6-31324710-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324710
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324710
    reference: chr 6
allele count: 3
allele frequency: 3.324762833584538e-5
allele num: 90232
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.287T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.131A>C
  hgvsp: ENSP00000405931.1:p.Tyr44Ser
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.98A>C
  hgvsp: ENSP00000399168.2:p.Tyr33Ser
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.119A>C
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7286
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10898
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5556
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4546
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2802
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11236
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5047
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3913
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr33Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-31324711-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324711
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324711
    reference: chr 6
allele count: 3951
allele frequency: 4.630041952797244e-2
allele num: 85334
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.288A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.130T>G
  hgvsp: ENSP00000405931.1:p.Tyr44Asp
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.118T>G
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.97T>G
  hgvsp: ENSP00000399168.2:p.Tyr33Asp
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10872
  bin: 1.25e1
  variant carriers: 937
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 2.5e0
  variant carriers: 431
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 2.25e1
  variant carriers: 640
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 8791
  bin: 7.5e0
  variant carriers: 1013
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 3.25e1
  variant carriers: 343
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 1.75e1
  variant carriers: 815
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.75e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 3.75e1
  variant carriers: 255
genotype quality: GenotypeQuality
  all individuals: 9925
  bin: 6.25e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 7.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 3.25e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 2.75e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 3741
  bin: 7.5e0
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 8735
  bin: 2.25e1
  variant carriers: 180
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 1.25e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 1.75e1
  variant carriers: 199
genotype quality: GenotypeQuality
  all individuals: 3766
  bin: 2.5e0
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 9.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 5.25e1
  variant carriers: 139
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 8.25e1
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 5.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 4.25e1
  variant carriers: 121
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 6.75e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 3.75e1
  variant carriers: 122
hgvs: p.Tyr33Asp
num of homozygotes: 87
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

6-31324711-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324711
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324711
    reference: chr 6
allele count: 14346
allele frequency: 1.681158740947336e-1
allele num: 85334
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.97T>C
  hgvsp: ENSP00000399168.2:p.Tyr33His
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.130T>C
  hgvsp: ENSP00000405931.1:p.Tyr44His
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.118T>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.288A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5642
  bin: 1.75e1
  variant carriers: 2472
genotype depth: GenotypeDepth
  all individuals: 8791
  bin: 7.5e0
  variant carriers: 1327
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.75e1
  variant carriers: 506
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 3.75e1
  variant carriers: 1007
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 3.25e1
  variant carriers: 1315
genotype depth: GenotypeDepth
  all individuals: 7278
  bin: 2.25e1
  variant carriers: 2243
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 9136
  bin: 2.75e1
  variant carriers: 1734
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 5.25e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 2.5e0
  variant carriers: 300
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 4.25e1
  variant carriers: 724
genotype depth: GenotypeDepth
  all individuals: 10872
  bin: 1.25e1
  variant carriers: 2186
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 6.75e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 4.25e1
  variant carriers: 258
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 1.25e1
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 4.75e1
  variant carriers: 298
genotype quality: GenotypeQuality
  all individuals: 2674
  bin: 6.75e1
  variant carriers: 213
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 5.75e1
  variant carriers: 203
genotype quality: GenotypeQuality
  all individuals: 1563
  bin: 3.75e1
  variant carriers: 361
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 1.75e1
  variant carriers: 396
genotype quality: GenotypeQuality
  all individuals: 3766
  bin: 2.5e0
  variant carriers: 178
genotype quality: GenotypeQuality
  all individuals: 14030
  bin: 9.75e1
  variant carriers: 9786
genotype quality: GenotypeQuality
  all individuals: 9925
  bin: 6.25e1
  variant carriers: 232
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 8.75e1
  variant carriers: 146
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 7.75e1
  variant carriers: 245
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 3.25e1
  variant carriers: 362
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 9.25e1
  variant carriers: 198
genotype quality: GenotypeQuality
  all individuals: 8735
  bin: 2.25e1
  variant carriers: 378
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 2.75e1
  variant carriers: 304
genotype quality: GenotypeQuality
  all individuals: 3741
  bin: 7.5e0
  variant carriers: 299
hgvs: p.Tyr33His
num of homozygotes: 1701
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

6-31324717-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324717
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324717
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 85994
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.91T>A
  hgvsp: ENSP00000399168.2:p.Tyr31Asn
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.294A>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.124T>A
  hgvsp: ENSP00000405931.1:p.Tyr42Asn
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.112T>A
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 13460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5811
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10023
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6275
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15662
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr31Asn
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

6-31324723-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324723
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324723
    reference: chr 6
allele count: 1
allele frequency: 1.191298753901503e-5
allele num: 83942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.118A>T
  hgvsp: ENSP00000405931.1:p.Met40Leu
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.85A>T
  hgvsp: ENSP00000399168.2:p.Met29Leu
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.300T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.106A>T
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13579
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7235
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4560
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3443
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15101
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10487
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met29Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-31324724-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324724
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324724
    reference: chr 6
allele count: 1
allele frequency: 1.200710820805917e-5
allele num: 83284
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.301G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.117C>T
  hgvsp: ENST00000434333.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.105C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.84C>T
  hgvsp: ENST00000412585.2:c.84C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6991
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10569
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2706
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4675
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 962
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 977
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10015
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7404
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2932
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14770
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser28Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

6-31324725-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324725
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324725
    reference: chr 6
allele count: 73
allele frequency: 8.830289101245918e-4
allele num: 82670
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.83C>T
  hgvsp: ENSP00000399168.2:p.Ser28Phe
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.302G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.104C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.116C>T
  hgvsp: ENSP00000405931.1:p.Ser39Phe
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 6231
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10695
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 14377
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7511
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 9399
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3537
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4783
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2754
  bin: 9.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 8.25e1
  variant carriers: 2
hgvs: p.Ser28Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ

6-31324730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324730
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324730
    reference: chr 6
allele count: 1035
allele frequency: 1.366444866920152e-2
allele num: 75744
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.78C>T
  hgvsp: ENST00000412585.2:c.78C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.99C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.307G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.111C>T
  hgvsp: ENST00000434333.1:c.111C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 11807
  bin: 7.5e0
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8430
  bin: 1.75e1
  variant carriers: 225
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 3.25e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 12176
  bin: 1.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5431
  bin: 2.25e1
  variant carriers: 202
genotype depth: GenotypeDepth
  all individuals: 5494
  bin: 2.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3374
  bin: 2.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 3788
  bin: 1.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 8.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 5489
  bin: 6.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 4.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 3038
  bin: 9.75e1
  variant carriers: 487
genotype quality: GenotypeQuality
  all individuals: 10383
  bin: 2.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 2.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 5.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 1.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 7220
  bin: 7.5e0
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 4928
  bin: 3.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 3.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 2299
  bin: 6.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 1239
  bin: 7.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 7.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 4.25e1
  variant carriers: 52
hgvs: p.Ser26Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff

6-31324736-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324736
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324736
    reference: chr 6
allele count: 1
allele frequency: 1.380529018719974e-5
allele num: 72436
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-2A>G
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-2A>G
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.105A>G
  hgvsp: ENST00000434333.1:c.105A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.313T>C
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12017
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2268
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3314
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6739
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2987
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5590
  bin: 6.25e1
  variant carriers: 0
hgvs: c.74-2A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

6-31324739-GGGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324739
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324736
    reference: chr 6
allele count: 2751
allele frequency: 3.601539589442816e-2
allele num: 76384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.99_101delACC
  hgvsp: ENSP00000405931.1:p.Pro35del
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-8_95-6delACC
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.318_320delGTG
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-8_74-6delACC
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 3.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 4.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 13084
  bin: 7.5e0
  variant carriers: 844
genotype depth: GenotypeDepth
  all individuals: 8046
  bin: 1.75e1
  variant carriers: 670
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 2.5e0
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 3.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 12158
  bin: 1.25e1
  variant carriers: 990
genotype depth: GenotypeDepth
  all individuals: 4783
  bin: 2.75e1
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 2.25e1
  variant carriers: 390
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 4.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 4402
  bin: 1.75e1
  variant carriers: 145
genotype quality: GenotypeQuality
  all individuals: 2774
  bin: 1.25e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 5.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 4.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 5.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 9620
  bin: 2.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 6706
  bin: 7.5e0
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 2.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 4866
  bin: 3.25e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 3769
  bin: 3.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 4061
  bin: 6.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 8.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 6.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 8.75e1
  variant carriers: 41
hgvs: p.Pro35del
num of homozygotes: 88
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GGGT
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

6-31324740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324740
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324740
    reference: chr 6
allele count: 13
allele frequency: 1.824612620705143e-4
allele num: 71248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.101C>T
  hgvsp: ENSP00000405931.1:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-6C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-6C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.317G>A
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6097
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11205
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12216
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1615
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4044
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4216
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4813
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6652
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9747
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Pro34Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

6-31324741-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324741
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324741
    reference: chr 6
allele count: 655
allele frequency: 9.246971793206653e-3
allele num: 70834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.100C>T
  hgvsp: ENSP00000405931.1:p.Pro34Ser
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-7C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.318G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-7C>T
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7333
  bin: 1.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 12181
  bin: 7.5e0
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 6006
  bin: 2.5e0
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 2.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 6065
  bin: 2.25e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11227
  bin: 1.25e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6595
  bin: 7.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3654
  bin: 3.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 1.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 4.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 9827
  bin: 2.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 3872
  bin: 1.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 9.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 4294
  bin: 6.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 4.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 5.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 4714
  bin: 3.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 5.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 8.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 7.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 8.25e1
  variant carriers: 30
hgvs: p.Pro34Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

6-31324742-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324742
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324742
    reference: chr 6
allele count: 13
allele frequency: 1.773049645390071e-4
allele num: 73320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-8A>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.319T>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.99A>T
  hgvsp: ENST00000434333.1:c.99A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-8A>T
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12309
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8631
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4258
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4341
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5068
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2530
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
hgvs: c.74-8A>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

6-31324742-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324742
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324742
    reference: chr 6
allele count: 60028
allele frequency: 8.187124931805783e-1
allele num: 73320
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.319T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.99A>G
  hgvsp: ENST00000434333.1:c.99A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-8A>G
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-8A>G
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 8631
  bin: 1.75e1
  variant carriers: 7990
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 2.5e0
  variant carriers: 3806
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 7.5e0
  variant carriers: 11730
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 4.25e1
  variant carriers: 968
genotype depth: GenotypeDepth
  all individuals: 12309
  bin: 1.25e1
  variant carriers: 11422
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.75e1
  variant carriers: 216
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 2.25e1
  variant carriers: 5589
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 5.25e1
  variant carriers: 386
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 4550
  bin: 2.75e1
  variant carriers: 3770
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.75e1
  variant carriers: 575
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.75e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 3.75e1
  variant carriers: 1538
genotype depth: GenotypeDepth
  all individuals: 2895
  bin: 3.25e1
  variant carriers: 2591
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 1.25e1
  variant carriers: 2176
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 6.75e1
  variant carriers: 1599
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 8.25e1
  variant carriers: 1055
genotype quality: GenotypeQuality
  all individuals: 4258
  bin: 3.25e1
  variant carriers: 4115
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 8.75e1
  variant carriers: 648
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 4.75e1
  variant carriers: 2835
genotype quality: GenotypeQuality
  all individuals: 5068
  bin: 2.25e1
  variant carriers: 4435
genotype quality: GenotypeQuality
  all individuals: 2161
  bin: 4.25e1
  variant carriers: 2076
genotype quality: GenotypeQuality
  all individuals: 2490
  bin: 7.5e0
  variant carriers: 2104
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 5.75e1
  variant carriers: 1338
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 3.75e1
  variant carriers: 3836
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 2.5e0
  variant carriers: 493
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 2.75e1
  variant carriers: 2514
genotype quality: GenotypeQuality
  all individuals: 1168
  bin: 7.75e1
  variant carriers: 1148
genotype quality: GenotypeQuality
  all individuals: 2538
  bin: 6.25e1
  variant carriers: 1884
genotype quality: GenotypeQuality
  all individuals: 4341
  bin: 1.75e1
  variant carriers: 4162
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 9.25e1
  variant carriers: 722
hgvs: c.74-8A>G
num of homozygotes: 25251
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

6-31324743-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324743
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324743
    reference: chr 6
allele count: 1
allele frequency: 1.418439716312057e-5
allele num: 70500
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.320G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-9C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-9C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.98C>T
  hgvsp: ENSP00000405931.1:p.Ser33Leu
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6582
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14635
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2525
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser33Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

