7-94791278-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791278
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791278
    reference: chr 7
allele count: 1
allele frequency: 9.492529379378429e-6
allele num: 105346
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1749C>T
  hgvsp: ENST00000433360.1:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1749C>T
  hgvsp: ENST00000433881.1:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5015G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1749C>T
  hgvsp: ENST00000340694.4:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1749C>T
  hgvsp: ENST00000456331.2:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1749C>T
  hgvsp: ENST00000424654.1:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1749C>T
  hgvsp: ENST00000289495.5:c.1749C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn583Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

7-94791279-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791279
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791279
    reference: chr 7
allele count: 1
allele frequency: 9.520907913778659e-6
allele num: 105032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1750G>A
  hgvsp: ENSP00000398870.1:p.Val584Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1750G>A
  hgvsp: ENSP00000405514.1:p.Val584Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5016C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1750G>A
  hgvsp: ENSP00000344524.4:p.Val584Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1750G>A
  hgvsp: ENSP00000289495.5:p.Val584Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1750G>A
  hgvsp: ENSP00000411342.1:p.Val584Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1750G>A
  hgvsp: ENSP00000402893.2:p.Val584Ile
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33910
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11937
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val584Ile
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-94791287-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791287
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791287
    reference: chr 7
allele count: 2
allele frequency: 1.973593321360201e-5
allele num: 101338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+4A>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+4A>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+4A>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5024T>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+4A>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+4A>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+4A>C
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9790
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6523
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15675
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1451
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1754+4A>C
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

7-94791291-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791291
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791291
    reference: chr 7
allele count: 2
allele frequency: 2.022981064897233e-5
allele num: 98864
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+8C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5028G>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+8C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+8C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+8C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+8C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+8C>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26067
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17746
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1754+8C>G
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-94791291-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791291
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791291
    reference: chr 7
allele count: 2
allele frequency: 2.022981064897233e-5
allele num: 98864
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5028G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+8C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+8C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+8C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+8C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+8C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+8C>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29528
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1754+8C>T
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

7-94791291-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791291
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791290
    reference: chr 7
allele count: 3
allele frequency: 3.034471597345849e-5
allele num: 98864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+9delG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5029delC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+9delG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+9delG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+9delG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+9delG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+9delG
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17746
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: CG
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

7-94791292-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791292
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791292
    reference: chr 7
allele count: 4
allele frequency: 4.076557754631988e-5
allele num: 98122
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+9G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5029C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+9G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+9G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+9G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+9G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+9G>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25120
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18409
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum

7-94791292-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791292
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791292
    reference: chr 7
allele count: 1
allele frequency: 1.019139438657997e-5
allele num: 98122
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+9G>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+9G>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+9G>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+9G>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5029C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+9G>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+9G>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28432
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

7-94791295-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791295
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791295
    reference: chr 7
allele count: 1
allele frequency: 1.034382887169515e-5
allele num: 96676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+12C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5032G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+12C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+12C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+12C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+12C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+12C>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14232
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

7-94791296-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791296
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791296
    reference: chr 7
allele count: 1
allele frequency: 1.038572585838024e-5
allele num: 96286
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+13C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+13C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+13C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+13C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+13C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+13C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5033G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22129
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2401
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

7-94791305-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791305
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791305
    reference: chr 7
allele count: 1
allele frequency: 1.090560111673355e-5
allele num: 91696
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+22T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+22T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+22T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5042A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+22T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+22T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+22T>C
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3546
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10900
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3772
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

7-94791313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791313
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791313
    reference: chr 7
allele count: 2
allele frequency: 2.289796666056054e-5
allele num: 87344
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5050C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+30G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+30G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+30G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+30G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+30G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+30G>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11475
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9218
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22796
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11005
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4678
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4816
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24583
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1246
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-94791314-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94791314
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94791314
    reference: chr 7
allele count: 1
allele frequency: 1.153668666359022e-5
allele num: 86680
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1754+31T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1754+31T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1754+31T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.331-5051A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1754+31T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1754+31T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1754+31T>C
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5925
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10076
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ

7-94827611-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827611
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827611
    reference: chr 7
allele count: 1
allele frequency: 9.869135266367961e-6
allele num: 101326
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15886G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1755-50C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1755-50C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1755-50C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1755-50C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1755-50C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1755-50C>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10900
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4930
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2810
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1087
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6933
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4610
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

7-94827619-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827619
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827619
    reference: chr 7
allele count: 1
allele frequency: 9.815469179426777e-6
allele num: 101880
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1755-42T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15878A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1755-42T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1755-42T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1755-42T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1755-42T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1755-42T>C
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4644
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15195
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4611
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-94827633-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827633
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827633
    reference: chr 7
allele count: 1
allele frequency: 9.490907710413424e-6
allele num: 105364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1755-28A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1755-28A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1755-28A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1755-28A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1755-28A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1755-28A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15864T>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28312
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3282
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6952
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4745
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1595
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD

7-94827640-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827640
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827640
    reference: chr 7
allele count: 5
allele frequency: 4.620559642183862e-5
allele num: 108212
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1755-21T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1755-21T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1755-21T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1755-21T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1755-21T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15857A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1755-21T>C
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2774
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5882
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-94827641-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827641
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827641
    reference: chr 7
allele count: 1
allele frequency: 9.203696204395685e-6
allele num: 108652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1755-20C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1755-20C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1755-20C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1755-20C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15856G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1755-20C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1755-20C>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9748
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5601
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6634
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3496
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4799
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

7-94827645-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827645
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827645
    reference: chr 7
allele count: 1
allele frequency: 9.04110084443882e-6
allele num: 110606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1755-16G>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1755-16G>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1755-16G>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1755-16G>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15852C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1755-16G>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1755-16G>C
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10003
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6898
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29408
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2672
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

7-94827651-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827651
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827652
    reference: chr 7
allele count: 4
allele frequency: 3.535505312096732e-5
allele num: 113138
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15845dupA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1755-7dupT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1755-7dupT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1755-7dupT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1755-7dupT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1755-7dupT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1755-7dupT
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10267
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4891
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2752
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

7-94827657-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827657
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827657
    reference: chr 7
allele count: 3
allele frequency: 2.612330198537095e-5
allele num: 114840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1755-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1755-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1755-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1755-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1755-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1755-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15840T>C
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7218
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4936
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1755-4A>G
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

