin: 5.25e1
variant carriers: 249

GenotypeQuality
all individuals: 617
bin: 8.75e1
variant carriers: 184

GenotypeQuality
all individuals: 1245
bin: 6.25e1
variant carriers: 236

GenotypeQuality
all individuals: 818
bin: 5.75e1
variant carriers: 205

GenotypeQuality
all individuals: 923
bin: 7.75e1
variant carriers: 229

GenotypeQuality
all individuals: 697
bin: 9.25e1
variant carriers: 199

European (Non-Finnish)
type: Population
allele count: 5052
allele frequency: 1.53267398822887e-1
allele num: 32962
num of homozygotes: 364

African
type: Population
allele count: 1128
allele frequency: 2.374736842105263e-1
allele num: 4750
num of homozygotes: 117

European (Finnish)
type: Population
allele count: 629
allele frequency: 2.732406602953953e-1
allele num: 2302
num of homozygotes: 60

East Asian
type: Population
allele count: 432
allele frequency: 9.366869037294015e-2
allele num: 4612
num of homozygotes: 35

Latino
type: Population
allele count: 1641
allele frequency: 2.444874851013111e-1
allele num: 6712
num of homozygotes: 183

Other
type: Population
allele count: 84
allele frequency: 1.909090909090909e-1
allele num: 440
num of homozygotes: 7

South Asian
type: Population
allele count: 1645
allele frequency: 1.490036231884058e-1
allele num: 11040
num of homozygotes: 149

MQRankSum
type: SiteQuality
SIO_000300: -6.75e-1

FS
type: SiteQuality
SIO_000300: 5.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-1

DP
type: SiteQuality
SIO_000300: 7.28161e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.456e-1

QD
type: SiteQuality
SIO_000300: 3.231e1

VQSLOD
type: SiteQuality
SIO_000300: 2.169e1

MQ
type: SiteQuality
SIO_000300: 4.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.28e-1

GenotypeQuality
all individuals: 29
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.611042531702391e-5
allele num: 17822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.336e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.15e-2

DP
type: SiteQuality
SIO_000300: 6.29044e5

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.535e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-1

QD
type: SiteQuality
SIO_000300: 6.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 63
bin: 8.25e1
variant carriers: 24

GenotypeQuality
all individuals: 1774
bin: 1.75e1
variant carriers: 44

GenotypeQuality
all individuals: 130
bin: 4.75e1
variant carriers: 35

GenotypeQuality
all individuals: 47
bin: 8.75e1
variant carriers: 22

GenotypeQuality
all individuals: 194
bin: 6.75e1
variant carriers: 28

GenotypeQuality
all individuals: 504
bin: 6.25e1
variant carriers: 22

GenotypeQuality
all individuals: 671
bin: 9.75e1
variant carriers: 537

GenotypeQuality
all individuals: 91
bin: 7.25e1
variant carriers: 29

GenotypeQuality
all individuals: 107
bin: 5.75e1
variant carriers: 26

Latino
type: Population
allele count: 103
allele frequency: 4.026583268178265e-2
allele num: 2558
num of homozygotes: 0

African
type: Population
allele count: 57
allele frequency: 2.560646900269542e-2
allele num: 2226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 7.751937984496124e-3
allele num: 774
num of homozygotes: 0

East Asian
type: Population
allele count: 21
allele frequency: 9.433962264150943e-3
allele num: 2226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 484
allele frequency: 2.923058340379273e-2
allele num: 16558
num of homozygotes: 0

South Asian
type: Population
allele count: 134
allele frequency: 2.189542483660131e-2
allele num: 6120
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 5.339805825242718e-2
allele num: 206
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.87e-1

FS
type: SiteQuality
SIO_000300: 8.939e0

MQ
type: SiteQuality
SIO_000300: 4.843e1

VQSLOD
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.16e-2

QD
type: SiteQuality
SIO_000300: 1.09e1

DP
type: SiteQuality
SIO_000300: 6.03013e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