6-31324743-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324743
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324743
    reference: chr 6
allele count: 613
allele frequency: 8.695035460992907e-3
allele num: 70500
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.98C>G
  hgvsp: ENSP00000405931.1:p.Ser33Ter
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.320G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-9C>G
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-9C>G
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 2.5e0
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 1.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 2.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 15049
  bin: 7.5e0
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 1.25e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 2.25e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 5.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 6582
  bin: 7.5e0
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 2.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 14635
  bin: 2.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 5.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 9.75e1
  variant carriers: 374
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 2525
  bin: 3.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 3.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 1.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 1.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 6879
  bin: 6.25e1
  variant carriers: 49
hgvs: p.Ser33Ter
num of homozygotes: 4
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

6-31324743-G-GCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324743
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324745
    reference: chr 6
allele count: 2673
allele frequency: 3.791489361702128e-2
allele num: 70500
alternate allele: GCA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-10_74-9insTG
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-10_95-9insTG
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.320_321insCA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.97_98insTG
  hgvsp: ENSP00000405931.1:p.Ser33LeufsTer9
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 3.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5034
  bin: 2.25e1
  variant carriers: 370
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 1.75e1
  variant carriers: 663
genotype depth: GenotypeDepth
  all individuals: 6911
  bin: 2.5e0
  variant carriers: 208
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5630
  bin: 2.75e1
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 15049
  bin: 7.5e0
  variant carriers: 889
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 1.25e1
  variant carriers: 990
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 8.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 5.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2525
  bin: 3.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 2.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 2.5e0
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 5.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 7.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 3.25e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 4.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 6879
  bin: 6.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 6582
  bin: 7.5e0
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 1.25e1
  variant carriers: 125
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 4.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 5186
  bin: 9.75e1
  variant carriers: 2682
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 7.75e1
  variant carriers: 44
hgvs: p.Ser33LeufsTer9
num of homozygotes: 79
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

6-31324746-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324746
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324746
    reference: chr 6
allele count: 1
allele frequency: 1.462587023927924e-5
allele num: 68372
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.323G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-12C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.95C>T
  hgvsp: ENSP00000405931.1:p.Ser32Phe
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-12C>T
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8061
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14395
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5950
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16129
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2887
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3610
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7855
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4426
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser32Phe
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

6-31324749-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324749
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324749
    reference: chr 6
allele count: 3971
allele frequency: 6.412906559865637e-2
allele num: 61922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-15C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.326G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.92C>A
  hgvsp: ENSP00000405931.1:p.Pro31His
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-15C>A
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8244
  bin: 2.5e0
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 14370
  bin: 1.25e1
  variant carriers: 1040
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 2.25e1
  variant carriers: 904
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 2.75e1
  variant carriers: 585
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 3.25e1
  variant carriers: 334
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15477
  bin: 7.5e0
  variant carriers: 543
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 1.75e1
  variant carriers: 1137
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 9.25e1
  variant carriers: 176
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 4.25e1
  variant carriers: 210
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 1.25e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 1.75e1
  variant carriers: 193
genotype quality: GenotypeQuality
  all individuals: 5815
  bin: 6.25e1
  variant carriers: 222
genotype quality: GenotypeQuality
  all individuals: 3588
  bin: 3.25e1
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 5.25e1
  variant carriers: 216
genotype quality: GenotypeQuality
  all individuals: 3879
  bin: 2.5e0
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 16181
  bin: 2.25e1
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 6.75e1
  variant carriers: 212
genotype quality: GenotypeQuality
  all individuals: 8336
  bin: 7.5e0
  variant carriers: 167
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.75e1
  variant carriers: 239
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 7.25e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 2.75e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 1064
  bin: 4.75e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 3.75e1
  variant carriers: 202
hgvs: p.Pro31His
num of homozygotes: 3
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

6-31324750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324750
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324750
    reference: chr 6
allele count: 846
allele frequency: 1.309962528258648e-2
allele num: 64582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.91C>T
  hgvsp: ENSP00000405931.1:p.Pro31Ser
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.327G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-16C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-16C>T
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8486
  bin: 2.5e0
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 2.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 2.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4753
  bin: 1.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15265
  bin: 1.25e1
  variant carriers: 337
genotype depth: GenotypeDepth
  all individuals: 16212
  bin: 7.5e0
  variant carriers: 297
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 2.5e0
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 7145
  bin: 6.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 7.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 6.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 8270
  bin: 7.5e0
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 4.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 3.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 4.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 1876
  bin: 1.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 1.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 3534
  bin: 2.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 9.75e1
  variant carriers: 407
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 3.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 18793
  bin: 2.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 5.25e1
  variant carriers: 55
hgvs: p.Pro31Ser
num of homozygotes: 10
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP

6-31324756-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324756
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324756
    reference: chr 6
allele count: 2623
allele frequency: 4.238164485377282e-2
allele num: 61890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-22C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-22C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.85C>T
  hgvsp: ENSP00000405931.1:p.Leu29Phe
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.333G>A
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 2.25e1
  variant carriers: 484
genotype depth: GenotypeDepth
  all individuals: 15083
  bin: 1.25e1
  variant carriers: 617
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 16972
  bin: 7.5e0
  variant carriers: 361
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 5.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 9692
  bin: 2.5e0
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.25e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 5125
  bin: 1.75e1
  variant carriers: 636
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 2.75e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 9739
  bin: 7.5e0
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 3813
  bin: 2.75e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 7.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 9.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 8.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 5.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 4553
  bin: 6.25e1
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 4.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 1.25e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 6.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 4119
  bin: 3.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 18429
  bin: 2.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 3461
  bin: 9.75e1
  variant carriers: 1861
genotype quality: GenotypeQuality
  all individuals: 2165
  bin: 3.75e1
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 2.5e0
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
  variant carriers: 44
hgvs: p.Leu29Phe
num of homozygotes: 204
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

6-31324761-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324761
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324761
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 60944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-27C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-27C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.80C>A
  hgvsp: ENSP00000405931.1:p.Ala27Glu
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.338G>T
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17444
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4274
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala27Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-31324764-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324764
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324764
    reference: chr 6
allele count: 2114
allele frequency: 3.553418947085323e-2
allele num: 59492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.77G>T
  hgvsp: ENSP00000405931.1:p.Arg26Leu
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.341C>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-30G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-30G>T
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 15367
  bin: 1.25e1
  variant carriers: 873
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 2.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4885
  bin: 1.75e1
  variant carriers: 545
genotype depth: GenotypeDepth
  all individuals: 17433
  bin: 7.5e0
  variant carriers: 857
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3785
  bin: 2.25e1
  variant carriers: 276
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 9859
  bin: 2.5e0
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 3.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 8.75e1
  variant carriers: 80
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 1.25e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 2.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 4.25e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 19110
  bin: 2.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.75e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 9.25e1
  variant carriers: 69
genotype quality: GenotypeQuality
  all individuals: 4949
  bin: 6.25e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 3387
  bin: 9.75e1
  variant carriers: 1630
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 7.25e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 2077
  bin: 3.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 2.5e0
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 1.75e1
  variant carriers: 94
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 5.75e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 6.75e1
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 9789
  bin: 7.5e0
  variant carriers: 60
hgvs: p.Arg26Leu
num of homozygotes: 69
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/6-31324774-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324774
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324774
    reference: chr 6
allele count: 32
allele frequency: 5.922854816021322e-4
allele num: 54028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.67G>T
  hgvsp: ENSP00000405931.1:p.Glu23Ter
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.351C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-40G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-40G>T
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14174
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2970
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10704
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18296
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4636
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3121
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16711
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3602
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 9.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4564
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2485
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4021
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu23Ter
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/6-31324776-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324776
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324776
    reference: chr 6
allele count: 365
allele frequency: 7.511524530786961e-3
allele num: 48592
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.353C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-42G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.65G>T
  hgvsp: ENSP00000405931.1:p.Arg22Leu
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-42G>T
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 2.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 18445
  bin: 7.5e0
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 1.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2942
  bin: 2.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13828
  bin: 1.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10636
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3626
  bin: 1.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 3.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 3675
  bin: 2.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 7.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 3.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 4629
  bin: 1.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 10368
  bin: 7.5e0
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 3985
  bin: 2.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 15406
  bin: 2.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 5.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 4.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 6.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 4.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 6.75e1
  variant carriers: 23
hgvs: p.Arg22Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

6-31324777-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324777
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324777
    reference: chr 6
allele count: 182
allele frequency: 3.691983122362869e-3
allele num: 49296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-43C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-43C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.354G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.64C>A
  hgvsp: ENST00000434333.1:c.64C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18820
  bin: 7.5e0
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 13867
  bin: 1.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11039
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1907
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 4.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 3.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 6.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 3445
  bin: 1.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 5.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 15924
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 10210
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4054
  bin: 1.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 9.75e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 4099
  bin: 3.25e1
  variant carriers: 10
hgvs: p.Arg22Arg
num of homozygotes: 1
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ

6-31324780-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324780
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324780
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 50732
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.357G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.61C>G
  hgvsp: ENSP00000405931.1:p.Arg21Gly
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-46C>G
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-46C>G
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19367
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3054
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10609
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4046
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3744
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16684
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg21Gly
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/6-31324781-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324781
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324781
    reference: chr 6
allele count: 2
allele frequency: 3.972352427107333e-5
allele num: 50348
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.358C>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.60G>T
  hgvsp: ENST00000434333.1:c.60G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-47G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-47G>T
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11727
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13149
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5013
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4414
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3760
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16521
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2411
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4022
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro20Pro
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

6-31324782-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324782
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324782
    reference: chr 6
allele count: 1
allele frequency: 1.987202416438138e-5
allele num: 50322
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.59C>G
  hgvsp: ENSP00000405931.1:p.Pro20Arg
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-48C>G
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.359G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-48C>G
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4660
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11735
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19549
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2836
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4039
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2942
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4975
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3754
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10668
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro20Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

6-31324783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324783
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324783
    reference: chr 6
allele count: 1
allele frequency: 1.992825827022718e-5
allele num: 50180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-49C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.360G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-49C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.58C>T
  hgvsp: ENSP00000405931.1:p.Pro20Ser
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13071
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11732
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10659
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16777
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4797
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro20Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-31324783-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324783
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324783
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 50180
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.360G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-49C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.58C>A
  hgvsp: ENSP00000405931.1:p.Pro20Thr
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-49C>A
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11732
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3751
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4797
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10659
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4025
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4433
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro20Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

6-31324786-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324786
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324786
    reference: chr 6
allele count: 86
allele frequency: 1.781644914025275e-3
allele num: 48270
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-52G>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.363C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.55G>A
  hgvsp: ENSP00000405931.1:p.Glu19Lys
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-52G>A
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19664
  bin: 7.5e0
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12986
  bin: 1.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 11687
  bin: 2.5e0
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 1.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10637
  bin: 7.5e0
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 4847
  bin: 1.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 4.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 2353
  bin: 3.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 6.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4240
  bin: 3.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1926
  bin: 2.5e0
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 3920
  bin: 2.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 4.25e1
  variant carriers: 13
hgvs: p.Glu19Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

6-31324788-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324788
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324788
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 44072
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-54A>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.365T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.53A>T
  hgvsp: ENSP00000405931.1:p.Glu18Val
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-54A>T
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19026
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8921
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5748
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10415
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 331
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu18Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

6-31324788-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324788
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324788
    reference: chr 6
allele count: 12342
allele frequency: 2.800417498638592e-1
allele num: 44072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-54A>G
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-54A>G
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.53A>G
  hgvsp: ENSP00000405931.1:p.Glu18Gly
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.365T>C
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 2.75e1
  variant carriers: 596
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.25e1
  variant carriers: 431
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 2.5e0
  variant carriers: 4269
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 1.75e1
  variant carriers: 2382
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 19026
  bin: 7.5e0
  variant carriers: 8082
genotype depth: GenotypeDepth
  all individuals: 13771
  bin: 1.25e1
  variant carriers: 5115
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 3.75e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 2.25e1
  variant carriers: 986
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 10415
  bin: 2.5e0
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 4.25e1
  variant carriers: 293
genotype quality: GenotypeQuality
  all individuals: 8921
  bin: 2.25e1
  variant carriers: 1676
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 8.25e1
  variant carriers: 319
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 3.25e1
  variant carriers: 716
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.75e1
  variant carriers: 362
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 6.25e1
  variant carriers: 394
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.25e1
  variant carriers: 151
genotype quality: GenotypeQuality
  all individuals: 10960
  bin: 9.75e1
  variant carriers: 9903
genotype quality: GenotypeQuality
  all individuals: 3736
  bin: 1.75e1
  variant carriers: 2657
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 9.25e1
  variant carriers: 510
genotype quality: GenotypeQuality
  all individuals: 5748
  bin: 7.5e0
  variant carriers: 1770
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 2.75e1
  variant carriers: 558
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.75e1
  variant carriers: 410
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 5.25e1
  variant carriers: 408
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 3.75e1
  variant carriers: 483
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 6.75e1
  variant carriers: 301
hgvs: p.Glu18Gly
num of homozygotes: 1626
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