7-94827661-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827661
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827661
    reference: chr 7
allele count: 1
allele frequency: 8.644237751115106e-6
allele num: 115684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1755A>T
  hgvsp: ENSP00000344524.4:p.Arg585Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15836T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1755A>T
  hgvsp: ENSP00000398870.1:p.Arg585Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1755A>T
  hgvsp: ENSP00000411342.1:p.Arg585Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1755A>T
  hgvsp: ENSP00000405514.1:p.Arg585Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1755A>T
  hgvsp: ENSP00000402893.2:p.Arg585Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1755A>T
  hgvsp: ENSP00000289495.5:p.Arg585Ser
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2067
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg585Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

7-94827675-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827675
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827675
    reference: chr 7
allele count: 1
allele frequency: 8.476300264460568e-6
allele num: 117976
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15822C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1769G>A
  hgvsp: ENSP00000405514.1:p.Arg590Gln
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1769G>A
  hgvsp: ENSP00000411342.1:p.Arg590Gln
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1769G>A
  hgvsp: ENSP00000344524.4:p.Arg590Gln
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1769G>A
  hgvsp: ENSP00000289495.5:p.Arg590Gln
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1769G>A
  hgvsp: ENSP00000398870.1:p.Arg590Gln
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1769G>A
  hgvsp: ENSP00000402893.2:p.Arg590Gln
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10765
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3841
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2917
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg590Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD

7-94827687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827687
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827687
    reference: chr 7
allele count: 1
allele frequency: 8.377033524888167e-6
allele num: 119374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1781G>A
  hgvsp: ENSP00000411342.1:p.Gly594Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1781G>A
  hgvsp: ENSP00000398870.1:p.Gly594Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1781G>A
  hgvsp: ENSP00000405514.1:p.Gly594Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1781G>A
  hgvsp: ENSP00000344524.4:p.Gly594Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1781G>A
  hgvsp: ENSP00000402893.2:p.Gly594Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1781G>A
  hgvsp: ENSP00000289495.5:p.Gly594Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15810C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36399
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2889
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33931
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly594Glu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-94827724-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827724
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827724
    reference: chr 7
allele count: 5
allele frequency: 4.14112970018221e-5
allele num: 120740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1818A>G
  hgvsp: ENST00000456331.2:c.1818A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15773T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1818A>G
  hgvsp: ENST00000424654.1:c.1818A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1818A>G
  hgvsp: ENST00000433881.1:c.1818A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1818A>G
  hgvsp: ENST00000289495.5:c.1818A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1818A>G
  hgvsp: ENST00000433360.1:c.1818A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1818A>G
  hgvsp: ENST00000340694.4:c.1818A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34911
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5037
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7584
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr606Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ

7-94827739-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827739
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827739
    reference: chr 7
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1833G>A
  hgvsp: ENST00000456331.2:c.1833G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1833G>A
  hgvsp: ENST00000433360.1:c.1833G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1833G>A
  hgvsp: ENST00000340694.4:c.1833G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1833G>A
  hgvsp: ENST00000424654.1:c.1833G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15758C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1833G>A
  hgvsp: ENST00000433881.1:c.1833G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1833G>A
  hgvsp: ENST00000289495.5:c.1833G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2952
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2904
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg611Arg
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-94827740-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827740
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827740
    reference: chr 7
allele count: 26
allele frequency: 2.153851251718939e-4
allele num: 120714
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1834C>T
  hgvsp: ENSP00000398870.1:p.Arg612Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1834C>T
  hgvsp: ENSP00000405514.1:p.Arg612Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1834C>T
  hgvsp: ENSP00000411342.1:p.Arg612Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1834C>T
  hgvsp: ENSP00000289495.5:p.Arg612Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1834C>T
  hgvsp: ENSP00000344524.4:p.Arg612Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15757G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1834C>T
  hgvsp: ENSP00000402893.2:p.Arg612Cys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11544
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg612Cys
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

7-94827741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827741
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827741
    reference: chr 7
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1835G>A
  hgvsp: ENSP00000405514.1:p.Arg612His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1835G>A
  hgvsp: ENSP00000344524.4:p.Arg612His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15756C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1835G>A
  hgvsp: ENSP00000402893.2:p.Arg612His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1835G>A
  hgvsp: ENSP00000398870.1:p.Arg612His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1835G>A
  hgvsp: ENSP00000411342.1:p.Arg612His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1835G>A
  hgvsp: ENSP00000289495.5:p.Arg612His
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg612His
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-94827741-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827741
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827741
    reference: chr 7
allele count: 1
allele frequency: 8.286239870071759e-6
allele num: 120682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1835G>T
  hgvsp: ENSP00000289495.5:p.Arg612Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15756C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1835G>T
  hgvsp: ENSP00000398870.1:p.Arg612Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1835G>T
  hgvsp: ENSP00000411342.1:p.Arg612Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1835G>T
  hgvsp: ENSP00000344524.4:p.Arg612Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1835G>T
  hgvsp: ENSP00000405514.1:p.Arg612Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1835G>T
  hgvsp: ENSP00000402893.2:p.Arg612Leu
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34764
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg612Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

7-94827746-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827746
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827746
    reference: chr 7
allele count: 2
allele frequency: 1.657769967839263e-5
allele num: 120644
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1840A>G
  hgvsp: ENSP00000398870.1:p.Arg614Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1840A>G
  hgvsp: ENSP00000405514.1:p.Arg614Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1840A>G
  hgvsp: ENSP00000402893.2:p.Arg614Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15751T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1840A>G
  hgvsp: ENSP00000344524.4:p.Arg614Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1840A>G
  hgvsp: ENSP00000411342.1:p.Arg614Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1840A>G
  hgvsp: ENSP00000289495.5:p.Arg614Gly
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3883
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2950
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7580
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg614Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

7-94827762-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827762
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827762
    reference: chr 7
allele count: 2
allele frequency: 1.663450662053363e-5
allele num: 120232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1856A>G
  hgvsp: ENSP00000344524.4:p.Gln619Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1856A>G
  hgvsp: ENSP00000398870.1:p.Gln619Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1856A>G
  hgvsp: ENSP00000289495.5:p.Gln619Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1856A>G
  hgvsp: ENSP00000411342.1:p.Gln619Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1856A>G
  hgvsp: ENSP00000402893.2:p.Gln619Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15735T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1856A>G
  hgvsp: ENSP00000405514.1:p.Gln619Arg
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7550
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34173
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln619Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-94827765-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827765
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827765
    reference: chr 7
allele count: 1
allele frequency: 8.329862557267805e-6
allele num: 120050
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15732T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1859A>G
  hgvsp: ENSP00000289495.5:p.His620Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1859A>G
  hgvsp: ENSP00000405514.1:p.His620Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1859A>G
  hgvsp: ENSP00000398870.1:p.His620Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1859A>G
  hgvsp: ENSP00000402893.2:p.His620Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1859A>G
  hgvsp: ENSP00000411342.1:p.His620Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1859A>G
  hgvsp: ENSP00000344524.4:p.His620Arg
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5942
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 8.75e1
  variant carriers: 0
hgvs: p.His620Arg
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