GenotypeQuality
all individuals: 199
bin: 6.75e1
variant carriers: 69

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 51

GenotypeQuality
all individuals: 2727
bin: 9.75e1
variant carriers: 2706

GenotypeQuality
all individuals: 6224
bin: 2.25e1
variant carriers: 55

GenotypeQuality
all individuals: 2718
bin: 2.5e0
variant carriers: 14

GenotypeQuality
all individuals: 1758
bin: 1.75e1
variant carriers: 44

GenotypeQuality
all individuals: 427
bin: 6.25e1
variant carriers: 64

GenotypeQuality
all individuals: 45
bin: 8.75e1
variant carriers: 33

GenotypeQuality
all individuals: 186
bin: 4.25e1
variant carriers: 60

GenotypeQuality
all individuals: 106
bin: 7.25e1
variant carriers: 53

East Asian
type: Population
allele count: 5
allele frequency: 3.888024883359254e-3
allele num: 1286
num of homozygotes: 0

Other
type: Population
allele count: 29
allele frequency: 1.686046511627907e-1
allele num: 172
num of homozygotes: 4

African
type: Population
allele count: 603
allele frequency: 2.841658812441094e-1
allele num: 2122
num of homozygotes: 68

European (Non-Finnish)
type: Population
allele count: 1453
allele frequency: 1.227818151090079e-1
allele num: 11834
num of homozygotes: 96

Latino
type: Population
allele count: 435
allele frequency: 2.210365853658537e-1
allele num: 1968
num of homozygotes: 34

South Asian
type: Population
allele count: 461
allele frequency: 9.175955414012739e-2
allele num: 5024
num of homozygotes: 50

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.530612244897959e-2
allele num: 588
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.87e-1

DP
type: SiteQuality
SIO_000300: 5.16755e5

FS
type: SiteQuality
SIO_000300: 6.023e0

QD
type: SiteQuality
SIO_000300: 3.208e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.57e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.179e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQ
type: SiteQuality
SIO_000300: 4.327e1

GenotypeQuality
all individuals: 6352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3532
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 29
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23322
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.070663811563169e-4
allele num: 9340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1204
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.392e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

QD
type: SiteQuality
SIO_000300: 3.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 5.06877e5

FS
type: SiteQuality
SIO_000300: 3.542e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.01e-2

GenotypeQuality
all individuals: 3045
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22996
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4424
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.41e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 4.281e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 5.00847e5

VQSLOD
type: SiteQuality
SIO_000300: -5.731000000000001e-1

QD
type: SiteQuality
SIO_000300: 3.373e1

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22996
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 554
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.731000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.41e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 3.373e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 5.00847e5

MQ
type: SiteQuality
SIO_000300: 4.281e1

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1771
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3305
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.541984732824427e-4
allele num: 1048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 496
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.960159362549801e-4
allele num: 1004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.647859922178988e-4
allele num: 8224
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.207e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.086e0

MQRankSum
type: SiteQuality
SIO_000300: -1.666e0

FS
type: SiteQuality
SIO_000300: 4.528e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.759999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.992e-1

QD
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 4.8473e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.68e-1

GenotypeQuality
all individuals: 14102
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6022
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.04e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -7.248e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 1.999e0

DP
type: SiteQuality
SIO_000300: 4.49329e5

QD
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 4.996e1

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 871
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 4.276e1

VQSLOD
type: SiteQuality
SIO_000300: -1.092e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

DP
type: SiteQuality
SIO_000300: 4.49217e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

QD
type: SiteQuality
SIO_000300: 6.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.03e-2

GenotypeQuality
all individuals: 78
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-2

DP
type: SiteQuality
SIO_000300: 4.48895e5

VQSLOD
type: SiteQuality
SIO_000300: 1.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 8.76e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.133e1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 2106
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2937
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14265
bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 883
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.878526194588371e-4
allele num: 3474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 4.48895e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-2

MQ
type: SiteQuality
SIO_000300: 5.133e1

QD
type: SiteQuality
SIO_000300: 8.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 25
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6150
bin: 2.5e0
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GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 4.87e1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.29e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 4.48779e5

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

GenotypeQuality
all individuals: 2006
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14355
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.445086705202312e-3
allele num: 692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

MQ
type: SiteQuality
SIO_000300: 4.87e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.29e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.25e0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 4.48779e5