6-31324790-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324790
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324790
    reference: chr 6
allele count: 12675
allele frequency: 2.860786349478626e-1
allele num: 44306
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.367A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.51T>C
  hgvsp: ENST00000434333.1:c.51T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-56T>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-56T>C
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 2.25e1
  variant carriers: 967
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 9.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 417
genotype depth: GenotypeDepth
  all individuals: 5622
  bin: 1.75e1
  variant carriers: 2436
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 6.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 13932
  bin: 1.25e1
  variant carriers: 5272
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 215
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 8620
  bin: 2.5e0
  variant carriers: 4067
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 3.75e1
  variant carriers: 308
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 19035
  bin: 7.5e0
  variant carriers: 8047
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.75e1
  variant carriers: 613
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 1.25e1
  variant carriers: 1654
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 3.25e1
  variant carriers: 713
genotype quality: GenotypeQuality
  all individuals: 5735
  bin: 7.5e0
  variant carriers: 1767
genotype quality: GenotypeQuality
  all individuals: 10960
  bin: 9.75e1
  variant carriers: 9902
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 3.75e1
  variant carriers: 482
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 8.75e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 6.75e1
  variant carriers: 301
genotype quality: GenotypeQuality
  all individuals: 2104
  bin: 2.75e1
  variant carriers: 554
genotype quality: GenotypeQuality
  all individuals: 8772
  bin: 2.25e1
  variant carriers: 1673
genotype quality: GenotypeQuality
  all individuals: 10617
  bin: 2.5e0
  variant carriers: 82
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 8.25e1
  variant carriers: 318
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 1.75e1
  variant carriers: 2656
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.75e1
  variant carriers: 280
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 5.25e1
  variant carriers: 410
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 4.75e1
  variant carriers: 412
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 6.25e1
  variant carriers: 393
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 9.25e1
  variant carriers: 508
hgvs: p.Pro17Pro
num of homozygotes: 1735
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-31324798-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324798
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324798
    reference: chr 6
allele count: 25
allele frequency: 5.09808719768343e-4
allele num: 49038
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.74-64G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.375C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.95-64G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.43G>T
  hgvsp: ENSP00000405931.1:p.Ala15Ser
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13578
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12406
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 20036
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3503
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12319
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3570
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2883
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3800
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 20505
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2686
  bin: 6.25e1
  variant carriers: 2
hgvs: p.Ala15Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/6-31324803-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324803
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324803
    reference: chr 6
allele count: 1
allele frequency: 1.993302503587944e-5
allele num: 50168
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+60G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.380C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.38G>T
  hgvsp: ENSP00000405931.1:p.Gly13Val
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+60G>T
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13704
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12916
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3554
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1603
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly13Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-31324807-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324807
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324808
    reference: chr 6
allele count: 4
allele frequency: 8.152949329419917e-5
allele num: 49062
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.33_34insT
  hgvsp: ENSP00000405931.1:p.Gly12TrpfsTer7
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+55_73+56insT
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.384_385insA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+55_94+56insT
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13610
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11572
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20781
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13141
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22675
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly12TrpfsTer7
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

6-31324807-C-CG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324807
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324808
    reference: chr 6
allele count: 9
allele frequency: 1.834413599119482e-4
allele num: 49062
alternate allele: CG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.33_34insC
  hgvsp: ENSP00000405931.1:p.Gly12ArgfsTer7
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+55_94+56insC
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+55_73+56insC
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.384_385insG
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11572
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3984
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20781
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13610
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22675
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13141
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly12ArgfsTer7
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

6-31324808-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324808
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324808
    reference: chr 6
allele count: 14
allele frequency: 2.871559256676375e-4
allele num: 48754
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.385T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.33A>C
  hgvsp: ENST00000434333.1:c.33A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+55A>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+55A>C
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11427
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20880
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13599
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3964
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3336
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23146
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1812
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13017
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 6.25e1
  variant carriers: 2
hgvs: p.Ala11Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-31324811-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324811
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324811
    reference: chr 6
allele count: 1
allele frequency: 1.981846288001903e-5
allele num: 50458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.30C>A
  hgvsp: ENST00000434333.1:c.30C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+52C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.388G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+52C>A
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10976
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13577
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3423
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23024
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3472
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1811
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr10Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

6-31324813-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324813
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324813
    reference: chr 6
allele count: 14
allele frequency: 2.892801057938673e-4
allele num: 48396
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+50A>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.390T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.28A>C
  hgvsp: ENSP00000405931.1:p.Thr10Pro
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+50A>C
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1494
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13493
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 10499
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21104
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2888
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3345
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21033
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2402
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr10Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/6-31324816-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324816
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324816
    reference: chr 6
allele count: 2
allele frequency: 4.038772213247173e-5
allele num: 49520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+47G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+47G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.393C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.25G>T
  hgvsp: ENSP00000405931.1:p.Gly9Trp
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13552
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9974
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2728
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2713
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13773
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3016
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19915
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly9Trp
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

6-31324819-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324819
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324819
    reference: chr 6
allele count: 758
allele frequency: 1.644108971022037e-2
allele num: 46104
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+44G>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.22G>A
  hgvsp: ENSP00000405931.1:p.Glu8Lys
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.396C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+44G>A
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 4.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 1.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 2.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 13857
  bin: 1.25e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 20661
  bin: 7.5e0
  variant carriers: 336
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9336
  bin: 2.5e0
  variant carriers: 162
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 17120
  bin: 2.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 6.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 7.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 13344
  bin: 7.5e0
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 2.5e0
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3099
  bin: 1.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 2.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 3.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 9.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 4.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 8.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 3500
  bin: 1.75e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 4.75e1
  variant carriers: 14
hgvs: p.Glu8Lys
num of homozygotes: 14
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

6-31324820-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324820
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324820
    reference: chr 6
allele count: 1889
allele frequency: 3.989271836458861e-2
allele num: 47352
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+43C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.397G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.21C>A
  hgvsp: ENSP00000405931.1:p.Ser7Arg
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+43C>A
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 1.75e1
  variant carriers: 442
genotype depth: GenotypeDepth
  all individuals: 14149
  bin: 1.25e1
  variant carriers: 1023
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 2.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 3167
  bin: 2.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20425
  bin: 7.5e0
  variant carriers: 1330
genotype depth: GenotypeDepth
  all individuals: 8725
  bin: 2.5e0
  variant carriers: 587
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.75e1
  variant carriers: 117
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 4.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 6.75e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 1.75e1
  variant carriers: 311
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 8.25e1
  variant carriers: 163
genotype quality: GenotypeQuality
  all individuals: 3042
  bin: 2.75e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 4577
  bin: 2.5e0
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 3243
  bin: 3.25e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 3160
  bin: 9.75e1
  variant carriers: 1143
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 9.25e1
  variant carriers: 147
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 3.75e1
  variant carriers: 89
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 7.25e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 15815
  bin: 2.25e1
  variant carriers: 177
genotype quality: GenotypeQuality
  all individuals: 12215
  bin: 7.5e0
  variant carriers: 300
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 127
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 5.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 1.25e1
  variant carriers: 187
hgvs: p.Ser7Arg
num of homozygotes: 38
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/6-31324823-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324823
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324823
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 47598
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+40G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.400C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+40G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.18G>T
  hgvsp: ENSP00000405931.1:p.Arg6Ser
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8722
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15855
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3696
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13893
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Arg6Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

6-31324823-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324823
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324823
    reference: chr 6
allele count: 12
allele frequency: 2.52111433253498e-4
allele num: 47598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.18G>A
  hgvsp: ENST00000434333.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+40G>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.400C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+40G>A
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19903
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14239
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15855
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2622
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13893
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Arg6Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

6-31324827-CCG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324827
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324825
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 45532
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.12_13delCG
  hgvsp: ENSP00000405931.1:p.Gly5GlufsTer13
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+34_94+35delCG
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.405_406delCG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+34_73+35delCG
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 19433
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11994
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5947
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13384
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly5GlufsTer13
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: CCG
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

6-31324828-CGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324828
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324826
    reference: chr 6
allele count: 1
allele frequency: 2.180454406698356e-5
allele num: 45862
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.406_407delGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+33_94+34delCC
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+33_73+34delCC
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.11_12delCC
  hgvsp: ENSP00000405931.1:p.Ala4GlyfsTer14
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3702
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11971
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13660
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3950
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5643
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3295
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2095
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala4GlyfsTer14
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: CGG
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP

6-31324829-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324829
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324829
    reference: chr 6
allele count: 35298
allele frequency: 6.104174592743749e-1
allele num: 57826
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+34C>G
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.12C>G
  hgvsp: ENST00000434333.1:c.12C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.406G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+34C>G
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 444
genotype depth: GenotypeDepth
  all individuals: 17009
  bin: 7.5e0
  variant carriers: 12750
genotype depth: GenotypeDepth
  all individuals: 14282
  bin: 1.25e1
  variant carriers: 10609
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 1.75e1
  variant carriers: 6116
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.75e1
  variant carriers: 1164
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 2.25e1
  variant carriers: 2765
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 2.5e0
  variant carriers: 5553
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 642
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 9.75e1
  variant carriers: 932
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 351
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 161
genotype quality: GenotypeQuality
  all individuals: 6579
  bin: 2.25e1
  variant carriers: 4028
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 4.25e1
  variant carriers: 1078
genotype quality: GenotypeQuality
  all individuals: 3749
  bin: 7.5e0
  variant carriers: 2398
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.25e1
  variant carriers: 349
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 2.75e1
  variant carriers: 1931
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 1224
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.25e1
  variant carriers: 483
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 3.25e1
  variant carriers: 3049
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 6.25e1
  variant carriers: 817
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.75e1
  variant carriers: 304
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 9.25e1
  variant carriers: 518
genotype quality: GenotypeQuality
  all individuals: 5285
  bin: 2.5e0
  variant carriers: 307
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 3.75e1
  variant carriers: 2343
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 6.75e1
  variant carriers: 660
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 1.75e1
  variant carriers: 4219
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 1533
genotype quality: GenotypeQuality
  all individuals: 14756
  bin: 9.75e1
  variant carriers: 14197
hgvs: p.Ala4Ala
num of homozygotes: 11238
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

6-31324829-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324829
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324829
    reference: chr 6
allele count: 637
allele frequency: 1.101580603880607e-2
allele num: 57826
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.12C>A
  hgvsp: ENST00000434333.1:c.12C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+34C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+34C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.406G>T
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17009
  bin: 7.5e0
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 2.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 1.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 2.5e0
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14282
  bin: 1.25e1
  variant carriers: 235
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 5285
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 3749
  bin: 7.5e0
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 4579
  bin: 1.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 7.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 6.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 9.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 5.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 3.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 1.25e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 6579
  bin: 2.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 3.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 7.75e1
  variant carriers: 26
hgvs: p.Ala4Ala
num of homozygotes: 9
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

