9-441320-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 441320
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 441320
    reference: chr 9
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107099
  ensembl transcript: ENST00000495184
  gene symbol: DOCK8
  hgvsc: ENST00000495184.1:n.7213A>G
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000394888
  ensembl transcript: ENST00000432829
  gene symbol: DOCK8
  hgvsc: ENST00000432829.2:c.5054A>G
  hgvsp: ENSP00000394888.2:p.Lys1685Arg
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000419438
  ensembl transcript: ENST00000469391
  gene symbol: DOCK8
  hgvsc: ENST00000469391.1:c.4958A>G
  hgvsp: ENSP00000419438.1:p.Lys1653Arg
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000371766
  ensembl transcript: ENST00000382329
  gene symbol: DOCK8
  hgvsc: ENST00000382329.1:c.3659A>G
  hgvsp: ENSP00000371766.1:p.Lys1220Arg
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000408464
  ensembl transcript: ENST00000453981
  gene symbol: DOCK8
  hgvsc: ENST00000453981.1:c.5258A>G
  hgvsp: ENSP00000408464.1:p.Lys1753Arg
  variant of: http://identifiers.org/hgnc/19191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3776
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7794
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4520
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5350
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys1753Arg
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/7-5267804-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267804
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267804
    reference: chr 7
allele count: 1
allele frequency: 8.399267583866688e-6
allele num: 119058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.906C>A
  hgvsp: ENST00000484262.1:c.906C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1465C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1029C>A
  hgvsp: ENST00000401525.3:c.1029C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1418C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1029C>A
  hgvsp: ENST00000382384.2:c.1029C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1083C>A
  hgvsp: ENST00000404704.3:c.1083C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1083C>A
  hgvsp: ENST00000288828.4:c.1083C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29811
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19786
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1608
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro361Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

7-5267813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267813
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267813
    reference: chr 7
allele count: 8
allele frequency: 6.750485191123112e-5
allele num: 118510
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1092C>T
  hgvsp: ENST00000288828.4:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1474C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1427C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.915C>T
  hgvsp: ENST00000484262.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1038C>T
  hgvsp: ENST00000401525.3:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1092C>T
  hgvsp: ENST00000404704.3:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1038C>T
  hgvsp: ENST00000382384.2:c.1038C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19501
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1384
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly364Gly
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

7-5267823-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267823
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267823
    reference: chr 7
allele count: 1
allele frequency: 8.490405841399219e-6
allele num: 117780
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1102G>C
  hgvsp: ENSP00000288828.4:p.Ala368Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1048G>C
  hgvsp: ENSP00000384945.3:p.Ala350Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1102G>C
  hgvsp: ENSP00000385297.3:p.Ala368Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.925G>C
  hgvsp: ENSP00000429654.1:p.Ala309Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1484G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1437G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1048G>C
  hgvsp: ENSP00000371821.2:p.Ala350Pro
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6670
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala368Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/7-5267824-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267824
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267824
    reference: chr 7
allele count: 1
allele frequency: 8.498487269266071e-6
allele num: 117668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1049C>A
  hgvsp: ENSP00000384945.3:p.Ala350Asp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1438C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1103C>A
  hgvsp: ENSP00000288828.4:p.Ala368Asp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1485C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1049C>A
  hgvsp: ENSP00000371821.2:p.Ala350Asp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.926C>A
  hgvsp: ENSP00000429654.1:p.Ala309Asp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1103C>A
  hgvsp: ENSP00000385297.3:p.Ala368Asp
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19287
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala368Asp
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum

7-5267828-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267828
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267828
    reference: chr 7
allele count: 1
allele frequency: 8.533296924599789e-6
allele num: 117188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1107G>A
  hgvsp: ENST00000404704.3:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1442G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.930G>A
  hgvsp: ENST00000484262.1:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1053G>A
  hgvsp: ENST00000401525.3:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1489G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1107G>A
  hgvsp: ENST00000288828.4:c.1107G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1053G>A
  hgvsp: ENST00000382384.2:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19266
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu369Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-5267828-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267828
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267828
    reference: chr 7
allele count: 1
allele frequency: 8.533296924599789e-6
allele num: 117188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1053G>C
  hgvsp: ENST00000401525.3:c.1053G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1053G>C
  hgvsp: ENST00000382384.2:c.1053G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.930G>C
  hgvsp: ENST00000484262.1:c.930G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1107G>C
  hgvsp: ENST00000404704.3:c.1107G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1442G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1107G>C
  hgvsp: ENST00000288828.4:c.1107G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1489G>C
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19266
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6555
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu369Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-441328-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 441328
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 441328
    reference: chr 9
allele count: 10
allele frequency: 8.237096588194593e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107099
  ensembl transcript: ENST00000495184
  gene symbol: DOCK8
  hgvsc: ENST00000495184.1:n.7221A>C
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000371766
  ensembl transcript: ENST00000382329
  gene symbol: DOCK8
  hgvsc: ENST00000382329.1:c.3667A>C
  hgvsp: ENSP00000371766.1:p.Ile1223Leu
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000419438
  ensembl transcript: ENST00000469391
  gene symbol: DOCK8
  hgvsc: ENST00000469391.1:c.4966A>C
  hgvsp: ENSP00000419438.1:p.Ile1656Leu
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000408464
  ensembl transcript: ENST00000453981
  gene symbol: DOCK8
  hgvsc: ENST00000453981.1:c.5266A>C
  hgvsp: ENSP00000408464.1:p.Ile1756Leu
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000394888
  ensembl transcript: ENST00000432829
  gene symbol: DOCK8
  hgvsc: ENST00000432829.2:c.5062A>C
  hgvsp: ENSP00000394888.2:p.Ile1688Leu
  variant of: http://identifiers.org/hgnc/19191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9512
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17489
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile1756Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-441331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 441331
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 441331
    reference: chr 9
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000419438
  ensembl transcript: ENST00000469391
  gene symbol: DOCK8
  hgvsc: ENST00000469391.1:c.4969C>T
  hgvsp: ENSP00000419438.1:p.Pro1657Ser
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000408464
  ensembl transcript: ENST00000453981
  gene symbol: DOCK8
  hgvsc: ENST00000453981.1:c.5269C>T
  hgvsp: ENSP00000408464.1:p.Pro1757Ser
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107099
  ensembl transcript: ENST00000495184
  gene symbol: DOCK8
  hgvsc: ENST00000495184.1:n.7224C>T
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000394888
  ensembl transcript: ENST00000432829
  gene symbol: DOCK8
  hgvsc: ENST00000432829.2:c.5065C>T
  hgvsp: ENSP00000394888.2:p.Pro1689Ser
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000371766
  ensembl transcript: ENST00000382329
  gene symbol: DOCK8
  hgvsc: ENST00000382329.1:c.3670C>T
  hgvsp: ENSP00000371766.1:p.Pro1224Ser
  variant of: http://identifiers.org/hgnc/19191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1432
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4516
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7794
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro1757Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum

9-441333-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 441333
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 441333
    reference: chr 9
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107099
  ensembl transcript: ENST00000495184
  gene symbol: DOCK8
  hgvsc: ENST00000495184.1:n.7226C>T
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000371766
  ensembl transcript: ENST00000382329
  gene symbol: DOCK8
  hgvsc: ENST00000382329.1:c.3672C>T
  hgvsp: ENST00000382329.1:c.3672C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000419438
  ensembl transcript: ENST00000469391
  gene symbol: DOCK8
  hgvsc: ENST00000469391.1:c.4971C>T
  hgvsp: ENST00000469391.1:c.4971C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000408464
  ensembl transcript: ENST00000453981
  gene symbol: DOCK8
  hgvsc: ENST00000453981.1:c.5271C>T
  hgvsp: ENST00000453981.1:c.5271C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000394888
  ensembl transcript: ENST00000432829
  gene symbol: DOCK8
  hgvsc: ENST00000432829.2:c.5067C>T
  hgvsp: ENST00000432829.2:c.5067C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19191
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3857
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17473
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5350
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15891
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro1757Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

9-441343-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 441343
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 441343
    reference: chr 9
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000394888
  ensembl transcript: ENST00000432829
  gene symbol: DOCK8
  hgvsc: ENST00000432829.2:c.5077G>C
  hgvsp: ENSP00000394888.2:p.Ala1693Pro
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000419438
  ensembl transcript: ENST00000469391
  gene symbol: DOCK8
  hgvsc: ENST00000469391.1:c.4981G>C
  hgvsp: ENSP00000419438.1:p.Ala1661Pro
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107099
  ensembl transcript: ENST00000495184
  gene symbol: DOCK8
  hgvsc: ENST00000495184.1:n.7236G>C
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000371766
  ensembl transcript: ENST00000382329
  gene symbol: DOCK8
  hgvsc: ENST00000382329.1:c.3682G>C
  hgvsp: ENSP00000371766.1:p.Ala1228Pro
  variant of: http://identifiers.org/hgnc/19191
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107099
  ensembl protein: ENSP00000408464
  ensembl transcript: ENST00000453981
  gene symbol: DOCK8
  hgvsc: ENST00000453981.1:c.5281G>C
  hgvsp: ENSP00000408464.1:p.Ala1761Pro
  variant of: http://identifiers.org/hgnc/19191
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9507
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3437
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4513
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17472
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15900
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala1761Pro
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

7-5267841-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267841
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267841
    reference: chr 7
allele count: 1
allele frequency: 8.744163271016596e-6
allele num: 114362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.943C>T
  hgvsp: ENSP00000429654.1:p.Arg315Trp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1066C>T
  hgvsp: ENSP00000371821.2:p.Arg356Trp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1120C>T
  hgvsp: ENSP00000385297.3:p.Arg374Trp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1066C>T
  hgvsp: ENSP00000384945.3:p.Arg356Trp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1455C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1502C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1120C>T
  hgvsp: ENSP00000288828.4:p.Arg374Trp
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23725
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg374Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

7-5267842-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267842
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267842
    reference: chr 7
allele count: 6
allele frequency: 5.262511621379831e-5
allele num: 114014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121G>A
  hgvsp: ENSP00000385297.3:p.Arg374Gln
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067G>A
  hgvsp: ENSP00000371821.2:p.Arg356Gln
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944G>A
  hgvsp: ENSP00000429654.1:p.Arg315Gln
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121G>A
  hgvsp: ENSP00000288828.4:p.Arg374Gln
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067G>A
  hgvsp: ENSP00000384945.3:p.Arg356Gln
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23170
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18133
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5936
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg374Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

7-5267846-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267846
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267846
    reference: chr 7
allele count: 1
allele frequency: 8.914086038758445e-6
allele num: 112182
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+4A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+4A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+4A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+4A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+4A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+4A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+4A>G
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16929
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20529
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4850
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9416
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1273
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1121+4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

7-5267849-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267849
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267849
    reference: chr 7
allele count: 3368
allele frequency: 3.06226360197847e-2
allele num: 109984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+7C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+7C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+7C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+7C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+7C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+7C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+7C>G
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4567
  bin: 3.25e1
  variant carriers: 565
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 3.75e1
  variant carriers: 482
genotype depth: GenotypeDepth
  all individuals: 12021
  bin: 1.25e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 1.75e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 15114
  bin: 2.75e1
  variant carriers: 598
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.25e1
  variant carriers: 318
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4881
  bin: 7.5e0
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 17137
  bin: 2.25e1
  variant carriers: 516
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2937
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 12064
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 9.75e1
  variant carriers: 3250
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 7.75e1
  variant carriers: 9
hgvs: c.1121+7C>G
num of homozygotes: 55
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

7-5267850-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267850
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267850
    reference: chr 7
allele count: 1
allele frequency: 9.124753631651945e-6
allele num: 109592
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+8T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+8T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+8T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+8T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+8T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+8T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+8T>C
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12638
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1121+8T>C
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

7-5267855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267855
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267855
    reference: chr 7
allele count: 1
allele frequency: 9.256687957048968e-6
allele num: 108030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+13C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+13C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+13C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+13C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+13C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+13C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+13C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5763
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3747
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3460
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14781
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

7-5267856-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267856
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267856
    reference: chr 7
allele count: 1
allele frequency: 9.289018522302934e-6
allele num: 107654
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+14G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+14G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+14G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+14G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+14G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+14G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+14G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14064
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3615
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3937
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

7-5267856-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267856
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267856
    reference: chr 7
allele count: 7
allele frequency: 6.502312965612053e-5
allele num: 107654
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+14G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+14G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+14G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+14G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+14G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+14G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+14G>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14903
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14064
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4470
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3937
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

7-5267859-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267859
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267859
    reference: chr 7
allele count: 1
allele frequency: 9.381743127873159e-6
allele num: 106590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+17C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4565
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 925
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

7-5267860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267860
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267860
    reference: chr 7
allele count: 3
allele frequency: 2.850247971573527e-5
allele num: 105254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+18G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6184
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19522
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11497
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17627
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4820
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17907
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2638
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-5267861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267861
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267861
    reference: chr 7
allele count: 1
allele frequency: 9.480649993363545e-6
allele num: 105478
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+19C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+19C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+19C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+19C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+19C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+19C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+19C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6050
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5423
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17842
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/7-5267865-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267865
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267865
    reference: chr 7
allele count: 1
allele frequency: 9.528710003239762e-6
allele num: 104946
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+23A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+23A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+23A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+23A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+23A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+23A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+23A>C
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

7-5267866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267866
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267866
    reference: chr 7
allele count: 841
allele frequency: 8.062969780641202e-3
allele num: 104304
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+24C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7008
  bin: 7.5e0
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 3.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 1.75e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 21051
  bin: 1.25e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10029
  bin: 2.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10125
  bin: 2.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 4.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 5288
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18628
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3350
  bin: 6.75e1
  variant carriers: 9
num of homozygotes: 30
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