GenotypeQuality
all individuals: 31
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5039
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 79
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GenotypeQuality
all individuals: 5205
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.17e0

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.73e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.1e-2

DP
type: SiteQuality
SIO_000300: 4.49753e5

MQ
type: SiteQuality
SIO_000300: 4.917e1

GenotypeQuality
all individuals: 3164
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 797
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variant carriers: 1

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16010
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.802281368821293e-4
allele num: 2630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6660
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1010
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2694
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

MQ
type: SiteQuality
SIO_000300: 4.867e1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

QD
type: SiteQuality
SIO_000300: 3.122e1

DP
type: SiteQuality
SIO_000300: 4.55556e5

FS
type: SiteQuality
SIO_000300: 1.569e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
all individuals: 6551
bin: 7.5e0
variant carriers: 1546

GenotypeQuality
all individuals: 811
bin: 5.75e1
variant carriers: 789

GenotypeQuality
all individuals: 6318
bin: 2.5e0
variant carriers: 536

GenotypeQuality
all individuals: 2197
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variant carriers: 1727

GenotypeQuality
all individuals: 1482
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variant carriers: 1039

GenotypeQuality
all individuals: 797
bin: 4.75e1
variant carriers: 718

GenotypeQuality
all individuals: 962
bin: 6.25e1
variant carriers: 708

GenotypeQuality
all individuals: 13759
bin: 9.75e1
variant carriers: 13689

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 566

GenotypeQuality
all individuals: 611
bin: 9.25e1
variant carriers: 587

European (Finnish)
type: Population
allele count: 469
allele frequency: 4.643564356435644e-1
allele num: 1010
num of homozygotes: 87

Other
type: Population
allele count: 132
allele frequency: 5.641025641025641e-1
allele num: 234
num of homozygotes: 30

African
type: Population
allele count: 1604
allele frequency: 6.098859315589353e-1
allele num: 2630
num of homozygotes: 391

East Asian
type: Population
allele count: 1270
allele frequency: 5.669642857142857e-1
allele num: 2240
num of homozygotes: 323

Latino
type: Population
allele count: 1587
allele frequency: 5.89086859688196e-1
allele num: 2694
num of homozygotes: 394

European (Non-Finnish)
type: Population
allele count: 8106
allele frequency: 5.063085571517801e-1
allele num: 16010
num of homozygotes: 1704

South Asian
type: Population
allele count: 3763
allele frequency: 5.650150150150151e-1
allele num: 6660
num of homozygotes: 1001

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

QD
type: SiteQuality
SIO_000300: 3.122e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.97e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

FS
type: SiteQuality
SIO_000300: 1.569e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.867e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 4.55556e5

GenotypeQuality
all individuals: 331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 5.75e1
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GenotypeQuality
all individuals: 263
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GenotypeQuality
all individuals: 4639
bin: 1.75e1
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GenotypeQuality
all individuals: 10281
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GenotypeQuality
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GenotypeQuality
all individuals: 377
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GenotypeQuality
all individuals: 336
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GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 5808
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2458
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.321e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 4.5648e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

QD
type: SiteQuality
SIO_000300: 3.122e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.99e0

MQ
type: SiteQuality
SIO_000300: 4.885e1

GenotypeQuality
all individuals: 10281
bin: 7.5e0
variant carriers: 578

GenotypeQuality
all individuals: 675
bin: 4.75e1
variant carriers: 301

GenotypeQuality
all individuals: 623
bin: 6.25e1
variant carriers: 272

GenotypeQuality
all individuals: 377
bin: 7.25e1
variant carriers: 317

GenotypeQuality
all individuals: 1278
bin: 3.75e1
variant carriers: 386

GenotypeQuality
all individuals: 4040
bin: 1.25e1
variant carriers: 835

GenotypeQuality
all individuals: 442
bin: 5.75e1
variant carriers: 366

GenotypeQuality
all individuals: 336
bin: 7.75e1
variant carriers: 274

GenotypeQuality
all individuals: 331
bin: 8.25e1
variant carriers: 278

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 276

East Asian
type: Population
allele count: 969
allele frequency: 4.400544959128065e-1
allele num: 2202
num of homozygotes: 172