7-94827768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827768
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827768
    reference: chr 7
allele count: 2
allele frequency: 1.669699954918101e-5
allele num: 119782
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1862A>G
  hgvsp: ENSP00000402893.2:p.Tyr621Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15729T>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1862A>G
  hgvsp: ENSP00000405514.1:p.Tyr621Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1862A>G
  hgvsp: ENSP00000398870.1:p.Tyr621Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1862A>G
  hgvsp: ENSP00000411342.1:p.Tyr621Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1862A>G
  hgvsp: ENSP00000344524.4:p.Tyr621Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1862A>G
  hgvsp: ENSP00000289495.5:p.Tyr621Cys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35625
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33526
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr621Cys
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-94827770-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827770
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827770
    reference: chr 7
allele count: 4
allele frequency: 3.339734491107957e-5
allele num: 119770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1864G>T
  hgvsp: ENSP00000344524.4:p.Ala622Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1864G>T
  hgvsp: ENSP00000289495.5:p.Ala622Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15727C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1864G>T
  hgvsp: ENSP00000402893.2:p.Ala622Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1864G>T
  hgvsp: ENSP00000405514.1:p.Ala622Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1864G>T
  hgvsp: ENSP00000398870.1:p.Ala622Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1864G>T
  hgvsp: ENSP00000411342.1:p.Ala622Ser
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33581
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala622Ser
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD

7-94827784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827784
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827784
    reference: chr 7
allele count: 1
allele frequency: 8.469695429752346e-6
allele num: 118068
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1878C>T
  hgvsp: ENST00000433360.1:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1878C>T
  hgvsp: ENST00000340694.4:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1878C>T
  hgvsp: ENST00000456331.2:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1878C>T
  hgvsp: ENST00000424654.1:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1878C>T
  hgvsp: ENST00000289495.5:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1878C>T
  hgvsp: ENST00000433881.1:c.1878C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15713G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3864
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7357
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala626Ala
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

7-94827785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827785
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827785
    reference: chr 7
allele count: 7
allele frequency: 5.929088106249259e-5
allele num: 118062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1879G>A
  hgvsp: ENSP00000398870.1:p.Asp627Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1879G>A
  hgvsp: ENSP00000411342.1:p.Asp627Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1879G>A
  hgvsp: ENSP00000405514.1:p.Asp627Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15712C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1879G>A
  hgvsp: ENSP00000289495.5:p.Asp627Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1879G>A
  hgvsp: ENSP00000402893.2:p.Asp627Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1879G>A
  hgvsp: ENSP00000344524.4:p.Asp627Asn
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31700
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5082
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp627Asn
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

7-94827787-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827787
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827787
    reference: chr 7
allele count: 1
allele frequency: 8.483347189467077e-6
allele num: 117878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1881C>T
  hgvsp: ENST00000424654.1:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1881C>T
  hgvsp: ENST00000340694.4:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1881C>T
  hgvsp: ENST00000433881.1:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1881C>T
  hgvsp: ENST00000433360.1:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15710G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1881C>T
  hgvsp: ENST00000456331.2:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1881C>T
  hgvsp: ENST00000289495.5:c.1881C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2859
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5081
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7347
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31613
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp627Asp
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD

7-94827790-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827790
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827790
    reference: chr 7
allele count: 1
allele frequency: 8.499209573509664e-6
allele num: 117658
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1884T>G
  hgvsp: ENSP00000398870.1:p.Asp628Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1884T>G
  hgvsp: ENSP00000289495.5:p.Asp628Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1884T>G
  hgvsp: ENSP00000344524.4:p.Asp628Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1884T>G
  hgvsp: ENSP00000402893.2:p.Asp628Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1884T>G
  hgvsp: ENSP00000405514.1:p.Asp628Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15707A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1884T>G
  hgvsp: ENSP00000411342.1:p.Asp628Glu
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7345
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5082
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asp628Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD

7-94827793-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827793
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827793
    reference: chr 7
allele count: 7
allele frequency: 5.97137153873714e-5
allele num: 117226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1887C>T
  hgvsp: ENST00000340694.4:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1887C>T
  hgvsp: ENST00000433881.1:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1887C>T
  hgvsp: ENST00000433360.1:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1887C>T
  hgvsp: ENST00000456331.2:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1887C>T
  hgvsp: ENST00000424654.1:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1887C>T
  hgvsp: ENST00000289495.5:c.1887C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15704G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2864
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3248
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp629Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

7-94827794-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827794
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827794
    reference: chr 7
allele count: 10
allele frequency: 8.538397172082856e-5
allele num: 117118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1888G>A
  hgvsp: ENSP00000344524.4:p.Glu630Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1888G>A
  hgvsp: ENSP00000398870.1:p.Glu630Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15703C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1888G>A
  hgvsp: ENSP00000405514.1:p.Glu630Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1888G>A
  hgvsp: ENSP00000411342.1:p.Glu630Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1888G>A
  hgvsp: ENSP00000402893.2:p.Glu630Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1888G>A
  hgvsp: ENSP00000289495.5:p.Glu630Lys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu630Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

7-94827799-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827799
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827799
    reference: chr 7
allele count: 1
allele frequency: 8.573976267233693e-6
allele num: 116632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1890+3C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1890+3C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1890+3C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1890+3C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1890+3C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1890+3C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15698G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5095
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1890+3C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

7-94827813-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827813
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827813
    reference: chr 7
allele count: 1854
allele frequency: 1.610913198366496e-2
allele num: 115090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1890+17A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1890+17A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15684T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1890+17A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1890+17A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1890+17A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1890+17A>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10167
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2075
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 31877
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2349
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5729
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 9.75e1
  variant carriers: 1483
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6799
  bin: 9.75e1
  variant carriers: 1782
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7078
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 3
num of homozygotes: 68
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