7-5267867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267867
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267867
    reference: chr 7
allele count: 1
allele frequency: 9.61372070218616e-6
allele num: 104018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+25G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+25G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+25G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+25G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+25G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+25G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+25G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21328
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2865
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

7-5267877-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267877
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267877
    reference: chr 7
allele count: 7
allele frequency: 7.047074457375266e-5
allele num: 99332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+35C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+35C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+35C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+35C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+35C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+35C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+35C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22993
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8502
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5420
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6437
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8471
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19561
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4993
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

7-5267878-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267878
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267878
    reference: chr 7
allele count: 6
allele frequency: 6.088527185273882e-5
allele num: 98546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+36G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+36G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+36G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+36G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+36G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+36G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+36G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13417
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 22820
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8805
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1217
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19237
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

7-5267879-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267879
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267879
    reference: chr 7
allele count: 530
allele frequency: 5.363286784051811e-3
allele num: 98820
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+37T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+37T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+37T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+37T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+37T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+37T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+37T>C
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22876
  bin: 1.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 13301
  bin: 1.75e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8881
  bin: 7.5e0
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5160
  bin: 2.25e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 2.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 9.75e1
  variant carriers: 499
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 7.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 4.25e1
  variant carriers: 2
num of homozygotes: 7
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP

7-5267882-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267882
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267882
    reference: chr 7
allele count: 1
allele frequency: 1.03538961711292e-5
allele num: 96582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+40T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+40T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+40T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+40T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+40T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+40T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+40T>C
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14501
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5680
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1834
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2996
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6606
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

7-5267885-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267885
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267885
    reference: chr 7
allele count: 3
allele frequency: 3.223588068426029e-5
allele num: 93064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+43C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+43C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+43C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+43C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+43C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+43C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+43C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14710
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5909
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6527
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8938
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-5267886-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267886
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267886
    reference: chr 7
allele count: 1
allele frequency: 1.071168430524016e-5
allele num: 93356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+44G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+44G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+44G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+44G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+44G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+44G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+44G>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10850
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5324
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17500
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4726
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2158
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6032
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3363
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

7-5267891-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267891
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267891
    reference: chr 7
allele count: 1
allele frequency: 1.136053803508134e-5
allele num: 88024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+49G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+49G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+49G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+49G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+49G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+49G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+49G>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12510
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14076
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6050
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3361
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

7-5267892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267892
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267892
    reference: chr 7
allele count: 1
allele frequency: 1.132631102050062e-5
allele num: 88290
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1503+50C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.944+50C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1067+50C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1067+50C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1121+50C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1456+50C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1121+50C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8935
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4920
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

7-5269189-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269189
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269189
    reference: chr 7
allele count: 1
allele frequency: 1.190419503833151e-5
allele num: 84004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-50A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-50A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.151A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-50A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-50A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-50A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-50A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-50A>G
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21165
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3580
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8916
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

7-5269190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269190
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269190
    reference: chr 7
allele count: 2
allele frequency: 2.377612401626287e-5
allele num: 84118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-49G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.152G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-49G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-49G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-49G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-49G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-49G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-49G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11256
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15985
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2208
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5986
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8916
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

7-5269191-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269191
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269191
    reference: chr 7
allele count: 5
allele frequency: 5.925574780753733e-5
allele num: 84380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.153G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-48G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15961
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21161
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7055
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1949
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6007
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

7-5269197-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269197
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269197
    reference: chr 7
allele count: 2
allele frequency: 2.356378717187426e-5
allele num: 84876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-42C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-42C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-42C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.159C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-42C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-42C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-42C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-42C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20993
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15904
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1287
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

7-5269198-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269198
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269198
    reference: chr 7
allele count: 1
allele frequency: 1.17680286198456e-5
allele num: 84976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-41C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-41C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-41C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-41C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-41C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-41C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.160C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-41C>G
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20906
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

7-5269198-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269198
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269198
    reference: chr 7
allele count: 1
allele frequency: 1.17680286198456e-5
allele num: 84976
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-41C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-41C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-41C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-41C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-41C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.160C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-41C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-41C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8828
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20906
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6758
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5958
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8783
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

7-5269200-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269200
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269200
    reference: chr 7
allele count: 5
allele frequency: 5.865377847640945e-5
allele num: 85246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-39G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-39G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-39G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-39G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-39G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.162G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-39G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-39G>C
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3008
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15966
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20681
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8943
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6619
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8729
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

7-5269201-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269201
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269201
    reference: chr 7
allele count: 1
allele frequency: 1.171344234643677e-5
allele num: 85372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-38T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-38T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-38T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-38T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-38T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.163T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-38T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-38T>C
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20593
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15624
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6543
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5891
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10072
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

7-5269205-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269205
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269205
    reference: chr 7
allele count: 1
allele frequency: 1.16198001394376e-5
allele num: 86060
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.167G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-34G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-34G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-34G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-34G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-34G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-34G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-34G>C
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20010
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11646
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-5269206-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269206
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269206
    reference: chr 7
allele count: 13
allele frequency: 1.506931886678722e-4
allele num: 86268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-33A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-33A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-33A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-33A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-33A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-33A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.168A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-33A>C
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19765
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6391
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15854
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11806
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8344
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16078
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5987
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

7-5269209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269209
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269209
    reference: chr 7
allele count: 2
allele frequency: 2.308455873865971e-5
allele num: 86638
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-30C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-30C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-30C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.171C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-30C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-30C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-30C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-30C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18983
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15775
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13466
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16228
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5527
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5622
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8065
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

7-5269210-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269210
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269210
    reference: chr 7
allele count: 1
allele frequency: 1.15130442791683e-5
allele num: 86858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-29G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-29G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-29G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-29G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-29G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-29G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.172G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-29G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-5269211-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269211
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269211
    reference: chr 7
allele count: 885
allele frequency: 1.006276436075863e-2
allele num: 87948
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-28C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.173C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-28C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-28C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-28C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-28C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-28C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-28C>G
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15452
  bin: 7.5e0
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 15588
  bin: 2.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 2.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 1.75e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 17728
  bin: 1.25e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 16052
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 16457
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1941
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 9.75e1
  variant carriers: 831
genotype quality: GenotypeQuality
  all individuals: 7476
  bin: 3.25e1
  variant carriers: 5
num of homozygotes: 25
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

7-5269222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269222
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269222
    reference: chr 7
allele count: 1
allele frequency: 1.089229696758452e-5
allele num: 91808
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.184C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-17C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-17C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12526
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5242
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23964
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

7-5269223-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269223
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269223
    reference: chr 7
allele count: 3
allele frequency: 3.245348334054522e-5
allele num: 92440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.185G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-16G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11899
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4130
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-5269224-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269224
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269224
    reference: chr 7
allele count: 2
allele frequency: 2.147397354406459e-5
allele num: 93136
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.186C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-15C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11501
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25009
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