European (Finnish)
type: Population
allele count: 367
allele frequency: 3.417132216014898e-1
allele num: 1074
num of homozygotes: 45

Latino
type: Population
allele count: 979
allele frequency: 3.851298190401259e-1
allele num: 2542
num of homozygotes: 129

African
type: Population
allele count: 796
allele frequency: 3.238405207485761e-1
allele num: 2458
num of homozygotes: 61

Other
type: Population
allele count: 66
allele frequency: 3.08411214953271e-1
allele num: 214
num of homozygotes: 4

South Asian
type: Population
allele count: 1486
allele frequency: 2.276348039215686e-1
allele num: 6528
num of homozygotes: 153

European (Non-Finnish)
type: Population
allele count: 3726
allele frequency: 2.475089677162216e-1
allele num: 15054
num of homozygotes: 269

QD
type: SiteQuality
SIO_000300: 3.122e1

VQSLOD
type: SiteQuality
SIO_000300: 6.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.76e-1

DP
type: SiteQuality
SIO_000300: 4.5648e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.134e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.321e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 4.885e1

GenotypeQuality
all individuals: 230
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5410
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.42756138321121e-5
allele num: 15558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.91e-2

MQ
type: SiteQuality
SIO_000300: 5.417e1

DP
type: SiteQuality
SIO_000300: 4.54906e5

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

QD
type: SiteQuality
SIO_000300: 1.844e1

GenotypeQuality
all individuals: 5301
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 80
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 216
bin: 9.75e1
variant carriers: 94

GenotypeQuality
all individuals: 118
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 897
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 486
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 596
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3941
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 3004
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 6

Other
type: Population
allele count: 4
allele frequency: 1.626016260162602e-2
allele num: 246
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 5.686125852918878e-3
allele num: 2638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.115137998327293e-3
allele num: 7174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 90
allele frequency: 5.532333415293828e-3
allele num: 16268
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 2.558479532163743e-3
allele num: 2736
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1172
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.407e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.89e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.03e0

QD
type: SiteQuality
SIO_000300: 7.28e0

FS
type: SiteQuality
SIO_000300: 1.3328e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.85e-1

DP
type: SiteQuality
SIO_000300: 4.53873e5

MQ
type: SiteQuality
SIO_000300: 4.888e1

GenotypeQuality
all individuals: 1796
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9843
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3055
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 1.25e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6198
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.45e-1

FS
type: SiteQuality
SIO_000300: 2.357e0

MQ
type: SiteQuality
SIO_000300: 5.073e1

VQSLOD
type: SiteQuality
SIO_000300: -2.453e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.999e0

DP
type: SiteQuality
SIO_000300: 1.573358e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.71e-1

GenotypeQuality
all individuals: 2155
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4355
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10882
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2385
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2564
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6146
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2473
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.32211158526948e-5
allele num: 63270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9058
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -9.949e-1

MQ
type: SiteQuality
SIO_000300: 5.455e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.171e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

DP
type: SiteQuality
SIO_000300: 1.581476e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 13030
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2475
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16084
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.198285337436799e-4
allele num: 9098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.735e0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

FS
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 1.088e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

DP
type: SiteQuality
SIO_000300: 1.591217e6

MQ
type: SiteQuality
SIO_000300: 5.095e1

GenotypeQuality
all individuals: 3196
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6291
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9734
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 4410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6224
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.460830639144492e-4
allele num: 16084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 1.591217e6

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.735e0

VQSLOD
type: SiteQuality
SIO_000300: -1.252e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

QD
type: SiteQuality
SIO_000300: 1.088e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQ
type: SiteQuality
SIO_000300: 5.095e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

GenotypeQuality
all individuals: 3174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3620
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2615
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2548
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.2482836100362e-4
allele num: 16022
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.391e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.606376e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.191e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

FS
type: SiteQuality
SIO_000300: 2.964e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 7.13e0

GenotypeQuality
all individuals: 1432
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6306
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1782
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9744
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14258
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3644
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11220
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.241418050181001e-5
allele num: 16022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9022
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.614112e6

MQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.027e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

FS
type: SiteQuality
SIO_000300: 1.977e0

QD
type: SiteQuality
SIO_000300: 1.226e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQ
type: SiteQuality
SIO_000300: 5.344e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

GenotypeQuality
all individuals: 772
bin: 5.25e1
variant carriers: 242

GenotypeQuality
all individuals: 1423
bin: 3.25e1
variant carriers: 125

GenotypeQuality
all individuals: 9287
bin: 6.25e1
variant carriers: 299

GenotypeQuality
all individuals: 1439
bin: 3.75e1
variant carriers: 153

GenotypeQuality
all individuals: 954
bin: 2.75e1
variant carriers: 79

GenotypeQuality
all individuals: 3138
bin: 7.75e1
variant carriers: 236

GenotypeQuality
all individuals: 2759
bin: 8.25e1
variant carriers: 269

GenotypeQuality
all individuals: 533
bin: 5.75e1
variant carriers: 173

GenotypeQuality
all individuals: 1519
bin: 8.75e1
variant carriers: 156

GenotypeQuality
all individuals: 2082
bin: 9.25e1
variant carriers: 227

South Asian
type: Population
allele count: 1696
allele frequency: 1.053808872871878e-1
allele num: 16094
num of homozygotes: 100

European (Non-Finnish)
type: Population
allele count: 11607
allele frequency: 1.831855055080332e-1
allele num: 63362
num of homozygotes: 1156

Latino
type: Population
allele count: 2343
allele frequency: 2.0811867116717e-1
allele num: 11258
num of homozygotes: 239

Other
type: Population
allele count: 133
allele frequency: 1.575829383886256e-1
allele num: 844
num of homozygotes: 20

European (Finnish)
type: Population
allele count: 1768
allele frequency: 2.826086956521739e-1
allele num: 6256
num of homozygotes: 224

East Asian
type: Population
allele count: 3704
allele frequency: 4.48534754177767e-1
allele num: 8258
num of homozygotes: 828

African
type: Population
allele count: 901
allele frequency: 9.905452946350043e-2
allele num: 9096
num of homozygotes: 40

FS
type: SiteQuality
SIO_000300: 2.634e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.094e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 1.718736e6

MQ
type: SiteQuality
SIO_000300: 5.107e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 2131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3277
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1625
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1330
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3965
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3000
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.569858712715855e-5
allele num: 63700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.262e0

DP
type: SiteQuality
SIO_000300: 1.726467e6

QD
type: SiteQuality
SIO_000300: 6.64e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e0

FS
type: SiteQuality
SIO_000300: 4.371e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.536e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

GenotypeQuality
all individuals: 12500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3070
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4838
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 2.3e1

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

DP
type: SiteQuality
SIO_000300: 1.73389e6

MQ
type: SiteQuality
SIO_000300: 5.477e1

FS
type: SiteQuality
SIO_000300: 3.109e0

GenotypeQuality
all individuals: 4838
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2265
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4165
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6342
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

FS
type: SiteQuality
SIO_000300: 3.109e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

MQ
type: SiteQuality
SIO_000300: 5.477e1

DP
type: SiteQuality
SIO_000300: 1.73389e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 2.3e1

GenotypeQuality
all individuals: 13250
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 13019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 927
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3071
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4819
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 952
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4144
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63922
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.165908598657137e-4
allele num: 9234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.019e0

QD
type: SiteQuality
SIO_000300: 7.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.846e0

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQ
type: SiteQuality
SIO_000300: 5.077e1

DP
type: SiteQuality
SIO_000300: 1.742317e6

FS
type: SiteQuality
SIO_000300: 6.773e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.24e-1

GenotypeQuality
all individuals: 434
bin: 5.25e1
variant carriers: 9

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 4915
bin: 7.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1102
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 760
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1041
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1933
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3144
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 4286
bin: 8.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2328
bin: 8.75e1
variant carriers: 14

African
type: Population
allele count: 8
allele frequency: 8.528784648187633e-4
allele num: 9380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.094091903719912e-3
allele num: 6398
num of homozygotes: 0