7-94827824-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94827824
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94827824
    reference: chr 7
allele count: 1
allele frequency: 8.800802633200148e-6
allele num: 113626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1890+28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1890+28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1890+28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1890+28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1890+28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1890+28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+15673A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3756
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

7-94832932-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94832932
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94832932
    reference: chr 7
allele count: 34
allele frequency: 1.770833333333333e-3
allele num: 19200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1890+5136G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1891-45G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1890+5136G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+10565C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1890+5136G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1890+5136G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1890+5136G>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 2
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

7-94832935-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94832935
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94832935
    reference: chr 7
allele count: 2
allele frequency: 1.03982530934803e-4
allele num: 19234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1890+5139G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1890+5139G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1890+5139G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1890+5139G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+10562C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1891-42G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1890+5139G>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

7-94832982-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94832982
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94832982
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 19918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1890+5186T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1890+5186T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1890+5186T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+10515A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1890+5186T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1890+5186T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1896T>C
  hgvsp: ENST00000433360.1:c.1896T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4933
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr632Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS

7-94832983-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94832983
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94832983
    reference: chr 7
allele count: 1
allele frequency: 5.019576347756249e-5
allele num: 19922
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1890+5187G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1897G>A
  hgvsp: ENSP00000405514.1:p.Val633Met
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+10514C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1890+5187G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1890+5187G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1890+5187G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1890+5187G>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val633Met
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

7-94832986-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94832986
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94832986
    reference: chr 7
allele count: 1
allele frequency: 5.017057997190448e-5
allele num: 19932
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+10511C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1900G>A
  hgvsp: ENSP00000405514.1:p.Ala634Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1890+5190G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1890+5190G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1890+5190G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1890+5190G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1890+5190G>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala634Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

7-94833021-CAAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94833021
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94833018
    reference: chr 7
allele count: 21
allele frequency: 1.055488540410133e-3
allele num: 19896
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1890+5228_1890+5230delTAA
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+10473_148+10475delATT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1890+5228_1890+5230delTAA
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1938_1940delTAA
  hgvsp: ENSP00000405514.1:p.Asn648del
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1890+5228_1890+5230delTAA
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1890+5228_1890+5230delTAA
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1890+5228_1890+5230delTAA
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4867
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asn648del
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: CAAT
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

7-94833090-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94833090
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94833090
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 18682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1890+5294A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1956+48A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000236197
  ensembl transcript: ENST00000417881
  gene symbol: AC002429.5
  hgvsc: ENST00000417881.2:n.148+10407T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1890+5294A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1890+5294A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1890+5294A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1890+5294A>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

7-94855223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855223
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855223
    reference: chr 7
allele count: 1
allele frequency: 8.394473078924836e-6
allele num: 119126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1891-50C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1891-50C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1891-50C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1957-50C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1891-50C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1891-50C>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5013
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8902
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26460
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

7-94855232-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855232
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855232
    reference: chr 7
allele count: 1
allele frequency: 8.378718056137411e-6
allele num: 119350
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1891-41G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1957-41G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1891-41G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1891-41G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1891-41G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1891-41G>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11324
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13245
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3504
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9002
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

7-94855256-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855256
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855256
    reference: chr 7
allele count: 1
allele frequency: 8.331111703545721e-6
allele num: 120032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1891-17A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1957-17A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1891-17A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1891-17A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1891-17A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1891-17A>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13476
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33592
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4967
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

7-94855262-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855262
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855262
    reference: chr 7
allele count: 1
allele frequency: 8.316284949187499e-6
allele num: 120246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1891-11C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1891-11C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1891-11C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1891-11C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1957-11C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1891-11C>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20864
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4966
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-94855263-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855263
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855263
    reference: chr 7
allele count: 1
allele frequency: 8.31282835672009e-6
allele num: 120296
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1957-10T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1891-10T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1891-10T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1891-10T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1891-10T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1891-10T>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33998
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

7-94855264-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855264
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855264
    reference: chr 7
allele count: 1
allele frequency: 8.310479514667997e-6
allele num: 120330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1891-9T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1891-9T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1891-9T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1957-9T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1891-9T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1891-9T>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34048
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

7-94855265-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855265
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855265
    reference: chr 7
allele count: 1
allele frequency: 8.308546170591069e-6
allele num: 120358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1891-8C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1957-8C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1891-8C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1891-8C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1891-8C>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1891-8C>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1957-8C>G
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

7-94855284-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855284
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855284
    reference: chr 7
allele count: 1
allele frequency: 8.274994621253496e-6
allele num: 120846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1902T>C
  hgvsp: ENST00000433881.1:c.1902T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1902T>C
  hgvsp: ENST00000424654.1:c.1902T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1968T>C
  hgvsp: ENST00000433360.1:c.1968T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1902T>C
  hgvsp: ENST00000456331.2:c.1902T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1902T>C
  hgvsp: ENST00000289495.5:c.1902T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1902T>C
  hgvsp: ENST00000340694.4:c.1902T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9364
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr656Tyr
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

7-94855291-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855291
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855291
    reference: chr 7
allele count: 1
allele frequency: 8.271298593879239e-6
allele num: 120900
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1909G>A
  hgvsp: ENSP00000402893.2:p.Asp637Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1909G>A
  hgvsp: ENSP00000411342.1:p.Asp637Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1909G>A
  hgvsp: ENSP00000289495.5:p.Asp637Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1909G>A
  hgvsp: ENSP00000398870.1:p.Asp637Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1975G>A
  hgvsp: ENSP00000405514.1:p.Asp659Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1909G>A
  hgvsp: ENSP00000344524.4:p.Asp637Asn
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp659Asn
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-94855293-T-TGAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855293
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855296
    reference: chr 7
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: TGAA
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1920_1922dupAGA
  hgvsp: ENSP00000411342.1:p.Glu640dup
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1920_1922dupAGA
  hgvsp: ENSP00000344524.4:p.Glu640dup
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1920_1922dupAGA
  hgvsp: ENSP00000402893.2:p.Glu640dup
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1920_1922dupAGA
  hgvsp: ENSP00000289495.5:p.Glu640dup
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1920_1922dupAGA
  hgvsp: ENSP00000398870.1:p.Glu640dup
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1986_1988dupAGA
  hgvsp: ENSP00000405514.1:p.Glu662dup
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4970
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2729
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9382
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu662dup
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