6-31324830-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324830
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324830
    reference: chr 6
allele count: 35667
allele frequency: 6.17311087265049e-1
allele num: 57778
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+33C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+33C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.407G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.11C>T
  hgvsp: ENSP00000405931.1:p.Ala4Val
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 1173
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.25e1
  variant carriers: 638
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 968
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 2.5e0
  variant carriers: 5890
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 219
genotype depth: GenotypeDepth
  all individuals: 14127
  bin: 1.25e1
  variant carriers: 10569
genotype depth: GenotypeDepth
  all individuals: 17034
  bin: 7.5e0
  variant carriers: 12840
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 1.75e1
  variant carriers: 6196
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 442
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 2.25e1
  variant carriers: 2751
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 341
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 1106
genotype quality: GenotypeQuality
  all individuals: 3864
  bin: 7.5e0
  variant carriers: 2465
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 2.75e1
  variant carriers: 1991
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.75e1
  variant carriers: 547
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 3.25e1
  variant carriers: 3137
genotype quality: GenotypeQuality
  all individuals: 4592
  bin: 1.75e1
  variant carriers: 4305
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 1269
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 6.75e1
  variant carriers: 686
genotype quality: GenotypeQuality
  all individuals: 6715
  bin: 2.25e1
  variant carriers: 4157
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 3.75e1
  variant carriers: 2413
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 5.75e1
  variant carriers: 622
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 4.75e1
  variant carriers: 1571
genotype quality: GenotypeQuality
  all individuals: 5039
  bin: 2.5e0
  variant carriers: 312
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 6.25e1
  variant carriers: 847
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 1.25e1
  variant carriers: 2155
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.75e1
  variant carriers: 308
genotype quality: GenotypeQuality
  all individuals: 14350
  bin: 9.75e1
  variant carriers: 13929
hgvs: p.Ala4Val
num of homozygotes: 11556
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-31324830-G-GCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324830
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324832
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 57778
alternate allele: GCA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+31_73+32dupTG
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.408_409dupCA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.9_10dupTG
  hgvsp: ENSP00000405931.1:p.Ala4ValfsTer38
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+31_94+32dupTG
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: frameshift
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17034
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7686
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5039
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3864
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6715
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4592
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala4ValfsTer38
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/6-31324831-C-CAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324831
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324833
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 51956
alternate allele: CAA
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.409_410insAA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+31_73+32insTT
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.9_10insTT
  hgvsp: ENSP00000405931.1:p.Ala4LeufsTer38
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+31_94+32insTT
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5772
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14973
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala4LeufsTer38
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

6-31324839-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324839
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324839
    reference: chr 6
allele count: 2
allele frequency: 4.256224728665674e-5
allele num: 46990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.2T>C
  hgvsp: ENSP00000405931.1:p.Met1?
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+24T>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.416A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+24T>C
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: start lost
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12688
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3540
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3923
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10924
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 112
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genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9797
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-31324845-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324845
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324845
    reference: chr 6
allele count: 1
allele frequency: 2.170986930658678e-5
allele num: 46062
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+18G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-5G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+18G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.422C>A
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11868
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5744
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5721
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-31324847-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324847
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324847
    reference: chr 6
allele count: 13484
allele frequency: 2.538403614457831e-1
allele num: 53120
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+16G>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+16G>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-7G>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.424C>G
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 4.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 12714
  bin: 7.5e0
  variant carriers: 5850
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.25e1
  variant carriers: 326
genotype depth: GenotypeDepth
  all individuals: 12454
  bin: 1.25e1
  variant carriers: 4835
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 2.5e0
  variant carriers: 2414
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 1.75e1
  variant carriers: 3020
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 2.75e1
  variant carriers: 754
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5411
  bin: 2.25e1
  variant carriers: 1647
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 3.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 9.75e1
  variant carriers: 284
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 4.75e1
  variant carriers: 509
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 5.25e1
  variant carriers: 418
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.75e1
  variant carriers: 308
genotype quality: GenotypeQuality
  all individuals: 5576
  bin: 2.5e0
  variant carriers: 279
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 8.75e1
  variant carriers: 296
genotype quality: GenotypeQuality
  all individuals: 2916
  bin: 3.25e1
  variant carriers: 870
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 6.75e1
  variant carriers: 327
genotype quality: GenotypeQuality
  all individuals: 4281
  bin: 7.5e0
  variant carriers: 1074
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 2.75e1
  variant carriers: 662
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 1.25e1
  variant carriers: 893
genotype quality: GenotypeQuality
  all individuals: 7484
  bin: 2.25e1
  variant carriers: 1197
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 4.25e1
  variant carriers: 352
genotype quality: GenotypeQuality
  all individuals: 2683
  bin: 1.75e1
  variant carriers: 1533
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.25e1
  variant carriers: 315
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 8.25e1
  variant carriers: 380
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 3.75e1
  variant carriers: 621
genotype quality: GenotypeQuality
  all individuals: 10564
  bin: 9.75e1
  variant carriers: 8972
num of homozygotes: 2115
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum

http://identifiers.org/exac.variant/6-31324851-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324851
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324852
    reference: chr 6
allele count: 21643
allele frequency: 3.711840570762159e-1
allele num: 58308
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-12dupG
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+11dupG
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.431dupC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+11dupG
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 12681
  bin: 1.25e1
  variant carriers: 6936
genotype depth: GenotypeDepth
  all individuals: 15369
  bin: 7.5e0
  variant carriers: 8938
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 2.5e0
  variant carriers: 4174
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 230
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 2.25e1
  variant carriers: 2469
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 1.75e1
  variant carriers: 4574
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 2.75e1
  variant carriers: 1125
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 618
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.25e1
  variant carriers: 518
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 7.75e1
  variant carriers: 493
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 3.25e1
  variant carriers: 1782
genotype quality: GenotypeQuality
  all individuals: 5791
  bin: 2.5e0
  variant carriers: 447
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 4.75e1
  variant carriers: 871
genotype quality: GenotypeQuality
  all individuals: 6944
  bin: 2.25e1
  variant carriers: 2643
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 692
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 3.75e1
  variant carriers: 1187
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 4.25e1
  variant carriers: 696
genotype quality: GenotypeQuality
  all individuals: 4551
  bin: 7.5e0
  variant carriers: 2053
genotype quality: GenotypeQuality
  all individuals: 4089
  bin: 1.75e1
  variant carriers: 3066
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 6.75e1
  variant carriers: 545
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 8.25e1
  variant carriers: 608
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 1.25e1
  variant carriers: 1891
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.25e1
  variant carriers: 565
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 5.75e1
  variant carriers: 511
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.75e1
  variant carriers: 426
genotype quality: GenotypeQuality
  all individuals: 11273
  bin: 9.75e1
  variant carriers: 9993
num of homozygotes: 4759
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

6-31324851-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324851
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324852
    reference: chr 6
allele count: 853
allele frequency: 1.462921039994512e-2
allele num: 58308
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-12_-11insA
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.428_429insT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+11_73+12insA
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+11_94+12insA
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 9.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 15369
  bin: 7.5e0
  variant carriers: 458
genotype depth: GenotypeDepth
  all individuals: 12681
  bin: 1.25e1
  variant carriers: 354
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 2.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 2.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 2.5e0
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 1.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 11273
  bin: 9.75e1
  variant carriers: 665
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 4.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 5791
  bin: 2.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 3024
  bin: 3.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 4089
  bin: 1.75e1
  variant carriers: 97
genotype quality: GenotypeQuality
  all individuals: 6944
  bin: 2.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 3.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 5.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 3824
  bin: 6.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 4551
  bin: 7.5e0
  variant carriers: 120
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 2.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 1.25e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 8.25e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 9.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 5.25e1
  variant carriers: 32
num of homozygotes: 29
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

6-31324852-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324852
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324853
    reference: chr 6
allele count: 2
allele frequency: 8.514986376021798e-5
allele num: 23488
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+10_73+11insA
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-13_-12insA
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+10_94+11insA
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.429_430insT
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18988
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

6-31324852-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324852
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324852
    reference: chr 6
allele count: 2
allele frequency: 8.514986376021798e-5
allele num: 23488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-12G>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.429C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+11G>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+11G>A
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8758
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7456
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18988
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3473
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1057
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2240
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4347
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-31324853-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324853
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324854
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 66308
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-14_-13insT
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.430_431insA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+9_94+10insT
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+9_73+10insT
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8523
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12598
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5938
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2044
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1389
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

6-31324853-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324853
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324853
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 66308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-13G>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.430C>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+10G>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+10G>C
  variant of: http://identifiers.org/hgnc/4932
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12598
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7032
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6502
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4558
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8346
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2433
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

http://identifiers.org/exac.variant/6-31324854-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324854
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324855
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 66212
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+8_94+9insT
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-15_-14insT
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+8_73+9insT
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.431_432insA
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14759
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3195
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: DP

6-31324855-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324855
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324855
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 62546
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+8C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.432G>A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-15C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+8C>T
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8695
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14715
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12957
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4082
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1369
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 9.75e1
  variant carriers: 0
hgvs: c.73+8C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

6-31324856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324856
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324856
    reference: chr 6
allele count: 1
allele frequency: 1.549955051303512e-5
allele num: 64518
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73+7G>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-16G>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94+7G>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.433C>T
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12486
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14753
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1433
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1946
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8836
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13733
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7064
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3329
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 9.25e1
  variant carriers: 0
hgvs: c.73+7G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

6-31324863-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324863
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324863
    reference: chr 6
allele count: 3
allele frequency: 4.520114509567576e-5
allele num: 66370
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.440C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-23G>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.94G>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.73G>A
  hgvsp: ENSP00000399168.2:p.Gly25Ser
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14431
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9239
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12058
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9062
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8795
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly25Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

6-31324864-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324864
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324864
    reference: chr 6
allele count: 1495
allele frequency: 2.351590272753012e-2
allele num: 63574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-24C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.93C>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.441G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.72C>T
  hgvsp: ENST00000412585.2:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11898
  bin: 1.25e1
  variant carriers: 733
genotype depth: GenotypeDepth
  all individuals: 14193
  bin: 7.5e0
  variant carriers: 1163
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 2.25e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3343
  bin: 2.75e1
  variant carriers: 111
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 3.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 8653
  bin: 2.5e0
  variant carriers: 691
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 1.75e1
  variant carriers: 396
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3288
  bin: 9.75e1
  variant carriers: 957
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.25e1
  variant carriers: 163
genotype quality: GenotypeQuality
  all individuals: 9052
  bin: 6.25e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 13052
  bin: 2.25e1
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.75e1
  variant carriers: 71
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 6.75e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 3566
  bin: 3.25e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 4.25e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 8215
  bin: 7.5e0
  variant carriers: 265
genotype quality: GenotypeQuality
  all individuals: 3166
  bin: 2.5e0
  variant carriers: 88
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 5.75e1
  variant carriers: 114
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 7.75e1
  variant carriers: 157
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 1.75e1
  variant carriers: 279
genotype quality: GenotypeQuality
  all individuals: 2559
  bin: 3.75e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 1.25e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 4.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 9.25e1
  variant carriers: 81
hgvs: c.72C>T
num of homozygotes: 20
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

6-31324876-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324876
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324876
    reference: chr 6
allele count: 2
allele frequency: 3.007066606525334e-5
allele num: 66510
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.81C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.60C>A
  hgvsp: ENST00000412585.2:c.60C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-36C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.453G>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10452
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9324
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3545
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3821
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10597
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12916
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9727
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3032
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr20Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD

6-31324880-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324880
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324880
    reference: chr 6
allele count: 1
allele frequency: 1.508568670045861e-5
allele num: 66288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.77T>C
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.457A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.56T>C
  hgvsp: ENSP00000399168.2:p.Leu19Pro
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-40T>C
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9653
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12001
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 6.75e1
  variant carriers: 1
hgvs: p.Leu19Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-31324880-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324880
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324880
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 66288
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.457A>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-40T>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.56T>A
  hgvsp: ENSP00000399168.2:p.Leu19Gln
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.77T>A
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10949
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9227
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9653
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3787
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2383
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2514
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12001
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu19Gln
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

6-31324883-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324883
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324883
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 65656
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.53C>A
  hgvsp: ENSP00000399168.2:p.Ala18Asp
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.74C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-43C>A
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.460G>T
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3780
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9999
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala18Asp
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/6-31324884-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324884
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324884
    reference: chr 6
allele count: 1
allele frequency: 1.526344709689236e-5
allele num: 65516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.73G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-44G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.461C>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.52G>T
  hgvsp: ENSP00000399168.2:p.Ala18Ser
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9113
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14316
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3206
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1022
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3721
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10215
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala18Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/6-31324885-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324885
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324885
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 66134
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.51G>T
  hgvsp: ENST00000412585.2:c.51G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-45G>T
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.462C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.72G>T
  variant of: http://identifiers.org/hgnc/4932
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14293
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9089
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2392
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2902
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9199
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2528
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10672
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu17Leu
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-31324886-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31324886
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31324887
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 65970
alternate allele: AC
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000399168
  ensembl transcript: ENST00000412585
  gene symbol: HLA-B
  hgvsc: ENST00000412585.2:c.49_50insG
  hgvsp: ENSP00000399168.2:p.Leu17ArgfsTer82
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000234745
  ensembl transcript: ENST00000498007
  gene symbol: HLA-B
  hgvsc: ENST00000498007.1:n.70_71insG
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000234745
  ensembl protein: ENSP00000405931
  ensembl transcript: ENST00000434333
  gene symbol: HLA-B
  hgvsc: ENST00000434333.1:c.-47_-46insG
  variant of: http://identifiers.org/hgnc/4932
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000271581
  ensembl transcript: ENST00000603274
  gene symbol: XXbac-BPG248L24.12
  hgvsc: ENST00000603274.1:n.463_464insC
canonical: true
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9036
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4036
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9249
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3003
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2389
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu17ArgfsTer82
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 1903
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.098635886673662e-5
allele num: 47650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6900
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.968239833778569e-4
allele num: 6738
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.29e-1