Latino
type: Population
allele count: 614
allele frequency: 5.405881317133298e-2
allele num: 11358
num of homozygotes: 18

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 8.716767324575057e-4
allele num: 64244
num of homozygotes: 0

South Asian
type: Population
allele count: 383
allele frequency: 2.360700197238659e-2
allele num: 16224
num of homozygotes: 7

Other
type: Population
allele count: 4
allele frequency: 4.640371229698376e-3
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 755
allele frequency: 8.918025041341839e-2
allele num: 8466
num of homozygotes: 35

MQRankSum
type: SiteQuality
SIO_000300: -6.7e-2

DP
type: SiteQuality
SIO_000300: 1.77598e6

QD
type: SiteQuality
SIO_000300: 1.146e1

MQ
type: SiteQuality
SIO_000300: 5.187e1

FS
type: SiteQuality
SIO_000300: 1.486e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.98e-2

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 295
bin: 7.5e0
variant carriers: 7

GenotypeQuality
all individuals: 3768
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 429
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2505
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3402
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 15564
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 4663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13938
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 5266
bin: 7.75e1
variant carriers: 4

East Asian
type: Population
allele count: 71
allele frequency: 8.6185967467832e-3
allele num: 8238
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223690651003426e-4
allele num: 16344
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.755926251097454e-4
allele num: 11390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.392197506419577e-4
allele num: 64646
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.047339757017176e-4
allele num: 9548
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.298850574712644e-3
allele num: 870
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.366e0

MQRankSum
type: SiteQuality
SIO_000300: -1.338e0

MQ
type: SiteQuality
SIO_000300: 4.694e1

QD
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.823687e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.284e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3768
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5266
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13938
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3402
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.118453255017132e-5
allele num: 16344
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.694e1

MQRankSum
type: SiteQuality
SIO_000300: -1.338e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.284e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 1.823687e6

VQSLOD
type: SiteQuality
SIO_000300: -2.366e0

GenotypeQuality
all individuals: 222
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 2521
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 372
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3757
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 15440
bin: 9.75e1
variant carriers: 1492

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 449
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 4.25e1
variant carriers: 1

Latino
type: Population
allele count: 113
allele frequency: 9.907066456251097e-3
allele num: 11406
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 26
allele frequency: 4.024767801857585e-3
allele num: 6460
num of homozygotes: 0

African
type: Population
allele count: 674
allele frequency: 6.964248811737962e-2
allele num: 9678
num of homozygotes: 24

European (Non-Finnish)
type: Population
allele count: 609
allele frequency: 9.389743747879984e-3
allele num: 64858
num of homozygotes: 6

South Asian
type: Population
allele count: 108
allele frequency: 6.59582264565775e-3
allele num: 16374
num of homozygotes: 2

Other
type: Population
allele count: 11
allele frequency: 1.261467889908257e-2
allele num: 872
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.366e1

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.65e-1

FS
type: SiteQuality
SIO_000300: 4.191e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.77e-1

DP
type: SiteQuality
SIO_000300: 1.861707e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.81e-2

GenotypeQuality
all individuals: 358
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4751
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15107
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3831
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.072007864340132e-5
allele num: 65104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.051647581210563e-3
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.28310502283105e-3
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.81e1

QD
type: SiteQuality
SIO_000300: 9.550000000000001e0

FS
type: SiteQuality
SIO_000300: 2.084e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.618e0

VQSLOD
type: SiteQuality
SIO_000300: -1.566e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.871873e6

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5368
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3500
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3824
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65098
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.682e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.696e0

MQ
type: SiteQuality
SIO_000300: 5.467e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.55e-1

DP
type: SiteQuality
SIO_000300: 1.873689e6

VQSLOD
type: SiteQuality
SIO_000300: -1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2601
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15141
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 3526
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.659079072332343e-5
allele num: 65282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.324e0

VQSLOD
type: SiteQuality
SIO_000300: -8.631e-1

MQ
type: SiteQuality
SIO_000300: 5.181e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 1.878919e6

QD
type: SiteQuality
SIO_000300: 1.033e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

FS
type: SiteQuality
SIO_000300: 9.079000000000001e0