7-5269235-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269235
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269235
    reference: chr 7
allele count: 1
allele frequency: 1.015578981577397e-5
allele num: 98466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.197C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-4C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30081
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3040
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1122-4C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-5269236-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269236
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269236
    reference: chr 7
allele count: 3
allele frequency: 3.029935765361774e-5
allele num: 99012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.198C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1122-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1504-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1068-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1122-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1457-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.945-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1068-3C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30119
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11662
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1122-3C>T
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-5269245-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269245
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269245
    reference: chr 7
allele count: 2
allele frequency: 1.925335489709082e-5
allele num: 103878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1463C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1128C>A
  hgvsp: ENSP00000385297.3:p.Asp376Glu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1074C>A
  hgvsp: ENSP00000384945.3:p.Asp358Glu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1074C>A
  hgvsp: ENSP00000371821.2:p.Asp358Glu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.207C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.951C>A
  hgvsp: ENSP00000429654.1:p.Asp317Glu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1128C>A
  hgvsp: ENSP00000288828.4:p.Asp376Glu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1510C>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9223
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35741
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp376Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ

7-5269245-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269245
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269245
    reference: chr 7
allele count: 18
allele frequency: 1.732801940738174e-4
allele num: 103878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1463C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1128C>T
  hgvsp: ENST00000404704.3:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1074C>T
  hgvsp: ENST00000382384.2:c.1074C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1128C>T
  hgvsp: ENST00000288828.4:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1074C>T
  hgvsp: ENST00000401525.3:c.1074C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.207C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1510C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.951C>T
  hgvsp: ENST00000484262.1:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7778
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33479
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2220
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2346
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp376Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

7-5269246-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269246
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269246
    reference: chr 7
allele count: 13
allele frequency: 1.24363831171316e-4
allele num: 104532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1075G>A
  hgvsp: ENSP00000384945.3:p.Gly359Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1075G>A
  hgvsp: ENSP00000371821.2:p.Gly359Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1129G>A
  hgvsp: ENSP00000385297.3:p.Gly377Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1129G>A
  hgvsp: ENSP00000288828.4:p.Gly377Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1464G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1511G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.952G>A
  hgvsp: ENSP00000429654.1:p.Gly318Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.208G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7920
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33807
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly377Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

7-5269250-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269250
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269250
    reference: chr 7
allele count: 1
allele frequency: 9.361718062498831e-6
allele num: 106818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.956G>C
  hgvsp: ENSP00000429654.1:p.Ser319Thr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1468G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1133G>C
  hgvsp: ENSP00000385297.3:p.Ser378Thr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1079G>C
  hgvsp: ENSP00000371821.2:p.Ser360Thr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1079G>C
  hgvsp: ENSP00000384945.3:p.Ser360Thr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1515G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.212G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1133G>C
  hgvsp: ENSP00000288828.4:p.Ser378Thr
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37186
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser378Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-5269250-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269250
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269250
    reference: chr 7
allele count: 1
allele frequency: 9.361718062498831e-6
allele num: 106818
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1133G>T
  hgvsp: ENSP00000288828.4:p.Ser378Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1079G>T
  hgvsp: ENSP00000371821.2:p.Ser360Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1133G>T
  hgvsp: ENSP00000385297.3:p.Ser378Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1079G>T
  hgvsp: ENSP00000384945.3:p.Ser360Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.956G>T
  hgvsp: ENSP00000429654.1:p.Ser319Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1515G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.212G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1468G>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8652
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser378Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

7-5269259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269259
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269259
    reference: chr 7
allele count: 2
allele frequency: 1.825650387950707e-5
allele num: 109550
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1477C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.965C>T
  hgvsp: ENSP00000429654.1:p.Thr322Met
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1088C>T
  hgvsp: ENSP00000384945.3:p.Thr363Met
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1088C>T
  hgvsp: ENSP00000371821.2:p.Thr363Met
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1142C>T
  hgvsp: ENSP00000288828.4:p.Thr381Met
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1524C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.221C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1142C>T
  hgvsp: ENSP00000385297.3:p.Thr381Met
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9727
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6471
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr381Met
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

7-5269260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269260
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269260
    reference: chr 7
allele count: 3
allele frequency: 2.728364072901888e-5
allele num: 109956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1089G>A
  hgvsp: ENST00000401525.3:c.1089G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1143G>A
  hgvsp: ENST00000288828.4:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1478G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.222G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1143G>A
  hgvsp: ENST00000404704.3:c.1143G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1525G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1089G>A
  hgvsp: ENST00000382384.2:c.1089G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.966G>A
  hgvsp: ENST00000484262.1:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6275
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr381Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-5269263-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269263
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269263
    reference: chr 7
allele count: 1
allele frequency: 9.014856483484784e-6
allele num: 110928
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1146C>G
  hgvsp: ENST00000404704.3:c.1146C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1481C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1092C>G
  hgvsp: ENST00000401525.3:c.1092C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1528C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1146C>G
  hgvsp: ENST00000288828.4:c.1146C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.225C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1092C>G
  hgvsp: ENST00000382384.2:c.1092C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.969C>G
  hgvsp: ENST00000484262.1:c.969C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr382Thr
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

7-5269263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269263
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269263
    reference: chr 7
allele count: 2
allele frequency: 1.802971296696957e-5
allele num: 110928
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1092C>T
  hgvsp: ENST00000401525.3:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1481C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.225C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1146C>T
  hgvsp: ENST00000404704.3:c.1146C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.969C>T
  hgvsp: ENST00000484262.1:c.969C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1092C>T
  hgvsp: ENST00000382384.2:c.1092C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1528C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1146C>T
  hgvsp: ENST00000288828.4:c.1146C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5095
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5781
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr382Thr
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

7-5269265-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269265
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269265
    reference: chr 7
allele count: 1
allele frequency: 8.964750600638291e-6
allele num: 111548
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1148A>T
  hgvsp: ENSP00000288828.4:p.Asn383Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1148A>T
  hgvsp: ENSP00000385297.3:p.Asn383Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1530A>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1483A>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1094A>T
  hgvsp: ENSP00000371821.2:p.Asn365Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.971A>T
  hgvsp: ENSP00000429654.1:p.Asn324Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.227A>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1094A>T
  hgvsp: ENSP00000384945.3:p.Asn365Ile
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41194
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn383Ile
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/7-5269272-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269272
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269272
    reference: chr 7
allele count: 1
allele frequency: 8.855827134254339e-6
allele num: 112920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1537C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.978C>A
  hgvsp: ENST00000484262.1:c.978C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1155C>A
  hgvsp: ENST00000404704.3:c.1155C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1101C>A
  hgvsp: ENST00000382384.2:c.1101C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1155C>A
  hgvsp: ENST00000288828.4:c.1155C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1101C>A
  hgvsp: ENST00000401525.3:c.1101C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.234C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1490C>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10785
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile385Ile
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