MQ
type: SiteQuality
SIO_000300: 4.065e1

MQRankSum
type: SiteQuality
SIO_000300: -1.839e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.66e-2

QD
type: SiteQuality
SIO_000300: 9.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.801e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.237536e6

BaseQRankSum
type: SiteQuality
SIO_000300: 5.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

GenotypeQuality
all individuals: 1087
bin: 7.25e1
variant carriers: 151

GenotypeQuality
all individuals: 14030
bin: 9.75e1
variant carriers: 2947

GenotypeQuality
all individuals: 747
bin: 4.75e1
variant carriers: 117

South Asian
type: Population
allele count: 968
allele frequency: 7.423312883435583e-2
allele num: 13040
num of homozygotes: 25

East Asian
type: Population
allele count: 9
allele frequency: 1.424050632911392e-3
allele num: 6320
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 148
allele frequency: 3.342366757000903e-2
allele num: 4428
num of homozygotes: 1

African
type: Population
allele count: 137
allele frequency: 2.104454685099846e-2
allele num: 6510
num of homozygotes: 0

Latino
type: Population
allele count: 161
allele frequency: 1.662879570336707e-2
allele num: 9682
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 2503
allele frequency: 5.597048300536673e-2
allele num: 44720
num of homozygotes: 59

Other
type: Population
allele count: 25
allele frequency: 3.943217665615142e-2
allele num: 634
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

DP
type: SiteQuality
SIO_000300: 1.249133e6

VQSLOD
type: SiteQuality
SIO_000300: 2.626e1

MQ
type: SiteQuality
SIO_000300: 4.066e1

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.795e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

GenotypeQuality
all individuals: 711
bin: 5.25e1
variant carriers: 294

GenotypeQuality
all individuals: 974
bin: 8.25e1
variant carriers: 185

GenotypeQuality
all individuals: 1087
bin: 7.25e1
variant carriers: 190

European (Non-Finnish)
type: Population
allele count: 7795
allele frequency: 1.743067978533095e-1
allele num: 44720
num of homozygotes: 1021

South Asian
type: Population
allele count: 2798
allele frequency: 2.145705521472393e-1
allele num: 13040
num of homozygotes: 356

East Asian
type: Population
allele count: 694
allele frequency: 1.098101265822785e-1
allele num: 6320
num of homozygotes: 51

African
type: Population
allele count: 592
allele frequency: 9.093701996927804e-2
allele num: 6510
num of homozygotes: 67

European (Finnish)
type: Population
allele count: 894
allele frequency: 2.018970189701897e-1
allele num: 4428
num of homozygotes: 111

Other
type: Population
allele count: 119
allele frequency: 1.876971608832808e-1
allele num: 634
num of homozygotes: 15

Latino
type: Population
allele count: 1454
allele frequency: 1.501755835571163e-1
allele num: 9682
num of homozygotes: 80

FS
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.795e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

MQ
type: SiteQuality
SIO_000300: 4.066e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.626e1

DP
type: SiteQuality
SIO_000300: 1.249133e6

GenotypeQuality
all individuals: 3384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12912
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.958e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

MQRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 1.111091e6

QD
type: SiteQuality
SIO_000300: 1.173e1

MQ
type: SiteQuality
SIO_000300: 5.388e1

GenotypeQuality
all individuals: 3070
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.27004449287206e-5
allele num: 44052
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.132e0

DP
type: SiteQuality
SIO_000300: 1.072398e6

QD
type: SiteQuality
SIO_000300: 9.119999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 4.222e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.289377289377289e-5
allele num: 43680
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.469e0

DP
type: SiteQuality
SIO_000300: 1.06547e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.141e0

MQRankSum
type: SiteQuality
SIO_000300: -1.397e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-2

QD
type: SiteQuality
SIO_000300: 2.642e1

VQSLOD
type: SiteQuality
SIO_000300: -1.308e0

MQ
type: SiteQuality
SIO_000300: 3.926e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.428e0

GenotypeQuality
all individuals: 329
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 610
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1061
bin: 4.25e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12506
num of homozygotes: 0

Latino
type: Population
allele count: 12
allele frequency: 1.252348152786475e-3
allele num: 9582
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.592356687898089e-3
allele num: 628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4208
num of homozygotes: 0

African
type: Population
allele count: 47
allele frequency: 7.544141252006421e-3
allele num: 6230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.998846597462514e-4
allele num: 43350
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.268e0

FS
type: SiteQuality
SIO_000300: 5.6486e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.68e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

DP
type: SiteQuality
SIO_000300: 1.057961e6

MQ
type: SiteQuality
SIO_000300: 3.97e1

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 55

GenotypeQuality
all individuals: 1180
bin: 5.25e1
variant carriers: 44

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 44

Latino
type: Population
allele count: 381
allele frequency: 4.338419494420406e-2
allele num: 8782
num of homozygotes: 0

East Asian
type: Population
allele count: 151
allele frequency: 2.758494702228717e-2
allele num: 5474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 250
allele frequency: 6.304216259834577e-3
allele num: 39656
num of homozygotes: 0

South Asian
type: Population
allele count: 194
allele frequency: 1.670397795763734e-2
allele num: 11614
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 1.045296167247387e-2
allele num: 574
num of homozygotes: 0

African
type: Population
allele count: 52
allele frequency: 8.88585099111415e-3
allele num: 5852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.637130801687763e-4
allele num: 3792
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.92e-1

MQ
type: SiteQuality
SIO_000300: 4.134e1

VQSLOD
type: SiteQuality
SIO_000300: -2.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

FS
type: SiteQuality
SIO_000300: 2.349e0

QD
type: SiteQuality
SIO_000300: 3.26e0

DP
type: SiteQuality
SIO_000300: 1.011072e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

GenotypeQuality
all individuals: 4750
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.689473401108063e-5
allele num: 37182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3524
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.22e-2

DP
type: SiteQuality
SIO_000300: 9.92494e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 5.37e0

VQSLOD
type: SiteQuality
SIO_000300: -6.729000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

MQ
type: SiteQuality
SIO_000300: 5.067e1

GenotypeQuality
all individuals: 614
bin: 9.25e1
variant carriers: 57

GenotypeQuality
all individuals: 1245
bin: 7.75e1
variant carriers: 43

GenotypeQuality
all individuals: 5271
bin: 9.75e1
variant carriers: 2688

Other
type: Population
allele count: 25
allele frequency: 4.251700680272109e-2
allele num: 588
num of homozygotes: 1

African
type: Population
allele count: 153
allele frequency: 2.618966107497432e-2
allele num: 5842
num of homozygotes: 6

East Asian
type: Population
allele count: 18
allele frequency: 3.435114503816794e-3
allele num: 5240
num of homozygotes: 0

South Asian
type: Population
allele count: 265
allele frequency: 2.244241192411924e-2
allele num: 11808
num of homozygotes: 7

Latino
type: Population
allele count: 272
allele frequency: 2.982456140350877e-2
allele num: 9120
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 171
allele frequency: 4.492905937992643e-2
allele num: 3806
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 1847
allele frequency: 4.619809904952477e-2
allele num: 39980
num of homozygotes: 58

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.007e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

QD
type: SiteQuality
SIO_000300: 1.361e1

MQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

MQ
type: SiteQuality
SIO_000300: 4.103e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

FS
type: SiteQuality
SIO_000300: 5.91e-1

DP
type: SiteQuality
SIO_000300: 9.81577e5

GenotypeQuality
all individuals: 678
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 12
allele frequency: 2.158273381294964e-3
allele num: 5560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.753e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQ
type: SiteQuality
SIO_000300: 3.878e1

DP
type: SiteQuality
SIO_000300: 9.2115e5

FS
type: SiteQuality
SIO_000300: 4.0356e1

QD
type: SiteQuality
SIO_000300: 1.86e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1982
bin: 6.75e1
variant carriers: 34

GenotypeQuality
all individuals: 3199
bin: 2.75e1
variant carriers: 20

GenotypeQuality
all individuals: 2876
bin: 9.75e1
variant carriers: 327

European (Non-Finnish)
type: Population
allele count: 159
allele frequency: 4.370052770448549e-3
allele num: 36384
num of homozygotes: 0

African
type: Population
allele count: 31
allele frequency: 5.615942028985507e-3
allele num: 5520
num of homozygotes: 0

Latino
type: Population
allele count: 268
allele frequency: 3.176861071597914e-2
allele num: 8436
num of homozygotes: 0

South Asian
type: Population
allele count: 96
allele frequency: 8.4985835694051e-3
allele num: 11296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

East Asian
type: Population
allele count: 101
allele frequency: 1.955848179705654e-2
allele num: 5164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3496
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.508e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.476e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.333e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

QD
type: SiteQuality
SIO_000300: 4.09e0

DP
type: SiteQuality
SIO_000300: 9.22334e5

MQ
type: SiteQuality
SIO_000300: 4.141e1

GenotypeQuality
all individuals: 1061
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10967
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 2
allele frequency: 2.259887005649717e-4
allele num: 8850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.065757220505169e-4
allele num: 37532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.808988764044944e-4
allele num: 3560
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.649892756970797e-4
allele num: 12122
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 7.280669821623589e-4
allele num: 5494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.966e0

VQSLOD
type: SiteQuality
SIO_000300: 1.924e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.364e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

FS
type: SiteQuality
SIO_000300: 3.912e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 3.984e1

DP
type: SiteQuality
SIO_000300: 9.89459e5

QD
type: SiteQuality
SIO_000300: 2.56e1

GenotypeQuality
all individuals: 936
bin: 7.25e1
variant carriers: 911

GenotypeQuality
all individuals: 2530
bin: 5.25e1
variant carriers: 2472

GenotypeQuality
all individuals: 10967
bin: 9.75e1
variant carriers: 10936

East Asian
type: Population
allele count: 4812
allele frequency: 9.257406694882647e-1
allele num: 5198
num of homozygotes: 2260

European (Finnish)
type: Population
allele count: 2730
allele frequency: 7.668539325842697e-1
allele num: 3560
num of homozygotes: 1065

European (Non-Finnish)
type: Population
allele count: 29014
allele frequency: 7.730469998934243e-1
allele num: 37532
num of homozygotes: 11594

Latino
type: Population
allele count: 7747
allele frequency: 8.753672316384181e-1
allele num: 8850
num of homozygotes: 3387

African
type: Population
allele count: 4227
allele frequency: 7.693847834000728e-1
allele num: 5494
num of homozygotes: 1661

Other
type: Population
allele count: 474
allele frequency: 8.404255319148937e-1
allele num: 564
num of homozygotes: 201

South Asian
type: Population
allele count: 11024
allele frequency: 9.094208876423032e-1
allele num: 12122
num of homozygotes: 5083

MQRankSum
type: SiteQuality
SIO_000300: -1.966e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.924e1

MQ
type: SiteQuality
SIO_000300: 3.984e1

FS
type: SiteQuality
SIO_000300: 3.912e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

DP
type: SiteQuality
SIO_000300: 9.89459e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.364e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

QD
type: SiteQuality
SIO_000300: 2.56e1

GenotypeQuality
all individuals: 312
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1348
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.244165170556553e-4
allele num: 4456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3326
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.01039e5

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 3.998e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.635e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

GenotypeQuality
all individuals: 694
bin: 7.25e1
variant carriers: 48

GenotypeQuality
all individuals: 1976
bin: 6.75e1
variant carriers: 51

GenotypeQuality
all individuals: 534
bin: 8.25e1
variant carriers: 51

European (Non-Finnish)
type: Population
allele count: 290
allele frequency: 7.848019051742802e-3
allele num: 36952
num of homozygotes: 3

Other
type: Population
allele count: 1
allele frequency: 1.824817518248175e-3
allele num: 548
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 2.033271719038817e-3
allele num: 5410
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 3.106332138590203e-3
allele num: 8370
num of homozygotes: 0

East Asian
type: Population
allele count: 122
allele frequency: 2.737881508078994e-2
allele num: 4456
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 38
allele frequency: 1.142513529765484e-2
allele num: 3326
num of homozygotes: 0