7-94855293-TGAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855293
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855290
    reference: chr 7
allele count: 16
allele frequency: 1.323210770935675e-4
allele num: 120918
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1986_1988delAGA
  hgvsp: ENSP00000405514.1:p.Glu662del
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1920_1922delAGA
  hgvsp: ENSP00000289495.5:p.Glu640del
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1920_1922delAGA
  hgvsp: ENSP00000398870.1:p.Glu640del
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1920_1922delAGA
  hgvsp: ENSP00000344524.4:p.Glu640del
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1920_1922delAGA
  hgvsp: ENSP00000402893.2:p.Glu640del
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1920_1922delAGA
  hgvsp: ENSP00000411342.1:p.Glu640del
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu662del
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: TGAA
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/7-94855301-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855301
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855301
    reference: chr 7
allele count: 2
allele frequency: 1.653247805313538e-5
allele num: 120974
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1985A>C
  hgvsp: ENSP00000405514.1:p.Glu662Ala
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1919A>C
  hgvsp: ENSP00000411342.1:p.Glu640Ala
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1919A>C
  hgvsp: ENSP00000289495.5:p.Glu640Ala
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1919A>C
  hgvsp: ENSP00000398870.1:p.Glu640Ala
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1919A>C
  hgvsp: ENSP00000402893.2:p.Glu640Ala
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1919A>C
  hgvsp: ENSP00000344524.4:p.Glu640Ala
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu662Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-94855302-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855302
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855302
    reference: chr 7
allele count: 2
allele frequency: 1.653165812530997e-5
allele num: 120980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1920A>T
  hgvsp: ENSP00000398870.1:p.Glu640Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1920A>T
  hgvsp: ENSP00000402893.2:p.Glu640Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1920A>T
  hgvsp: ENSP00000411342.1:p.Glu640Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1920A>T
  hgvsp: ENSP00000344524.4:p.Glu640Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1920A>T
  hgvsp: ENSP00000289495.5:p.Glu640Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1986A>T
  hgvsp: ENSP00000405514.1:p.Glu662Asp
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13604
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13348
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34827
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4957
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu662Asp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

7-94855303-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855303
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855303
    reference: chr 7
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1921G>C
  hgvsp: ENSP00000344524.4:p.Asp641His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1921G>C
  hgvsp: ENSP00000402893.2:p.Asp641His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1921G>C
  hgvsp: ENSP00000398870.1:p.Asp641His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1987G>C
  hgvsp: ENSP00000405514.1:p.Asp663His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1921G>C
  hgvsp: ENSP00000289495.5:p.Asp641His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1921G>C
  hgvsp: ENSP00000411342.1:p.Asp641His
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp663His
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-94855309-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855309
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855309
    reference: chr 7
allele count: 2
allele frequency: 1.652810604432838e-5
allele num: 121006
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1993G>A
  hgvsp: ENSP00000405514.1:p.Val665Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1927G>A
  hgvsp: ENSP00000398870.1:p.Val643Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1927G>A
  hgvsp: ENSP00000289495.5:p.Val643Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1927G>A
  hgvsp: ENSP00000411342.1:p.Val643Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1927G>A
  hgvsp: ENSP00000402893.2:p.Val643Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1927G>A
  hgvsp: ENSP00000344524.4:p.Val643Ile
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21539
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4956
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34830
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val665Ile
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

7-94855320-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855320
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855320
    reference: chr 7
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1938C>G
  hgvsp: ENST00000289495.5:c.1938C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1938C>G
  hgvsp: ENST00000456331.2:c.1938C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1938C>G
  hgvsp: ENST00000433881.1:c.1938C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.2004C>G
  hgvsp: ENST00000433360.1:c.2004C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1938C>G
  hgvsp: ENST00000340694.4:c.1938C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1938C>G
  hgvsp: ENST00000424654.1:c.1938C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21580
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3502
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9388
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val668Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

7-94855321-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855321
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855321
    reference: chr 7
allele count: 1
allele frequency: 8.262823902696986e-6
allele num: 121024
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1939C>G
  hgvsp: ENSP00000398870.1:p.Leu647Val
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1939C>G
  hgvsp: ENSP00000411342.1:p.Leu647Val
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1939C>G
  hgvsp: ENSP00000289495.5:p.Leu647Val
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1939C>G
  hgvsp: ENSP00000402893.2:p.Leu647Val
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1939C>G
  hgvsp: ENSP00000344524.4:p.Leu647Val
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.2005C>G
  hgvsp: ENSP00000405514.1:p.Leu669Val
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34844
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4954
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu669Val
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

7-94855328-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855328
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855328
    reference: chr 7
allele count: 1
allele frequency: 8.263370132874991e-6
allele num: 121016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1946G>T
  hgvsp: ENSP00000402893.2:p.Gly649Val
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1946G>T
  hgvsp: ENSP00000344524.4:p.Gly649Val
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.2012G>T
  hgvsp: ENSP00000405514.1:p.Gly671Val
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1946G>T
  hgvsp: ENSP00000289495.5:p.Gly649Val
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1946G>T
  hgvsp: ENSP00000411342.1:p.Gly649Val
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1946G>T
  hgvsp: ENSP00000398870.1:p.Gly649Val
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4953
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly671Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/7-94855329-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855329
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855329
    reference: chr 7
allele count: 2
allele frequency: 1.652564780539397e-5
allele num: 121024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1947C>A
  hgvsp: ENST00000424654.1:c.1947C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1947C>A
  hgvsp: ENST00000340694.4:c.1947C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1947C>A
  hgvsp: ENST00000433881.1:c.1947C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1947C>A
  hgvsp: ENST00000456331.2:c.1947C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1947C>A
  hgvsp: ENST00000289495.5:c.1947C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.2013C>A
  hgvsp: ENST00000433360.1:c.2013C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly671Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

7-94855332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855332
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855332
    reference: chr 7
allele count: 6
allele frequency: 4.95785820525533e-5
allele num: 121020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1950C>T
  hgvsp: ENST00000340694.4:c.1950C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.2016C>T
  hgvsp: ENST00000433360.1:c.2016C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1950C>T
  hgvsp: ENST00000456331.2:c.1950C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1950C>T
  hgvsp: ENST00000433881.1:c.1950C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1950C>T
  hgvsp: ENST00000424654.1:c.1950C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1950C>T
  hgvsp: ENST00000289495.5:c.1950C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3494
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9385
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser672Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