7-5269276-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269276
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269276
    reference: chr 7
allele count: 5
allele frequency: 4.399084990322013e-5
allele num: 113660
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1159G>T
  hgvsp: ENSP00000288828.4:p.Asp387Tyr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1541G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1105G>T
  hgvsp: ENSP00000384945.3:p.Asp369Tyr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1159G>T
  hgvsp: ENSP00000385297.3:p.Asp387Tyr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1105G>T
  hgvsp: ENSP00000371821.2:p.Asp369Tyr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1494G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.982G>T
  hgvsp: ENSP00000429654.1:p.Asp328Tyr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.238G>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37490
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42111
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Asp387Tyr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS

http://identifiers.org/exac.variant/7-5269284-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269284
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269284
    reference: chr 7
allele count: 26
allele frequency: 2.265202997037812e-4
allele num: 114780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1502C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.246C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.990C>A
  hgvsp: ENST00000484262.1:c.990C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1113C>A
  hgvsp: ENST00000401525.3:c.1113C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1167C>A
  hgvsp: ENST00000288828.4:c.1167C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1167C>A
  hgvsp: ENST00000404704.3:c.1167C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1549C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1113C>A
  hgvsp: ENST00000382384.2:c.1113C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12191
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3227
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36980
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 963
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1053
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 9.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Ala389Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

7-5269290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269290
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269290
    reference: chr 7
allele count: 2
allele frequency: 1.72839932938106e-5
allele num: 115714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.996C>T
  hgvsp: ENST00000484262.1:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1119C>T
  hgvsp: ENST00000382384.2:c.1119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1173C>T
  hgvsp: ENST00000288828.4:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1173C>T
  hgvsp: ENST00000404704.3:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1508C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1555C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.252C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1119C>T
  hgvsp: ENST00000401525.3:c.1119C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37300
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1020
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
hgvs: p.His391His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

7-5269291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269291
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269291
    reference: chr 7
allele count: 98
allele frequency: 8.450169865659544e-4
allele num: 115974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1120G>A
  hgvsp: ENSP00000371821.2:p.Asp374Asn
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.997G>A
  hgvsp: ENSP00000429654.1:p.Asp333Asn
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.253G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1120G>A
  hgvsp: ENSP00000384945.3:p.Asp374Asn
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1174G>A
  hgvsp: ENSP00000288828.4:p.Asp392Asn
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1174G>A
  hgvsp: ENSP00000385297.3:p.Asp392Asn
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1556G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1509G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12965
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 37319
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp392Asn
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: QD

7-5269291-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269291
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269291
    reference: chr 7
allele count: 2
allele frequency: 1.724524462379499e-5
allele num: 115974
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1174G>T
  hgvsp: ENSP00000288828.4:p.Asp392Tyr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1120G>T
  hgvsp: ENSP00000371821.2:p.Asp374Tyr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.253G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.997G>T
  hgvsp: ENSP00000429654.1:p.Asp333Tyr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1174G>T
  hgvsp: ENSP00000385297.3:p.Asp392Tyr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1120G>T
  hgvsp: ENSP00000384945.3:p.Asp374Tyr
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1509G>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1556G>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12965
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4790
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp392Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

7-5269299-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269299
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269299
    reference: chr 7
allele count: 3
allele frequency: 2.554756957454781e-5
allele num: 117428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1182C>G
  hgvsp: ENST00000404704.3:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1128C>G
  hgvsp: ENST00000401525.3:c.1128C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1564C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.1005C>G
  hgvsp: ENST00000484262.1:c.1005C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1517C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1182C>G
  hgvsp: ENST00000288828.4:c.1182C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.261C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1128C>G
  hgvsp: ENST00000382384.2:c.1128C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2803
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37865
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45702
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro394Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

7-5269301-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269301
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269301
    reference: chr 7
allele count: 2
allele frequency: 1.698081168279844e-5
allele num: 117780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1130T>C
  hgvsp: ENSP00000371821.2:p.Leu377Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.1007T>C
  hgvsp: ENSP00000429654.1:p.Leu336Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1519T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1566T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1130T>C
  hgvsp: ENSP00000384945.3:p.Leu377Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1184T>C
  hgvsp: ENSP00000288828.4:p.Leu395Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.263T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1184T>C
  hgvsp: ENSP00000385297.3:p.Leu395Ser
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38178
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2760
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu395Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

7-5269311-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269311
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269311
    reference: chr 7
allele count: 1
allele frequency: 8.416941620092923e-6
allele num: 118808
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1576G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1140G>A
  hgvsp: ENST00000401525.3:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1194G>A
  hgvsp: ENST00000404704.3:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1194G>A
  hgvsp: ENST00000288828.4:c.1194G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1140G>A
  hgvsp: ENST00000382384.2:c.1140G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.1017G>A
  hgvsp: ENST00000484262.1:c.1017G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.273G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1529G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47618
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln398Gln
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-5269313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5269313
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5269313
    reference: chr 7
allele count: 1
allele frequency: 8.409438754057554e-6
allele num: 118914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1578C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000479690
  gene symbol: WIPI2
  hgvsc: ENST00000479690.1:n.275C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1196C>T
  hgvsp: ENSP00000288828.4:p.Thr399Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.1142C>T
  hgvsp: ENSP00000384945.3:p.Thr381Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1196C>T
  hgvsp: ENSP00000385297.3:p.Thr399Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.1019C>T
  hgvsp: ENSP00000429654.1:p.Thr340Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1531C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.1142C>T
  hgvsp: ENSP00000371821.2:p.Thr381Ile
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47717
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr399Ile
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

7-5269314-A-G
type: Variant
location: Region
allele count: 858
allele frequency: 7.207419105540808e-3
allele num: 119044
alternate allele: G
canonical: true
consequence: synonymous
filter: PASS
hgvs: p.Thr399Thr
num of homozygotes: 31
reference allele: A

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17491
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15873
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.0e-3

DP
type: SiteQuality
SIO_000300: 2.352039e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.298e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.56e-1

FS
type: SiteQuality
SIO_000300: 8.55e-1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531440472908818e-5
allele num: 65298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.509251e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

VQSLOD
type: SiteQuality
SIO_000300: -2.962e0

GenotypeQuality
all individuals: 6823
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43946
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 208
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16795141322121e-4
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.759943681802182e-4
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538414202639919e-5
allele num: 65002
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.444091409018697e-4
allele num: 16366
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.172e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

FS
type: SiteQuality
SIO_000300: 3.412e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 1.497155e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.65e-1

GenotypeQuality
all individuals: 1341
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 555
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2941
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548083472660846e-5
allele num: 64596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.112e0

FS
type: SiteQuality
SIO_000300: 1.622e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.051e1

MQ
type: SiteQuality
SIO_000300: 5.915e1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

DP
type: SiteQuality
SIO_000300: 1.483266e6

GenotypeQuality
all individuals: 243
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 216
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6626
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549282682118179e-5
allele num: 64546
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

QD
type: SiteQuality
SIO_000300: 7.28e0

VQSLOD
type: SiteQuality
SIO_000300: -2.953e0

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 1.8103e1

DP
type: SiteQuality
SIO_000300: 1.482307e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.518e0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3552
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1297
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.893632159373888e-5
allele num: 11244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