South Asian
type: Population
allele count: 125
allele frequency: 1.092848400069942e-2
allele num: 11438
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 3.998e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 9.01039e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.635e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

GenotypeQuality
all individuals: 14635
bin: 2.25e1
variant carriers: 83

GenotypeQuality
all individuals: 1976
bin: 6.75e1
variant carriers: 30

GenotypeQuality
all individuals: 3147
bin: 1.75e1
variant carriers: 145

South Asian
type: Population
allele count: 256
allele frequency: 2.238153523343242e-2
allele num: 11438
num of homozygotes: 5

Latino
type: Population
allele count: 269
allele frequency: 3.213859020310633e-2
allele num: 8370
num of homozygotes: 9

Other
type: Population
allele count: 24
allele frequency: 4.379562043795621e-2
allele num: 548
num of homozygotes: 1

African
type: Population
allele count: 153
allele frequency: 2.828096118299445e-2
allele num: 5410
num of homozygotes: 6

East Asian
type: Population
allele count: 16
allele frequency: 3.590664272890485e-3
allele num: 4456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 164
allele frequency: 4.930847865303668e-2
allele num: 3326
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 1791
allele frequency: 4.846828317817709e-2
allele num: 36952
num of homozygotes: 51

DP
type: SiteQuality
SIO_000300: 9.01039e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.635e-1

MQ
type: SiteQuality
SIO_000300: 3.998e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.304e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
all individuals: 343
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3604
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.811990326753276e-5
allele num: 35562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.052e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.73e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.857e0

DP
type: SiteQuality
SIO_000300: 8.70902e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.145e1

MQ
type: SiteQuality
SIO_000300: 4.676e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.739e0

GenotypeQuality
all individuals: 649
bin: 7.75e1
variant carriers: 199

GenotypeQuality
all individuals: 3206
bin: 9.75e1
variant carriers: 1587

GenotypeQuality
all individuals: 427
bin: 8.25e1
variant carriers: 168

East Asian
type: Population
allele count: 190
allele frequency: 4.712301587301587e-2
allele num: 4032
num of homozygotes: 0

Latino
type: Population
allele count: 733
allele frequency: 1.055283616469911e-1
allele num: 6946
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2049
allele frequency: 6.280652280529671e-2
allele num: 32624
num of homozygotes: 3

South Asian
type: Population
allele count: 425
allele frequency: 4.069322098812715e-2
allele num: 10444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 74
allele frequency: 2.558782849239281e-2
allele num: 2892
num of homozygotes: 0

Other
type: Population
allele count: 28
allele frequency: 5.737704918032787e-2
allele num: 488
num of homozygotes: 0

African
type: Population
allele count: 472
allele frequency: 1.049822064056939e-1
allele num: 4496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.399999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.08e-1

DP
type: SiteQuality
SIO_000300: 8.7106e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.11e-1

MQ
type: SiteQuality
SIO_000300: 4.217e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.89e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.162e0

QD
type: SiteQuality
SIO_000300: 4.08e0

GenotypeQuality
all individuals: 353
bin: 8.25e1
variant carriers: 38

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 29

GenotypeQuality
all individuals: 532
bin: 7.25e1
variant carriers: 60

Latino
type: Population
allele count: 28
allele frequency: 3.625064733298809e-3
allele num: 7724
num of homozygotes: 0

South Asian
type: Population
allele count: 194
allele frequency: 1.731524455551589e-2
allele num: 11204
num of homozygotes: 6

East Asian
type: Population
allele count: 116
allele frequency: 3.023983315954119e-2
allele num: 3836
num of homozygotes: 2

Other
type: Population
allele count: 7
allele frequency: 1.4e-2
allele num: 500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 33
allele frequency: 1.120923913043478e-2
allele num: 2944
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 3.836833602584814e-3
allele num: 4952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 449
allele frequency: 1.343426485548441e-2
allele num: 33422
num of homozygotes: 2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.28e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

FS
type: SiteQuality
SIO_000300: 4.5721e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.131e1

QD
type: SiteQuality
SIO_000300: 6.87e0

MQ
type: SiteQuality
SIO_000300: 4.084e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.74e-1

DP
type: SiteQuality
SIO_000300: 8.34647e5

GenotypeQuality
all individuals: 3286
bin: 1.75e1
variant carriers: 94

GenotypeQuality
all individuals: 621
bin: 4.25e1
variant carriers: 46

GenotypeQuality
all individuals: 778
bin: 5.25e1
variant carriers: 55

South Asian
type: Population
allele count: 43
allele frequency: 3.883670520231214e-3
allele num: 11072
num of homozygotes: 4

Latino
type: Population
allele count: 493
allele frequency: 6.676598049837486e-2
allele num: 7384
num of homozygotes: 29

African
type: Population
allele count: 218
allele frequency: 4.644226672347678e-2
allele num: 4694
num of homozygotes: 13

European (Non-Finnish)
type: Population
allele count: 1797
allele frequency: 5.623357116034548e-2
allele num: 31956
num of homozygotes: 151

Other
type: Population
allele count: 21
allele frequency: 4.449152542372881e-2
allele num: 472
num of homozygotes: 2

East Asian
type: Population
allele count: 34
allele frequency: 9.615384615384616e-3
allele num: 3536
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 17
allele frequency: 6.123919308357349e-3
allele num: 2776
num of homozygotes: 1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.184e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.84e-1

DP
type: SiteQuality
SIO_000300: 7.86523e5

MQ
type: SiteQuality
SIO_000300: 4.679e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.119e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e-2

FS
type: SiteQuality
SIO_000300: 3.348e0

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

QD
type: SiteQuality
SIO_000300: 1.763e1

GenotypeQuality
all individuals: 5816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1875
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 186
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7206
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 7.71497e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.892e0

MQ
type: SiteQuality
SIO_000300: 4.528e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.038e0

QD
type: SiteQuality
SIO_000300: 6.69e0

GenotypeQuality
all individuals: 4040
bin: 3.25e1
variant carriers: 86

GenotypeQuality
all individuals: 338
bin: 8.25e1
variant carriers: 90

GenotypeQuality
all individuals: 321
bin: 5.25e1
variant carriers: 78

European (Non-Finnish)
type: Population
allele count: 1034
allele frequency: 3.376877857609405e-2
allele num: 30620
num of homozygotes: 24

European (Finnish)
type: Population
allele count: 92
allele frequency: 3.46646571213263e-2
allele num: 2654
num of homozygotes: 0

African
type: Population
allele count: 54
allele frequency: 1.198934280639432e-2
allele num: 4504
num of homozygotes: 0

East Asian
type: Population
allele count: 333
allele frequency: 1.020846106683017e-1
allele num: 3262
num of homozygotes: 19

South Asian
type: Population
allele count: 496
allele frequency: 4.542956585455211e-2
allele num: 10918
num of homozygotes: 24

Other
type: Population
allele count: 18
allele frequency: 3.846153846153846e-2
allele num: 468
num of homozygotes: 1

Latino
type: Population
allele count: 87
allele frequency: 1.231248230965185e-2
allele num: 7066
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: -4.52e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.85e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 5.301e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.02e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.87e-1

MQ
type: SiteQuality
SIO_000300: 4.193e1

QD
type: SiteQuality
SIO_000300: 1.355e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

DP
type: SiteQuality
SIO_000300: 7.60972e5

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 6.75e1
variant carriers: 1

Latino
type: Population
allele count: 3
allele frequency: 4.6875e-4
allele num: 6400
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 7.347538574577516e-4
allele num: 2722
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 8.501794823351596e-4
allele num: 10586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 6.565988181221273e-4
allele num: 27414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 408
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

MQ
type: SiteQuality
SIO_000300: 4.777e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.45e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.224e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.88e-2

QD
type: SiteQuality
SIO_000300: 1.387e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.055e0

DP
type: SiteQuality
SIO_000300: 7.09808e5

GenotypeQuality
all individuals: 252
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1932
bin: 9.75e1
variant carriers: 78

GenotypeQuality
all individuals: 325
bin: 7.25e1
variant carriers: 18

Latino
type: Population
allele count: 52
allele frequency: 9.651076466221232e-3
allele num: 5388
num of homozygotes: 0

African
type: Population
allele count: 50
allele frequency: 1.423690205011389e-2
allele num: 3512
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 2.896524170994806e-3
allele num: 10012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 210
allele frequency: 8.559550012227928e-3
allele num: 24534
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 1.648351648351648e-2
allele num: 364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 10
allele frequency: 4.492362982929021e-3
allele num: 2226
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 3.129890453834116e-3
allele num: 2556
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.13e0

FS
type: SiteQuality
SIO_000300: 6.079e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.71e-2

MQ
type: SiteQuality
SIO_000300: 4.643e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.197e0

MQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

QD
type: SiteQuality
SIO_000300: 2.16e0

DP
type: SiteQuality
SIO_000300: 7.08943e5

GenotypeQuality
all individuals: 158
bin: 8.75e1
variant carriers: 16

GenotypeQuality
all individuals: 272
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 181
bin: 9.25e1
variant carriers: 12

South Asian
type: Population
allele count: 8
allele frequency: 7.789678675754625e-4
allele num: 10270
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 5.310674455655868e-4
allele num: 3766
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.573426573426574e-3
allele num: 5720
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 3.676470588235294e-3
allele num: 2176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 46
allele frequency: 2.147525676937442e-2
allele num: 2142
num of homozygotes: 1

Other
type: Population
allele count: 2
allele frequency: 5.3475935828877e-3
allele num: 374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 107
allele frequency: 4.306181584030908e-3
allele num: 24848
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.41e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e-1

DP
type: SiteQuality
SIO_000300: 6.9427e5

VQSLOD
type: SiteQuality
SIO_000300: -1.714e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 8.039999999999999e0

FS
type: SiteQuality
SIO_000300: 7.927e0

MQ
type: SiteQuality
SIO_000300: 4.232e1

GenotypeQuality
all individuals: 143
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4889
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 4.361e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.13e-2

DP
type: SiteQuality
SIO_000300: 6.7722e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.904e0

QD
type: SiteQuality
SIO_000300: 2.612e1

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 422
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1891
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.707067258449983e-4
allele num: 5858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2210
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25294
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.667440061871617e-5
allele num: 10344
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.14e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.52e1

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.55e-1

QD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.191e0

DP
type: SiteQuality
SIO_000300: 6.75915e5

GenotypeQuality
all individuals: 2430
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 806
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.097e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 6.74812e5

FS
type: SiteQuality
SIO_000300: 5.133e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.179e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.12e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.563e0

MQ
type: SiteQuality
SIO_000300: 4.85e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 267
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4025
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 801
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.961023528479759e-5
allele num: 25246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2442
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

VQSLOD
type: SiteQuality
SIO_000300: -1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.74985e5

MQ
type: SiteQuality
SIO_000300: 4.712e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 321
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16777
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.34e-2

MQ
type: SiteQuality
SIO_000300: 4.712e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

DP
type: SiteQuality
SIO_000300: 6.74985e5

VQSLOD
type: SiteQuality
SIO_000300: -1.24e0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 13

GenotypeQuality
all individuals: 16245
bin: 2.25e1
variant carriers: 16

GenotypeQuality
all individuals: 721
bin: 6.75e1
variant carriers: 6

European (Finnish)
type: Population
allele count: 2
allele frequency: 9.319664492078285e-4
allele num: 2146
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 5.405405405405406e-3
allele num: 370
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.699395770392749e-3
allele num: 5296
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.240882103477523e-4
allele num: 2358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 48
allele frequency: 1.964958244637301e-3
allele num: 24428
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 4.234895539243365e-3
allele num: 3542
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 8.884501480750247e-4
allele num: 10130
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.74966e5

MQRankSum
type: SiteQuality
SIO_000300: -1.131e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

QD
type: SiteQuality
SIO_000300: 5.86e0

VQSLOD
type: SiteQuality
SIO_000300: -9.984e0

MQ
type: SiteQuality
SIO_000300: 4.88e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.38e-2

FS
type: SiteQuality
SIO_000300: 4.2164e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

GenotypeQuality
all individuals: 2728
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10960
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 430
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4774
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.02e1

FS
type: SiteQuality
SIO_000300: 1.227e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 7.19463e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

MQ
type: SiteQuality
SIO_000300: 4.611e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.469e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.179e-1