7-94855333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855333
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855333
    reference: chr 7
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1951G>A
  hgvsp: ENSP00000289495.5:p.Asp651Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.2017G>A
  hgvsp: ENSP00000405514.1:p.Asp673Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1951G>A
  hgvsp: ENSP00000344524.4:p.Asp651Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1951G>A
  hgvsp: ENSP00000402893.2:p.Asp651Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1951G>A
  hgvsp: ENSP00000411342.1:p.Asp651Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1951G>A
  hgvsp: ENSP00000398870.1:p.Asp651Asn
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4951
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp673Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP

7-94855337-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94855337
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94855337
    reference: chr 7
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1955T>A
  hgvsp: ENSP00000411342.1:p.Met652Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.2021T>A
  hgvsp: ENSP00000405514.1:p.Met674Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1955T>A
  hgvsp: ENSP00000398870.1:p.Met652Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1955T>A
  hgvsp: ENSP00000402893.2:p.Met652Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1955T>A
  hgvsp: ENSP00000289495.5:p.Met652Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1955T>A
  hgvsp: ENSP00000344524.4:p.Met652Lys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2384
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34921
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4951
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met674Lys
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11691
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38967
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2225
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13984
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.740280533221956e-5
allele num: 57462
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.305e0

QD
type: SiteQuality
SIO_000300: 7.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.323e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

DP
type: SiteQuality
SIO_000300: 1.303125e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 5.428e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

GenotypeQuality
all individuals: 279
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 907
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38732
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9008
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6162
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.745810055865922e-5
allele num: 57280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13954
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.64e-1

FS
type: SiteQuality
SIO_000300: 7.593e0

QD
type: SiteQuality
SIO_000300: 1.627e1

MQRankSum
type: SiteQuality
SIO_000300: 1.88e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.359e0

DP
type: SiteQuality
SIO_000300: 1.29843e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.866e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.223e0

GenotypeQuality
all individuals: 562
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33350
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2050
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.620564808110065e-5
allele num: 55240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13546
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.012e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e0

FS
type: SiteQuality
SIO_000300: 3.441e0

MQRankSum
type: SiteQuality
SIO_000300: -1.76e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e-1

MQ
type: SiteQuality
SIO_000300: 5.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.11e-1

DP
type: SiteQuality
SIO_000300: 1.230332e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.81e-1

GenotypeQuality
all individuals: 29528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.712228079293192e-5
allele num: 53876
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

FS
type: SiteQuality
SIO_000300: 9.19e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

DP
type: SiteQuality
SIO_000300: 1.189027e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

GenotypeQuality
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17746
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.540340823405218e-5
allele num: 13262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.856114039646596e-5
allele num: 53876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

FS
type: SiteQuality
SIO_000300: 9.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

DP
type: SiteQuality
SIO_000300: 1.189027e6

MQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

GenotypeQuality
all individuals: 2054
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29528
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.568342118939788e-5
allele num: 53876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.189027e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.38e-1

FS
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.13e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.79e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 736
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.584951456310679e-5
allele num: 13184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.517823639774859e-4
allele num: 8528
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.318e1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.433e0

FS
type: SiteQuality
SIO_000300: 4.705e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 1.175477e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

GenotypeQuality
all individuals: 252
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1789
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2052
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 263
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.868879419899828e-5
allele num: 53508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9932
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

QD
type: SiteQuality
SIO_000300: 1.318e1

FS
type: SiteQuality
SIO_000300: 4.705e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.433e0

MQRankSum
type: SiteQuality
SIO_000300: -6.66e-1

DP
type: SiteQuality
SIO_000300: 1.175477e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

GenotypeQuality
all individuals: 1999
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19939
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.900129208786197e-5
allele num: 52628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13050
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9804
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.795e0

MQRankSum
type: SiteQuality
SIO_000300: -1.468e0

DP
type: SiteQuality
SIO_000300: 1.145772e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.29e-1

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 243
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.907232224595667e-5
allele num: 52432
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

DP
type: SiteQuality
SIO_000300: 1.135331e6

FS
type: SiteQuality
SIO_000300: 3.039e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.351e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.72e-1

QD
type: SiteQuality
SIO_000300: 1.498e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 24075
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.000720259293346e-5
allele num: 49982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.33e0

QD
type: SiteQuality
SIO_000300: 7.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.111e0

DP
type: SiteQuality
SIO_000300: 1.027845e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5032
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.197271773347324e-5
allele num: 47650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8796
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.54713e5

VQSLOD
type: SiteQuality
SIO_000300: -1.183e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.06e-1

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.25e0

MQ
type: SiteQuality
SIO_000300: 5.833e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4966
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47274
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.409014463504877e-5
allele num: 11892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e0

MQRankSum
type: SiteQuality
SIO_000300: -1.035e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.217e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.112e0

DP
type: SiteQuality
SIO_000300: 9.42107e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.714e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.0e-4
allele num: 10000
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.233998e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.582e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 8.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.794e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.41e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58030
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10072
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.356116083536751e-4
allele num: 7374
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.32e0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.281455e6

QD
type: SiteQuality
SIO_000300: 1.399e1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.76e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.44822373393802e-5
allele num: 10584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59920
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10584
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.081e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.417424e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.645e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7806
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 5
allele frequency: 4.592211609110948e-4
allele num: 10888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.467155e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.26e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10968
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

African
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allele frequency: 1.028171910343409e-4
allele num: 9726
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61828
num of homozygotes: 0

South Asian
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allele num: 10944
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.474077e6

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

South Asian
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allele count: 0
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allele num: 11204
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8042
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11164
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.589471341831707e-5
allele num: 62914
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.499903e6

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.63e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.894e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.229171208770673e-5
allele num: 64214
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
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Other
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
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East Asian
type: Population
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
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SIO_000300: -5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

MQ
type: SiteQuality
SIO_000300: 6.065e1

FS
type: SiteQuality
SIO_000300: 2.223e0

DP
type: SiteQuality
SIO_000300: 1.530796e6

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.623351004808285e-5
allele num: 64888
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.473e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.46e-1

DP
type: SiteQuality
SIO_000300: 1.548846e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.018e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.761e0

QD
type: SiteQuality
SIO_000300: 1.483e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12710
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.534589650727396e-5
allele num: 65164
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 5.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

BaseQRankSum
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MQRankSum
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SIO_000300: -6.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e-1

DP
type: SiteQuality
SIO_000300: 1.558741e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65776
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.0795e1

DP
type: SiteQuality
SIO_000300: 1.585512e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.61e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.477e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.733e0

VQSLOD
type: SiteQuality
SIO_000300: -2.247e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.784e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