DP
type: SiteQuality
SIO_000300: 1.473163e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.137e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 42537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.164468006411046e-5
allele num: 16222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.137e1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.42e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.27e-1

DP
type: SiteQuality
SIO_000300: 1.473163e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.05e-1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4516
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7792
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.498486528606108e-4
allele num: 66734
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.35214e6

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

QD
type: SiteQuality
SIO_000300: 1.422e1

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

FS
type: SiteQuality
SIO_000300: 5.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.590000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3438
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155802126675913e-4
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.53e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

QD
type: SiteQuality
SIO_000300: 1.307e1

FS
type: SiteQuality
SIO_000300: 5.87e0

DP
type: SiteQuality
SIO_000300: 2.351614e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4517
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.255e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.404e0

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.351495e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

GenotypeQuality
all individuals: 7792
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3773
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.351347e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.629e0

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.883e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.14e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6636
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 637
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1331
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.592407401509602e-5
allele num: 62798
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10888
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.885e0

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

DP
type: SiteQuality
SIO_000300: 1.413657e6

FS
type: SiteQuality
SIO_000300: 2.126e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.398e0

QD
type: SiteQuality
SIO_000300: 4.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7070
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1175
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.790801660811242e-5
allele num: 62620
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.045150501672241e-4
allele num: 9568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8248
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.253604111821487e-4
allele num: 15954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

DP
type: SiteQuality
SIO_000300: 1.406127e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.8e-2

FS
type: SiteQuality
SIO_000300: 4.271e0

QD
type: SiteQuality
SIO_000300: 1.366e1

VQSLOD
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
all individuals: 160
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33173
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5765
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.061796559779146e-4
allele num: 9418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15822
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.181e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.323e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

DP
type: SiteQuality
SIO_000300: 1.353347e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.077e0

FS
type: SiteQuality
SIO_000300: 6.628e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 834
bin: 5.25e1
variant carriers: 9

GenotypeQuality
all individuals: 2761
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 603
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 413
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 763
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 990
bin: 7.25e1
variant carriers: 10

GenotypeQuality
all individuals: 4669
bin: 6.75e1
variant carriers: 12

GenotypeQuality
all individuals: 26706
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 552
bin: 4.75e1
variant carriers: 9

GenotypeQuality
all individuals: 134
bin: 8.75e1
variant carriers: 4

African
type: Population
allele count: 410
allele frequency: 4.421915444348577e-2
allele num: 9272
num of homozygotes: 8

European (Finnish)
type: Population
allele count: 62
allele frequency: 1.089248067463106e-2
allele num: 5692
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2405
allele frequency: 3.984690834382663e-2
allele num: 60356
num of homozygotes: 44

Other
type: Population
allele count: 25
allele frequency: 3.101736972704715e-2
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7838
num of homozygotes: 0

Latino
type: Population
allele count: 200
allele frequency: 1.937984496124031e-2
allele num: 10320
num of homozygotes: 0

South Asian
type: Population
allele count: 266
allele frequency: 1.694267515923567e-2
allele num: 15700
num of homozygotes: 3

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

DP
type: SiteQuality
SIO_000300: 1.288541e6

VQSLOD
type: SiteQuality
SIO_000300: 6.16e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.291e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.47e1

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1566
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12835
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2897
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28810
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5011
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.664059639897494e-5
allele num: 60094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.252901e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 1.935e0

MQRankSum
type: SiteQuality
SIO_000300: -1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.595e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.404e0

QD
type: SiteQuality
SIO_000300: 7.76e0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1817
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.689874273354063e-5
allele num: 59176
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

QD
type: SiteQuality
SIO_000300: 1.261e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.354e0

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

FS
type: SiteQuality
SIO_000300: 3.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

DP
type: SiteQuality
SIO_000300: 1.204641e6

GenotypeQuality
all individuals: 232
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.10692937790569e-4
allele num: 9034
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15548
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

FS
type: SiteQuality
SIO_000300: 6.645e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

QD
type: SiteQuality
SIO_000300: 1.331e1

DP
type: SiteQuality
SIO_000300: 1.190744e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.615e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

GenotypeQuality
all individuals: 420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3615
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15260
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 9.75e1
variant carriers: 7

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.188011269135467e-4
allele num: 58922
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15548
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

FS
type: SiteQuality
SIO_000300: 6.645e0

DP
type: SiteQuality
SIO_000300: 1.190744e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.615e0

QD
type: SiteQuality
SIO_000300: 1.331e1

GenotypeQuality
all individuals: 231
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22432
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16677
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4272
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.71485406591899e-5
allele num: 58314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8946
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15484
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 3.98e0

VQSLOD
type: SiteQuality
SIO_000300: -2.919e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.281e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.149229e6

GenotypeQuality
all individuals: 1355
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5425
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 839
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.478623856402407e-5
allele num: 57494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7508
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.486766995329527e-5
allele num: 15416
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 1.105527e6

QD
type: SiteQuality
SIO_000300: 1.12e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

FS
type: SiteQuality
SIO_000300: 1.465e0

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

GenotypeQuality
all individuals: 1122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3634
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.735207357279195e-5
allele num: 57630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8824
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7516
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.277e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.102506e6

MQ
type: SiteQuality
SIO_000300: 5.826e1

MQRankSum
type: SiteQuality
SIO_000300: 8.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

QD
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.504e0

GenotypeQuality
all individuals: 18450
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5058
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3517
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.743192831991075e-5
allele num: 57366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8750
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.532e0

QD
type: SiteQuality
SIO_000300: 5.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

DP
type: SiteQuality
SIO_000300: 1.08382e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

FS
type: SiteQuality
SIO_000300: 4.523e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.0e-2

GenotypeQuality
all individuals: 775
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 542
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 6070
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2880
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1191
bin: 9.75e1
variant carriers: 754

GenotypeQuality
all individuals: 16557
bin: 6.25e1
variant carriers: 7

GenotypeQuality
all individuals: 404
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 699
bin: 7.75e1
variant carriers: 10

GenotypeQuality
all individuals: 146
bin: 9.25e1
variant carriers: 4

African
type: Population
allele count: 775
allele frequency: 8.945060018467221e-2
allele num: 8664
num of homozygotes: 30

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 4.032682259704738e-4
allele num: 57034
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 5.235602094240838e-3
allele num: 764
num of homozygotes: 0

Latino
type: Population
allele count: 36
allele frequency: 3.725936659076796e-3
allele num: 9662
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.347708894878706e-4
allele num: 7420
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.303441084462982e-4
allele num: 15344
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.468e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

DP
type: SiteQuality
SIO_000300: 1.067705e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.83e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
all individuals: 141
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17218
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5365
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56968
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.036914143508917e-4
allele num: 9644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7390
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.361e0

QD
type: SiteQuality
SIO_000300: 2.899e1

DP
type: SiteQuality
SIO_000300: 1.0613e6

FS
type: SiteQuality
SIO_000300: 2.764e0

MQ
type: SiteQuality
SIO_000300: 5.906e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.197e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