GenotypeQuality
all individuals: 331
bin: 8.75e1
variant carriers: 272

GenotypeQuality
all individuals: 421
bin: 7.75e1
variant carriers: 276

GenotypeQuality
all individuals: 2728
bin: 1.25e1
variant carriers: 1658

East Asian
type: Population
allele count: 911
allele frequency: 4.066964285714286e-1
allele num: 2240
num of homozygotes: 156

Other
type: Population
allele count: 95
allele frequency: 2.761627906976744e-1
allele num: 344
num of homozygotes: 13

Latino
type: Population
allele count: 899
allele frequency: 1.883116883116883e-1
allele num: 4774
num of homozygotes: 41

European (Finnish)
type: Population
allele count: 454
allele frequency: 2.486308871851041e-1
allele num: 1826
num of homozygotes: 33

African
type: Population
allele count: 791
allele frequency: 2.408647990255786e-1
allele num: 3284
num of homozygotes: 83

European (Non-Finnish)
type: Population
allele count: 5589
allele frequency: 2.567058607385633e-1
allele num: 21772
num of homozygotes: 541

South Asian
type: Population
allele count: 3603
allele frequency: 3.664564686737184e-1
allele num: 9832
num of homozygotes: 759

VQSLOD
type: SiteQuality
SIO_000300: 3.469e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.179e-1

FS
type: SiteQuality
SIO_000300: 1.227e0

MQRankSum
type: SiteQuality
SIO_000300: -7.89e-1

MQ
type: SiteQuality
SIO_000300: 4.611e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.37e-1

DP
type: SiteQuality
SIO_000300: 7.19463e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

QD
type: SiteQuality
SIO_000300: 2.02e1

GenotypeQuality
all individuals: 552
bin: 4.25e1
variant carriers: 293

GenotypeQuality
all individuals: 475
bin: 5.75e1
variant carriers: 362

GenotypeQuality
all individuals: 273
bin: 7.25e1
variant carriers: 149

East Asian
type: Population
allele count: 964
allele frequency: 4.194952132288947e-1
allele num: 2298
num of homozygotes: 174

European (Finnish)
type: Population
allele count: 470
allele frequency: 2.565502183406114e-1
allele num: 1832
num of homozygotes: 39

South Asian
type: Population
allele count: 3669
allele frequency: 3.689662107803701e-1
allele num: 9944
num of homozygotes: 781

European (Non-Finnish)
type: Population
allele count: 5754
allele frequency: 2.633168588687534e-1
allele num: 21852
num of homozygotes: 593

Latino
type: Population
allele count: 912
allele frequency: 1.926489226869455e-1
allele num: 4734
num of homozygotes: 45

African
type: Population
allele count: 809
allele frequency: 2.453001819284415e-1
allele num: 3298
num of homozygotes: 89

Other
type: Population
allele count: 97
allele frequency: 2.787356321839081e-1
allele num: 348
num of homozygotes: 14

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

DP
type: SiteQuality
SIO_000300: 7.21791e5

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.358e-1

QD
type: SiteQuality
SIO_000300: 1.998e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 5.74e-1

MQ
type: SiteQuality
SIO_000300: 4.63e1

VQSLOD
type: SiteQuality
SIO_000300: 1.937e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

GenotypeQuality
all individuals: 310
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2098
bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 229
bin: 8.25e1
variant carriers: 5

Latino
type: Population
allele count: 1
allele frequency: 1.867762420620097e-4
allele num: 5354
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.724795640326976e-4
allele num: 3670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 6.923515516820071e-4
allele num: 24554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 1.449275362318841e-3
allele num: 2070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2524
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.861503243037009e-4
allele num: 10484
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

DP
type: SiteQuality
SIO_000300: 6.88654e5

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.81e0

FS
type: SiteQuality
SIO_000300: 8.179e0

MQ
type: SiteQuality
SIO_000300: 4.41e1

GenotypeQuality
all individuals: 23120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3343
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3752
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.957888070925354e-5
allele num: 25266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

QD
type: SiteQuality
SIO_000300: 1.372e1

VQSLOD
type: SiteQuality
SIO_000300: 5.75e-1

FS
type: SiteQuality
SIO_000300: 2.158e0

DP
type: SiteQuality
SIO_000300: 7.00397e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

GenotypeQuality
all individuals: 2088
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 220
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10488
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.946282600233554e-4
allele num: 5138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2562
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.757859900717044e-4
allele num: 3626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.065166545689168e-5
allele num: 24798
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.8384e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

QD
type: SiteQuality
SIO_000300: 2.43e0

MQRankSum
type: SiteQuality
SIO_000300: -1.729e0

MQ
type: SiteQuality
SIO_000300: 4.66e1

VQSLOD
type: SiteQuality
SIO_000300: -5.742e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.57e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

DP
type: SiteQuality
SIO_000300: 7.06363e5

GenotypeQuality
all individuals: 2088
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 252
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5138
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2562
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.654715940430226e-3
allele num: 3626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2072
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.209774981853375e-4
allele num: 24798
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.8384e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.742e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.57e-2

MQ
type: SiteQuality
SIO_000300: 4.66e1

MQRankSum
type: SiteQuality
SIO_000300: -1.729e0

DP
type: SiteQuality
SIO_000300: 7.06363e5

QD
type: SiteQuality
SIO_000300: 2.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.56e-1

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2088
bin: 9.75e1
variant carriers: 5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 2.027081813021974e-4
allele num: 24666
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.979414093428345e-4
allele num: 5052
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 2.238388360380526e-3
allele num: 3574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.531e0

QD
type: SiteQuality
SIO_000300: 2.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.99e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQ
type: SiteQuality
SIO_000300: 4.693e1

VQSLOD
type: SiteQuality
SIO_000300: -2.322e1

FS
type: SiteQuality
SIO_000300: 6.8384e1

DP
type: SiteQuality
SIO_000300: 7.0942e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

GenotypeQuality
all individuals: 313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2696
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.446438692612885e-5
allele num: 10586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.792e1

DP
type: SiteQuality
SIO_000300: 7.1138e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.239e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.68e-2

FS
type: SiteQuality
SIO_000300: 6.794e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.739e0

QD
type: SiteQuality
SIO_000300: 5.16e0

GenotypeQuality
all individuals: 2088
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 307
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13510
bin: 7.5e0
variant carriers: 5

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 2.039484418339044e-4
allele num: 24516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2028
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.964085297418631e-3
allele num: 3564
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.703085581214826e-5
allele num: 10306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.998401278976818e-4
allele num: 5004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: -2.398e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

MQ
type: SiteQuality
SIO_000300: 4.722e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.04e-2

DP
type: SiteQuality
SIO_000300: 7.11479e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

FS
type: SiteQuality
SIO_000300: 6.981999999999999e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.701e0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 7.501875468867217e-4
allele num: 2666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3782
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25006
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2084
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.69e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.106e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 7.14527e5

QD
type: SiteQuality
SIO_000300: 7.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQ
type: SiteQuality
SIO_000300: 5.143e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 17

GenotypeQuality
all individuals: 2698
bin: 9.75e1
variant carriers: 710

GenotypeQuality
all individuals: 2420
bin: 6.25e1
variant carriers: 36

Other
type: Population
allele count: 3
allele frequency: 8.571428571428572e-3
allele num: 350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 321
allele frequency: 1.365260292616536e-2
allele num: 23512
num of homozygotes: 5

African
type: Population
allele count: 71
allele frequency: 2.100591715976331e-2
allele num: 3380
num of homozygotes: 0

Latino
type: Population
allele count: 19
allele frequency: 4.035683942225999e-3
allele num: 4708
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 3.294892915980231e-3
allele num: 2428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 8
allele frequency: 4.098360655737705e-3
allele num: 1952
num of homozygotes: 0

South Asian
type: Population
allele count: 328
allele frequency: 3.355842029875179e-2
allele num: 9774
num of homozygotes: 9

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.85e-1

FS
type: SiteQuality
SIO_000300: 1.5488e1

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

DP
type: SiteQuality
SIO_000300: 7.26267e5

VQSLOD
type: SiteQuality
SIO_000300: -2.361e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQ
type: SiteQuality
SIO_000300: 4.498e1

GenotypeQuality
all individuals: 481
bin: 5.25e1
variant carriers: 111

GenotypeQuality
all individuals: 445
bin: 7.75e1
variant carriers: 168

GenotypeQuality
all individuals: 2501
bin: 6.25e1
variant carriers: 122

East Asian
type: Population
allele count: 39
allele frequency: 1.563753007217322e-2
allele num: 2494
num of homozygotes: 0

African
type: Population
allele count: 73
allele frequency: 2.077404667046101e-2
allele num: 3514
num of homozygotes: 1

South Asian
type: Population
allele count: 385
allele frequency: 3.901499797324686e-2
allele num: 9868
num of homozygotes: 16

European (Finnish)
type: Population
allele count: 57
allele frequency: 2.908163265306122e-2
allele num: 1960
num of homozygotes: 0

Latino
type: Population
allele count: 110
allele frequency: 2.207062600321027e-2
allele num: 4984
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 1210
allele frequency: 5.006206040546132e-2
allele num: 24170
num of homozygotes: 18

Other
type: Population
allele count: 15
allele frequency: 4.143646408839779e-2
allele num: 362
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.17e-2

QD
type: SiteQuality
SIO_000300: 9.83e0

FS
type: SiteQuality
SIO_000300: 5.717e0

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

MQ
type: SiteQuality
SIO_000300: 4.48e1

DP
type: SiteQuality
SIO_000300: 7.36465e5

GenotypeQuality
all individuals: 154
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24856
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.712e1

VQSLOD
type: SiteQuality
SIO_000300: -8.687e1

QD
type: SiteQuality
SIO_000300: 1.89e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

FS
type: SiteQuality
SIO_000300: 1.36242e2

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.575e0

DP
type: SiteQuality
SIO_000300: 7.38277e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.64e-1

GenotypeQuality
all individuals: 3696
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1912
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 629
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1974
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 1.7472335468841e-3
allele num: 3434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2470
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.07641196013289e-4
allele num: 4816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 2.011586739620212e-4
allele num: 24856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.712e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.86e-2

FS
type: SiteQuality
SIO_000300: 1.36242e2

DP
type: SiteQuality
SIO_000300: 7.38277e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.575e0

VQSLOD
type: SiteQuality
SIO_000300: -8.687e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3711
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 3.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.71e-1

MQ
type: SiteQuality
SIO_000300: 4.759e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.64e-1

QD
type: SiteQuality
SIO_000300: 1.807e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

DP
type: SiteQuality
SIO_000300: 7.50377e5

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.230118443316413e-4
allele num: 2364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.28e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 6.51e0

VQSLOD
type: SiteQuality
SIO_000300: 3.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 5.133e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.52548e5

GenotypeQuality
all individuals: 620
bin: 7.75e1
variant carriers: 527

GenotypeQuality
all individuals: 2545
bin: 1.25e1
variant carriers: 2118

GenotypeQuality
all individuals: 670
bin: 5.75e1
variant carriers: 602

South Asian
type: Population
allele count: 8044
allele frequency: 7.449527690313021e-1
allele num: 10798
num of homozygotes: 3235

European (Non-Finnish)
type: Population
allele count: 15491
allele frequency: 5.308773132282385e-1
allele num: 29180
num of homozygotes: 4148

Latino
type: Population
allele count: 3403
allele frequency: 5.671666666666667e-1
allele num: 6000
num of homozygotes: 894

East Asian
type: Population
allele count: 3452
allele frequency: 8.156899810964083e-1
allele num: 4232
num of homozygotes: 1402

Other
type: Population
allele count: 309
allele frequency: 6.717391304347826e-1
allele num: 460
num of homozygotes: 111

African
type: Population
allele count: 3023
allele frequency: 6.632294866169373e-1
allele num: 4558
num of homozygotes: 1009

European (Finnish)
type: Population
allele count: 1576
allele frequency: 6.066204772902233e-1
allele num: 2598
num of homozygotes: 439

MQ
type: SiteQuality
SIO_000300: 4.732e1

FS
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.451e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.122e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: -1.537e0

QD
type: SiteQuality
SIO_000300: 2.962e1

DP
type: SiteQuality
SIO_000300: 8.9824e5

GenotypeQuality
all individuals: 1648
bin: 4.75e1
variant carriers: 22

GenotypeQuality
all individuals: 14756
bin: 9.75e1
variant carriers: 703

GenotypeQuality
all individuals: 2476
bin: 2.75e1
variant carriers: 15

Latino
type: Population
allele count: 13
allele frequency: 2.166666666666667e-3
allele num: 6000
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.539645881447267e-3
allele num: 2598
num of homozygotes: 0