BaseQRankSum
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SIO_000300: -1.765e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.651e0

DP
type: SiteQuality
SIO_000300: 1.601451e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16074
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 5
allele frequency: 7.517214421024145e-5
allele num: 66514
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: -5.82e-1

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.618001e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
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allele num: 16064
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
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East Asian
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allele frequency: 0.0e0
allele num: 8650
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Latino
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num of homozygotes: 0

MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
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European (Finnish)
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allele count: 3
allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.856799182053287e-4
allele num: 66508
num of homozygotes: 0

East Asian
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South Asian
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African
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allele frequency: 9.609840476648087e-5
allele num: 10406
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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DP
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QD
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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East Asian
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66500
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Other
type: Population
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Latino
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South Asian
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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DP
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VQSLOD
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MQ
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

European (Finnish)
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Other
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African
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South Asian
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ReadPosRankSum
type: SiteQuality
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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FS
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DP
type: SiteQuality
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.25e-4
allele num: 16000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66490
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

FS
type: SiteQuality
SIO_000300: 3.527e0

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.06e-1

QD
type: SiteQuality
SIO_000300: 1.087e1

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 1.618846e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 95
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15718
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66368
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.612634e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

QD
type: SiteQuality
SIO_000300: 1.294e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66326
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15582
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.609988e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e0

FS
type: SiteQuality
SIO_000300: 2.085e0

VQSLOD
type: SiteQuality
SIO_000300: -1.012e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.17e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 5071
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018503426001389e-5
allele num: 66258
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.04e0

FS
type: SiteQuality
SIO_000300: 1.746e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.257e1

VQSLOD
type: SiteQuality
SIO_000300: 8.37e-1

MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
SIO_000300: 1.606187e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.668e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 2.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2946
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.037735849056604e-5
allele num: 66250
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.473e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.60637e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

GenotypeQuality
all individuals: 309
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1641
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519202722411279e-5
allele num: 65824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14188
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

FS
type: SiteQuality
SIO_000300: 3.932e0

DP
type: SiteQuality
SIO_000300: 1.580564e6

QD
type: SiteQuality
SIO_000300: 1.042e1

MQ
type: SiteQuality
SIO_000300: 5.991e1

VQSLOD
type: SiteQuality
SIO_000300: -1.127e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.99e0

GenotypeQuality
all individuals: 319
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variant carriers: 0

GenotypeQuality
all individuals: 309
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2871
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14182
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.826254826254826e-4
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.038128512836093e-5
allele num: 65830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.445e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

QD
type: SiteQuality
SIO_000300: 1.155e1

FS
type: SiteQuality
SIO_000300: 2.572e0

DP
type: SiteQuality
SIO_000300: 1.58088e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 68
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520172691617768e-5
allele num: 65782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

DP
type: SiteQuality
SIO_000300: 1.578931e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.667e0

FS
type: SiteQuality
SIO_000300: 5.4e-1

QD
type: SiteQuality
SIO_000300: 1.075e1

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521329033043267e-5
allele num: 65732
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.79e0

MQ
type: SiteQuality
SIO_000300: 5.915e1

QD
type: SiteQuality
SIO_000300: 1.048e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52401853206535e-5
allele num: 65616
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.330504070673827e-4
allele num: 11546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

QD
type: SiteQuality
SIO_000300: 1.254e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

DP
type: SiteQuality
SIO_000300: 1.571454e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

GenotypeQuality
all individuals: 5095
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30969
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7322
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.145504984300216e-5
allele num: 65606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.960769800148038e-4
allele num: 13510
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.569385e6

QD
type: SiteQuality
SIO_000300: 1.176e1

MQ
type: SiteQuality
SIO_000300: 5.958e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.17e0

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.237e0

GenotypeQuality
all individuals: 2941
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2862
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3539
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7295
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13194
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159017153453871e-4
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.517e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 1.564078e6

VQSLOD
type: SiteQuality
SIO_000300: -9.449e-1

FS
type: SiteQuality
SIO_000300: 8.343e0

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.12e-1

MQ
type: SiteQuality
SIO_000300: 5.935e1

QD
type: SiteQuality
SIO_000300: 1.002e1

GenotypeQuality
all individuals: 3392
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3759
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1216
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 29292
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2892
bin: 8.25e1
variant carriers: 7

GenotypeQuality
all individuals: 2781
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 1

Other
type: Population
allele count: 14
allele frequency: 1.639344262295082e-2
allele num: 854
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 15
allele frequency: 2.267916540671303e-3
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.163918525703201e-3
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 215
allele frequency: 2.495936846993267e-2
allele num: 8614
num of homozygotes: 3

South Asian
type: Population
allele count: 253
allele frequency: 2.081619220009873e-2
allele num: 12154
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 180
allele frequency: 2.768208661417323e-3
allele num: 65024
num of homozygotes: 0

Latino
type: Population
allele count: 1165
allele frequency: 1.011284722222222e-1
allele num: 11520
num of homozygotes: 60

FS
type: SiteQuality
SIO_000300: 1.278e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

QD
type: SiteQuality
SIO_000300: 1.473e1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 1.746773e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.14e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

GenotypeQuality
all individuals: 2779
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6616
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 91
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2889
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64688
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.289999999999999e0

QD
type: SiteQuality
SIO_000300: 1.432e1

VQSLOD
type: SiteQuality
SIO_000300: 6.05e-1

FS
type: SiteQuality
SIO_000300: 1.503e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

DP
type: SiteQuality
SIO_000300: 1.638593e6

MQ
type: SiteQuality
SIO_000300: 5.994e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.93e-1

GenotypeQuality
all individuals: 431
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 257
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3390
bin: 9.75e1
variant carriers: 33

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 4.658810633050151e-3
allele num: 7298
num of homozygotes: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1600
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.553e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.09038e5

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

QD
type: SiteQuality
SIO_000300: 1.527e1

GenotypeQuality
all individuals: 136
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 327
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3371
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 176
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 304
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.994011976047904e-3
allele num: 334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1870
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.504504504504504e-3
allele num: 222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7306
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.626e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -1.498e-1

FS
type: SiteQuality
SIO_000300: 3.033e0

MQRankSum
type: SiteQuality
SIO_000300: -3.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.08e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
SIO_000300: 5.10785e5

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.31857e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 3.8e0

VQSLOD
type: SiteQuality
SIO_000300: -3.031e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4945
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.300390117035111e-4
allele num: 7690
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.859e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e0