GenotypeQuality
all individuals: 1089
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 942
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 139
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 7.104290991759022e-4
allele num: 7038
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.264222503160556e-4
allele num: 7910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.840807009793093e-5
allele num: 54324
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15044
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.5e0

QD
type: SiteQuality
SIO_000300: 1.395e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

DP
type: SiteQuality
SIO_000300: 9.4874e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

GenotypeQuality
all individuals: 8649
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6510
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 140
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.109631602308034e-4
allele num: 9012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5108
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.711539175295995e-5
allele num: 53886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.998933901918977e-4
allele num: 15008
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.37594e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

QD
type: SiteQuality
SIO_000300: 1.126e1

GenotypeQuality
all individuals: 1880
bin: 6.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2600
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 6480
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 19398
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8520
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 509
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 363
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 8578
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 8.25e1
variant carriers: 13

Other
type: Population
allele count: 5
allele frequency: 6.983240223463687e-3
allele num: 716
num of homozygotes: 0

South Asian
type: Population
allele count: 19
allele frequency: 1.263129902938439e-3
allele num: 15042
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 7.719453021614468e-4
allele num: 9068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 97
allele frequency: 1.794900262758595e-3
allele num: 54042
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.285714285714286e-3
allele num: 7000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 273
allele frequency: 5.348746081504702e-2
allele num: 5104
num of homozygotes: 6

African
type: Population
allele count: 120
allele frequency: 1.529051987767584e-2
allele num: 7848
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.932e0

QD
type: SiteQuality
SIO_000300: 1.292e1

VQSLOD
type: SiteQuality
SIO_000300: 5.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.35824e5

GenotypeQuality
all individuals: 9017
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18693
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.714113065664025e-5
allele num: 14894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6760
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.376e0

DP
type: SiteQuality
SIO_000300: 9.12201e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.83e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.747e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

QD
type: SiteQuality
SIO_000300: 8.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
all individuals: 2061
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17511
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3407
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 810
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.963633507442171e-5
allele num: 50926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.372872048325096e-4
allele num: 14568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4714
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 8.98379e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.06e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.694e1

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: -2.231e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.32e-1

GenotypeQuality
all individuals: 452
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6616
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9029
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.957943376277558e-5
allele num: 51074
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 8.93659e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.09e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.429e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.92e-1

GenotypeQuality
all individuals: 5165
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8909
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6264
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14390
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3273
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1841
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6882
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48252
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.306506401881369e-4
allele num: 7654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.62e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.74978e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 1.002e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

GenotypeQuality
all individuals: 14618
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2686
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6283
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1771
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3259
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6044
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4468
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.027406886858749e-5
allele num: 14230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.036e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

DP
type: SiteQuality
SIO_000300: 8.74883e5

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.341e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1649
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5134
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7061
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2356
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.13656952397231e-5
allele num: 46804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7120
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.485e0

QD
type: SiteQuality
SIO_000300: 7.12e0

DP
type: SiteQuality
SIO_000300: 8.36597e5

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.226e0

VQSLOD
type: SiteQuality
SIO_000300: -1.251e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 7050
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13231
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5316
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2883
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4054
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3458
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1400
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7138
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.692514808831449e-4
allele num: 7428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3730
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.652e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.42e0

QD
type: SiteQuality
SIO_000300: 1.085e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 8.37804e5

GenotypeQuality
all individuals: 3057
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13677
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3986
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8913
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.063603488619443e-4
allele num: 47010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.309e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.39664e5

VQSLOD
type: SiteQuality
SIO_000300: 8.84e-1

GenotypeQuality
all individuals: 1074
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15026
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6837
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8811
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5856
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.586294416243655e-4
allele num: 12608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3786
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.53e-1

QD
type: SiteQuality
SIO_000300: 1.141e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.58546e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

GenotypeQuality
all individuals: 8640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6758
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15193
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5958
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.114254302507506e-5
allele num: 47298
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

FS
type: SiteQuality
SIO_000300: 6.734e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.239e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

QD
type: SiteQuality
SIO_000300: 1.375e1

DP
type: SiteQuality
SIO_000300: 8.62167e5

GenotypeQuality
all individuals: 1549
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3017
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15193
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2635
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.391207568169171e-4
allele num: 7188
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.375e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.239e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

DP
type: SiteQuality
SIO_000300: 8.62167e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.41e-1

FS
type: SiteQuality
SIO_000300: 6.734e0

VQSLOD
type: SiteQuality
SIO_000300: 5.43e-1

GenotypeQuality
all individuals: 5927
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1450
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15445
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9443
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1556
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.943839722353684e-4
allele num: 12678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7216
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.172e1

MQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.69492e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

GenotypeQuality
all individuals: 821
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1561
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2405
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 136
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7224
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.886435331230284e-5
allele num: 12680
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.977e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.031e0

DP
type: SiteQuality
SIO_000300: 8.73652e5

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.17e-1

GenotypeQuality
all individuals: 664
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 191
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5805
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8495
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.086637175527919e-5
allele num: 47924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.447e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.626e1

DP
type: SiteQuality
SIO_000300: 8.90344e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
all individuals: 1202
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5760
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12557
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 116
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1958
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.839448102853559e-5
allele num: 12756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.640689089417555e-3
allele num: 7314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.18e-1

DP
type: SiteQuality
SIO_000300: 8.96483e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

FS
type: SiteQuality
SIO_000300: 1.671e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.79e0

QD
type: SiteQuality
SIO_000300: 1.344e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

GenotypeQuality
all individuals: 14071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.071165237562653e-5
allele num: 48282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.360174102285093e-4
allele num: 7352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7690
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.13598e5

FS
type: SiteQuality
SIO_000300: 1.153e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 5.48e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.643e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.91e-1

GenotypeQuality
all individuals: 5521
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1886
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7764
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7382
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.066201082689367e-5
allele num: 48398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3934
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

VQSLOD
type: SiteQuality
SIO_000300: 6.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

DP
type: SiteQuality
SIO_000300: 9.27797e5

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 7.6e0

QD
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e0

GenotypeQuality
all individuals: 468
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1284
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 4796
bin: 3.75e1
variant carriers: 5

GenotypeQuality
all individuals: 873
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 284
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 485
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 133
bin: 8.75e1
variant carriers: 19

GenotypeQuality
all individuals: 143
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 1492
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 527
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 5351
bin: 2.75e1
variant carriers: 2

African
type: Population
allele count: 828
allele frequency: 1.070320579110652e-1
allele num: 7736
num of homozygotes: 25

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6068
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.765180928715639e-5
allele num: 12878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 3.891528756349336e-4
allele num: 48824
num of homozygotes: 0

Latino
type: Population
allele count: 34
allele frequency: 4.362329997433924e-3
allele num: 7794
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 4.587155963302753e-3
allele num: 654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.03e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

QD
type: SiteQuality
SIO_000300: 1.495e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 9.4517e5

GenotypeQuality
all individuals: 339
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4319
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 815
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14876
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 7.544892108042855e-5
allele num: 13254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50918
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4284
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.074e0