African
type: Population
allele count: 59
allele frequency: 1.294427380430013e-2
allele num: 4558
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.417769376181475e-3
allele num: 4232
num of homozygotes: 0

South Asian
type: Population
allele count: 294
allele frequency: 2.722726430820522e-2
allele num: 10798
num of homozygotes: 6

European (Non-Finnish)
type: Population
allele count: 259
allele frequency: 8.875942426319398e-3
allele num: 29180
num of homozygotes: 3

Other
type: Population
allele count: 2
allele frequency: 4.347826086956522e-3
allele num: 460
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.122e-1

MQ
type: SiteQuality
SIO_000300: 4.732e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.537e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 8.9824e5

QD
type: SiteQuality
SIO_000300: 2.962e1

VQSLOD
type: SiteQuality
SIO_000300: 3.451e1

GenotypeQuality
all individuals: 553
bin: 9.25e1
variant carriers: 515

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 497

GenotypeQuality
all individuals: 428
bin: 7.25e1
variant carriers: 349

Other
type: Population
allele count: 311
allele frequency: 6.790393013100436e-1
allele num: 458
num of homozygotes: 113

European (Non-Finnish)
type: Population
allele count: 15583
allele frequency: 5.34653125643313e-1
allele num: 29146
num of homozygotes: 4212

European (Finnish)
type: Population
allele count: 1582
allele frequency: 6.052027543993879e-1
allele num: 2614
num of homozygotes: 443

South Asian
type: Population
allele count: 8298
allele frequency: 7.696160267111853e-1
allele num: 10782
num of homozygotes: 3465

African
type: Population
allele count: 3063
allele frequency: 6.720052654673102e-1
allele num: 4558
num of homozygotes: 1037

East Asian
type: Population
allele count: 3457
allele frequency: 8.153301886792453e-1
allele num: 4240
num of homozygotes: 1405

Latino
type: Population
allele count: 3373
allele frequency: 5.640468227424749e-1
allele num: 5980
num of homozygotes: 881

MQ
type: SiteQuality
SIO_000300: 4.72e1

FS
type: SiteQuality
SIO_000300: 1.237e0

QD
type: SiteQuality
SIO_000300: 2.975e1

DP
type: SiteQuality
SIO_000300: 8.96086e5

MQRankSum
type: SiteQuality
SIO_000300: -1.564e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.976e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

GenotypeQuality
all individuals: 14350
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2151
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4240
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.564e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.976e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

MQ
type: SiteQuality
SIO_000300: 4.72e1

QD
type: SiteQuality
SIO_000300: 2.975e1

FS
type: SiteQuality
SIO_000300: 1.237e0

DP
type: SiteQuality
SIO_000300: 8.96086e5

GenotypeQuality
all individuals: 212
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3338
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -2.422e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.01e-2

MQ
type: SiteQuality
SIO_000300: 5.395e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.883e0

FS
type: SiteQuality
SIO_000300: 3.104e0

VQSLOD
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 8.6271e5

GenotypeQuality
all individuals: 3104
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2300
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.535227187099691e-5
allele num: 26542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1976
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3096
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.59171e5

QD
type: SiteQuality
SIO_000300: 2.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.107e0

MQRankSum
type: SiteQuality
SIO_000300: -1.788e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.13e-2

MQ
type: SiteQuality
SIO_000300: 4.61e1

FS
type: SiteQuality
SIO_000300: 1.9536e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

GenotypeQuality
all individuals: 144
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.75629178874615e-5
allele num: 26622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3134
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.28e-2

DP
type: SiteQuality
SIO_000300: 8.60826e5

QD
type: SiteQuality
SIO_000300: 6.27e0

FS
type: SiteQuality
SIO_000300: 3.979e0

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 4.411e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.805e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

GenotypeQuality
all individuals: 522
bin: 7.75e1
variant carriers: 325

GenotypeQuality
all individuals: 3220
bin: 6.25e1
variant carriers: 384

GenotypeQuality
all individuals: 360
bin: 9.25e1
variant carriers: 277

European (Finnish)
type: Population
allele count: 624
allele frequency: 2.639593908629442e-1
allele num: 2364
num of homozygotes: 74

Other
type: Population
allele count: 108
allele frequency: 2.8125e-1
allele num: 384
num of homozygotes: 18

European (Non-Finnish)
type: Population
allele count: 7035
allele frequency: 2.400696150696151e-1
allele num: 29304
num of homozygotes: 1058

African
type: Population
allele count: 1136
allele frequency: 2.884713052310818e-1
allele num: 3938
num of homozygotes: 172

Latino
type: Population
allele count: 962
allele frequency: 1.815094339622642e-1
allele num: 5300
num of homozygotes: 89

East Asian
type: Population
allele count: 1728
allele frequency: 3.987078910936779e-1
allele num: 4334
num of homozygotes: 356

South Asian
type: Population
allele count: 1891
allele frequency: 2.522678762006403e-1
allele num: 7496
num of homozygotes: 348

MQ
type: SiteQuality
SIO_000300: 4.745e1

DP
type: SiteQuality
SIO_000300: 9.12374e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.685e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

FS
type: SiteQuality
SIO_000300: 3.443e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

QD
type: SiteQuality
SIO_000300: 1.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.208e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

GenotypeQuality
all individuals: 2415
bin: 2.75e1
variant carriers: 1311

GenotypeQuality
all individuals: 472
bin: 9.25e1
variant carriers: 347

GenotypeQuality
all individuals: 3824
bin: 6.25e1
variant carriers: 572

Latino
type: Population
allele count: 2244
allele frequency: 3.914863921842289e-1
allele num: 5732
num of homozygotes: 433

European (Non-Finnish)
type: Population
allele count: 9233
allele frequency: 3.028404618210443e-1
allele num: 30488
num of homozygotes: 1597

European (Finnish)
type: Population
allele count: 1045
allele frequency: 4.127172195892575e-1
allele num: 2532
num of homozygotes: 203

South Asian
type: Population
allele count: 5172
allele frequency: 5.148317738403345e-1
allele num: 10046
num of homozygotes: 1656

African
type: Population
allele count: 1941
allele frequency: 4.350067234424025e-1
allele num: 4462
num of homozygotes: 463

Other
type: Population
allele count: 174
allele frequency: 4.084507042253521e-1
allele num: 426
num of homozygotes: 41

East Asian
type: Population
allele count: 1834
allele frequency: 3.967979229770662e-1
allele num: 4622
num of homozygotes: 366

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.61e1

FS
type: SiteQuality
SIO_000300: 7.151e0

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.449e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 4.61e1

DP
type: SiteQuality
SIO_000300: 9.22699e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

GenotypeQuality
all individuals: 797
bin: 7.75e1
variant carriers: 55

GenotypeQuality
all individuals: 1264
bin: 6.75e1
variant carriers: 43

GenotypeQuality
all individuals: 1105
bin: 4.25e1
variant carriers: 24

East Asian
type: Population
allele count: 149
allele frequency: 3.223712678494158e-2
allele num: 4622
num of homozygotes: 3

Latino
type: Population
allele count: 31
allele frequency: 5.408234473133287e-3
allele num: 5732
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 7.042253521126761e-3
allele num: 426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 53
allele frequency: 2.093206951026856e-2
allele num: 2532
num of homozygotes: 1

African
type: Population
allele count: 22
allele frequency: 4.930524428507396e-3
allele num: 4462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 383
allele frequency: 1.256231960115455e-2
allele num: 30488
num of homozygotes: 9

South Asian
type: Population
allele count: 212
allele frequency: 2.110292653792554e-2
allele num: 10046
num of homozygotes: 16

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.61e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.58e-1

DP
type: SiteQuality
SIO_000300: 9.22699e5

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

FS
type: SiteQuality
SIO_000300: 7.151e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.449e-1

MQ
type: SiteQuality
SIO_000300: 4.61e1

VQSLOD
type: SiteQuality
SIO_000300: 8.31e-1

GenotypeQuality
all individuals: 103
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3473
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1466
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.950495049504951e-4
allele num: 2020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.823144104803493e-5
allele num: 14656
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.96e-1

DP
type: SiteQuality
SIO_000300: 9.47101e5

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.52e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 5.72e0

FS
type: SiteQuality
SIO_000300: 2.254e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 4.925e1

GenotypeQuality
all individuals: 566
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.364628820960699e-4
allele num: 14656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1482
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.96e-1

FS
type: SiteQuality
SIO_000300: 2.254e0

DP
type: SiteQuality
SIO_000300: 9.47101e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.52e-2

QD
type: SiteQuality
SIO_000300: 5.72e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

GenotypeQuality
all individuals: 1537
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4558
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2956
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 8.99481e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.71e1

MQ
type: SiteQuality
SIO_000300: 4.401e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2956
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6728
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.71e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

MQ
type: SiteQuality
SIO_000300: 4.401e1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

DP
type: SiteQuality
SIO_000300: 8.99481e5

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4527
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6744
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.475e1

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.66e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.647e1

DP
type: SiteQuality
SIO_000300: 9.0124e5

GenotypeQuality
all individuals: 6210
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 558
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.727e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 9.695e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.65e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.25e1

MQRankSum
type: SiteQuality
SIO_000300: 7.76e-1

DP
type: SiteQuality
SIO_000300: 9.03447e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

GenotypeQuality
all individuals: 1322
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1203
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.853881278538813e-5
allele num: 35040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10014
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.02134e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.009e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.461e1

QD
type: SiteQuality
SIO_000300: 7.2e0

MQRankSum
type: SiteQuality
SIO_000300: -1.398e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
all individuals: 2179
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3341
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2372
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.950838860710105e-4
allele num: 5126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6716
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.549081626990733e-5
allele num: 36042
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.62e0

FS
type: SiteQuality
SIO_000300: 4.14e0

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 1.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 9.13238e5

MQ
type: SiteQuality
SIO_000300: 5.516e1

GenotypeQuality
all individuals: 2977
bin: 2.75e1
variant carriers: 129

GenotypeQuality
all individuals: 681
bin: 7.25e1
variant carriers: 121

GenotypeQuality
all individuals: 674
bin: 5.25e1
variant carriers: 114

Latino
type: Population
allele count: 122
allele frequency: 1.919446192573946e-2
allele num: 6356
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 756
allele frequency: 2.2013860578883e-2
allele num: 34342
num of homozygotes: 6

South Asian
type: Population
allele count: 367
allele frequency: 3.709318779058015e-2
allele num: 9894
num of homozygotes: 12

European (Finnish)
type: Population
allele count: 116
allele frequency: 4.113475177304964e-2
allele num: 2820
num of homozygotes: 1

East Asian
type: Population
allele count: 50
allele frequency: 1.004419445560466e-2
allele num: 4978
num of homozygotes: 0

African
type: Population
allele count: 69
allele frequency: 1.456310679611651e-2
allele num: 4738
num of homozygotes: 0

Other
type: Population
allele count: 15
allele frequency: 3.36322869955157e-2
allele num: 446
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.27969e5

VQSLOD
type: SiteQuality
SIO_000300: 3.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 9.56e-1

QD
type: SiteQuality
SIO_000300: 9.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

MQ
type: SiteQuality
SIO_000300: 3.912e1

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeQuality
all individuals: 1996
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 7.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6724
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.470758794244762e-5
allele num: 36558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2966
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 6.12e0

MQ
type: SiteQuality
SIO_000300: 4.778e1

DP
type: SiteQuality
SIO_000300: 9.3381e5

VQSLOD
type: SiteQuality
SIO_000300: -1.735e0

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2982
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.031991744066047e-4
allele num: 9690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6702
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.586e1

QD
type: SiteQuality
SIO_000300: 3.171e1

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 9.3746e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

GenotypeQuality
all individuals: 946
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2982
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.3746e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.81e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.586e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 3.171e1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 2043
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2386
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 515
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6684
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2962
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.537e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

QD
type: SiteQuality
SIO_000300: 5.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.512e0

MQRankSum
type: SiteQuality
SIO_000300: -1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

DP
type: SiteQuality
SIO_000300: 9.41439e5

GenotypeQuality
all individuals: 714
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2912
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6674
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.04582651391162e-4
allele num: 4888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2958
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQ
type: SiteQuality
SIO_000300: 4.251e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.006e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.191e0

DP
type: SiteQuality
SIO_000300: 9.43618e5

QD
type: SiteQuality
SIO_000300: 1.281e1

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4982
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2998
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.77e1

VQSLOD
type: SiteQuality
SIO_000300: -1.895e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 9.46448e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1