QD
type: SiteQuality
SIO_000300: 1.009e1

VQSLOD
type: SiteQuality
SIO_000300: -2.872e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

DP
type: SiteQuality
SIO_000300: 5.3219e5

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.3e-2

FS
type: SiteQuality
SIO_000300: 5.3e-1

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4937
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7696
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7850
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.219206680584551e-4
allele num: 1916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

FS
type: SiteQuality
SIO_000300: 3.447e0

QD
type: SiteQuality
SIO_000300: 1.317e1

MQRankSum
type: SiteQuality
SIO_000300: -1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.19e-1

DP
type: SiteQuality
SIO_000300: 5.32322e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 616
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3391
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 165
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.608242044861763e-4
allele num: 7668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1602
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 2.293577981651376e-3
allele num: 7848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.464285714285714e-3
allele num: 224
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

FS
type: SiteQuality
SIO_000300: 1.145e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.699999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.54e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

DP
type: SiteQuality
SIO_000300: 5.31952e5

QD
type: SiteQuality
SIO_000300: 1.407e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 7046
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.42e-1

DP
type: SiteQuality
SIO_000300: 4.96335e5

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515932450050026e-5
allele num: 65966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.924e1

DP
type: SiteQuality
SIO_000300: 1.837912e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.51e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.6e-1

FS
type: SiteQuality
SIO_000300: 7.696e0

VQSLOD
type: SiteQuality
SIO_000300: 8.48e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.166588894073728e-4
allele num: 8572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.856323e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.252e1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.29e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509844184080203e-5
allele num: 66232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

QD
type: SiteQuality
SIO_000300: 1.607e1

FS
type: SiteQuality
SIO_000300: 4.871e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.86e-1

DP
type: SiteQuality
SIO_000300: 1.888423e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9279
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-4
allele num: 6590
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16062
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.235e1

MQRankSum
type: SiteQuality
SIO_000300: -2.29e-1

DP
type: SiteQuality
SIO_000300: 1.894798e6

FS
type: SiteQuality
SIO_000300: 4.004e0

VQSLOD
type: SiteQuality
SIO_000300: -1.981e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.45e0

MQ
type: SiteQuality
SIO_000300: 5.809e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.76e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1418
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16084
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
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VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.895353e6

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: -1.8e-2

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.43e-2

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16102
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.149e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
SIO_000300: 5.787e1

FS
type: SiteQuality
SIO_000300: 8.080000000000001e-1

InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
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allele num: 16118
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.3172e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

DP
type: SiteQuality
SIO_000300: 1.897104e6

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10400
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South Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
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Other
type: Population
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allele frequency: 0.0e0
allele num: 904
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East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.118e0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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MQ
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FS
type: SiteQuality
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QD
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 38
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
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South Asian
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allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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SIO_000300: 2.08e0

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.301e0

QD
type: SiteQuality
SIO_000300: 1.088e1

FS
type: SiteQuality
SIO_000300: 1.141e0

DP
type: SiteQuality
SIO_000300: 1.907284e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.539e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1415
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

QD
type: SiteQuality
SIO_000300: 1.663e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

FS
type: SiteQuality
SIO_000300: 1.799e0

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

DP
type: SiteQuality
SIO_000300: 1.908219e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 16

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503126503126503e-5
allele num: 66528
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.212389380530973e-3
allele num: 904
num of homozygotes: 0

East Asian
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allele count: 13
allele frequency: 1.508470642840566e-3
allele num: 8618
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

FS
type: SiteQuality
SIO_000300: 1.799e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

MQ
type: SiteQuality
SIO_000300: 5.89e1

QD
type: SiteQuality
SIO_000300: 1.663e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

DP
type: SiteQuality
SIO_000300: 1.908219e6

MQRankSum
type: SiteQuality
SIO_000300: 5.41e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 990
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

QD
type: SiteQuality
SIO_000300: 1.414e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

DP
type: SiteQuality
SIO_000300: 1.908128e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.083e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 989
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 9384
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.749169144656288e-4
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.908345e6

MQRankSum
type: SiteQuality
SIO_000300: 8.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.35e-1

QD
type: SiteQuality
SIO_000300: 1.325e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.14e-1

FS
type: SiteQuality
SIO_000300: 3.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 990
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 34805
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 7.25e1
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GenotypeQuality
all individuals: 4955
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66550
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.43e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.283e0

FS
type: SiteQuality
SIO_000300: 4.071e0

QD
type: SiteQuality
SIO_000300: 1.461e1

DP
type: SiteQuality
SIO_000300: 1.908382e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-2

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 53
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variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9384
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variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213297743266198e-4
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 6.444e0

DP
type: SiteQuality
SIO_000300: 1.908867e6

VQSLOD
type: SiteQuality
SIO_000300: 2.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

QD
type: SiteQuality
SIO_000300: 1.353e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 45
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.163e1

DP
type: SiteQuality
SIO_000300: 1.909433e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

VQSLOD
type: SiteQuality
SIO_000300: 8.38e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.69e-1

FS
type: SiteQuality
SIO_000300: 4.837e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

FS
type: SiteQuality
SIO_000300: 3.392e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.484e0

MQRankSum
type: SiteQuality
SIO_000300: 4.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.329e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.717e1

DP
type: SiteQuality
SIO_000300: 1.909358e6

VQSLOD
type: SiteQuality
SIO_000300: 3.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 9
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.741258741258741e-5
allele num: 11440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.441e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.492e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.048e0

VQSLOD
type: SiteQuality
SIO_000300: -3.626e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

DP
type: SiteQuality
SIO_000300: 1.909356e6

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 4954
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 34864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9390
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.924557351809084e-4
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 1.402e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.122000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.447e0

DP
type: SiteQuality
SIO_000300: 1.909457e6

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4953
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2723
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.010903192863365e-5
allele num: 66586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

DP
type: SiteQuality
SIO_000300: 1.90968e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

QD
type: SiteQuality
SIO_000300: 1.169e1

FS
type: SiteQuality
SIO_000300: 5.26e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9381
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3494
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.898e1

QD
type: SiteQuality
SIO_000300: 1.278e1

VQSLOD
type: SiteQuality
SIO_000300: -3.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.088e0

FS
type: SiteQuality
SIO_000300: 1.885e0

DP
type: SiteQuality
SIO_000300: 1.90951e6

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0