DP
type: SiteQuality
SIO_000300: 1.035361e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 7.81e0

VQSLOD
type: SiteQuality
SIO_000300: -1.403e-1

GenotypeQuality
all individuals: 803
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4946
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14638
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2610
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.900764549851771e-5
allele num: 51272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.318034306907742e-4
allele num: 4314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

QD
type: SiteQuality
SIO_000300: 7.58e0

FS
type: SiteQuality
SIO_000300: 1.118e0

VQSLOD
type: SiteQuality
SIO_000300: -4.009e-1

DP
type: SiteQuality
SIO_000300: 1.049197e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

GenotypeQuality
all individuals: 827
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25747
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4784
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4033
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51622
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.493205913095416e-4
allele num: 13394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4352
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.77e-1

FS
type: SiteQuality
SIO_000300: 1.571e0

DP
type: SiteQuality
SIO_000300: 1.057274e6

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.078e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeQuality
all individuals: 141
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11919
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1504
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7064
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8962
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.226477814713109e-5
allele num: 13838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

QD
type: SiteQuality
SIO_000300: 1.483e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

DP
type: SiteQuality
SIO_000300: 1.140201e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.854e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

GenotypeQuality
all individuals: 3254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3122
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1337
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13872
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.175917215428034e-4
allele num: 8504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.636892638929299e-5
allele num: 54992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.073e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.28e-1

DP
type: SiteQuality
SIO_000300: 1.14816e6

VQSLOD
type: SiteQuality
SIO_000300: 8.53e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.97e-1

GenotypeQuality
all individuals: 559
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.470655606844133e-5
allele num: 57626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 5.76e-1

DP
type: SiteQuality
SIO_000300: 1.216224e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

QD
type: SiteQuality
SIO_000300: 1.213e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 803
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9223
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3562
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35741
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 9.75e1
variant carriers: 18

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.908860583764273e-4
allele num: 57626
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.788866259334691e-4
allele num: 8838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14368
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.302083333333333e-3
allele num: 768
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

DP
type: SiteQuality
SIO_000300: 1.216224e6

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

QD
type: SiteQuality
SIO_000300: 1.213e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.95e-1

GenotypeQuality
all individuals: 842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 797
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 36224
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8936
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5140
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.637826431020839e-4
allele num: 7582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.895897966218545e-4
allele num: 58020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14422
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.27e-1

FS
type: SiteQuality
SIO_000300: 5.48e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.223622e6

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7851
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 826
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.687649778917879e-5
allele num: 59254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14630
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.233e1

FS
type: SiteQuality
SIO_000300: 1.88e0

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

DP
type: SiteQuality
SIO_000300: 1.250417e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.6e-2

GenotypeQuality
all individuals: 826
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 417
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7851
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37186
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.835269993164729e-5
allele num: 14630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.88e0

DP
type: SiteQuality
SIO_000300: 1.250417e6

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

QD
type: SiteQuality
SIO_000300: 1.233e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 630
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4115
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1085
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.64538633671186e-5
allele num: 60776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.087192868014786e-4
allele num: 9198
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

FS
type: SiteQuality
SIO_000300: 3.646e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.023e0

QD
type: SiteQuality
SIO_000300: 1.392e1

DP
type: SiteQuality
SIO_000300: 1.288729e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

GenotypeQuality
all individuals: 87
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1069
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4173
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.246050638389959e-4
allele num: 9242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14942
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.047e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

FS
type: SiteQuality
SIO_000300: 5.11e0

DP
type: SiteQuality
SIO_000300: 1.294448e6

VQSLOD
type: SiteQuality
SIO_000300: -2.192e0

MQRankSum
type: SiteQuality
SIO_000300: 7.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-1

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40625
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5781
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.068832834544677e-4
allele num: 9356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61470
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

DP
type: SiteQuality
SIO_000300: 1.307617e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.019e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

FS
type: SiteQuality
SIO_000300: 3.091e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.214e1

GenotypeQuality
all individuals: 818
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1372
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1410
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 909
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9356
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.476473501733531e-4
allele num: 8076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15038
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61470
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.019e0

DP
type: SiteQuality
SIO_000300: 1.307617e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.214e1

FS
type: SiteQuality
SIO_000300: 3.091e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

GenotypeQuality
all individuals: 757
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.475080538184574e-5
allele num: 10554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.085e0

MQ
type: SiteQuality
SIO_000300: 5.92e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.71e0

VQSLOD
type: SiteQuality
SIO_000300: -1.268e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.793e0

DP
type: SiteQuality
SIO_000300: 1.312995e6

QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeQuality
all individuals: 4790
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 921
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.568575932737782e-5
allele num: 15224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5866
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

DP
type: SiteQuality
SIO_000300: 1.332383e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.667e0

MQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.54e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 526
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1005
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.942811755361398e-5
allele num: 62950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10778
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.185e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

DP
type: SiteQuality
SIO_000300: 1.342122e6

FS
type: SiteQuality
SIO_000300: 5.969e0

GenotypeQuality
all individuals: 1460
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3844
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 744
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41704
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4664
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15462
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.673246966892865e-3
allele num: 9726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63528
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 1.36182e6

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.491e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 1.766e0

QD
type: SiteQuality
SIO_000300: 1.299e1

GenotypeQuality
all individuals: 593
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43231
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1063
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6082
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.112447603426281e-5
allele num: 10974
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.191327138432213e-4
allele num: 8394
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.21e0

MQRankSum
type: SiteQuality
SIO_000300: 5.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

FS
type: SiteQuality
SIO_000300: 4.341e0

DP
type: SiteQuality
SIO_000300: 1.377915e6

GenotypeQuality
all individuals: 829
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.75e1
variant carriers: 96

GenotypeQuality
all individuals: 43637
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.676102001371656e-5
allele num: 64156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 92
allele frequency: 9.347693558219874e-3
allele num: 9842
num of homozygotes: 1

Latino
type: Population
allele count: 3
allele frequency: 2.726776949645519e-4
allele num: 11002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

DP
type: SiteQuality
SIO_000300: 1.385263e6

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

FS
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.348e1

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43637
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.117401334247771e-5
allele num: 64156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11002
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.348e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.61e-2

DP
type: SiteQuality
SIO_000300: 1.385263e6

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

GenotypeQuality
all individuals: 611
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5074
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.080524921446614e-5
allele num: 64924
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.610305958132045e-4
allele num: 6210
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.61e-1

DP
type: SiteQuality
SIO_000300: 1.4091e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

GenotypeQuality
all individuals: 460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46567
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1030
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.071724773460298e-5
allele num: 65110
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 9.55e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.413521e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.56e-1

GenotypeQuality
all individuals: 375
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16000
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524576167825345e-5
allele num: 65592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.313e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.936e0

DP
type: SiteQuality
SIO_000300: 1.433114e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: -2.659e0

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.869e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 1062
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5254
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16022
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10122
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6358
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.896e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.007e1

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.434e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.626e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 1.435386e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.573e0