7-94540652-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540652
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540652
    reference: chr 7
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1227G>A
  hgvsp: ENST00000424654.1:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1227G>A
  hgvsp: ENST00000289495.5:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1227G>A
  hgvsp: ENST00000433881.1:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1227G>A
  hgvsp: ENST00000340694.4:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1227G>A
  hgvsp: ENST00000456331.2:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1227G>A
  hgvsp: ENST00000433360.1:c.1227G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18898
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1564
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg409Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

7-94540663-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540663
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540663
    reference: chr 7
allele count: 1
allele frequency: 8.259002312520648e-6
allele num: 121080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1238A>G
  hgvsp: ENSP00000411342.1:p.Asp413Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1238A>G
  hgvsp: ENSP00000289495.5:p.Asp413Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1238A>G
  hgvsp: ENSP00000405514.1:p.Asp413Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1238A>G
  hgvsp: ENSP00000402893.2:p.Asp413Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1238A>G
  hgvsp: ENSP00000344524.4:p.Asp413Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1238A>G
  hgvsp: ENSP00000398870.1:p.Asp413Gly
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45894
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp413Gly
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

7-94540671-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540671
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540671
    reference: chr 7
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1246G>A
  hgvsp: ENSP00000289495.5:p.Glu416Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1246G>A
  hgvsp: ENSP00000405514.1:p.Glu416Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1246G>A
  hgvsp: ENSP00000411342.1:p.Glu416Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1246G>A
  hgvsp: ENSP00000398870.1:p.Glu416Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1246G>A
  hgvsp: ENSP00000344524.4:p.Glu416Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1246G>A
  hgvsp: ENSP00000402893.2:p.Glu416Lys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29049
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu416Lys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

7-94540677-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540677
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540677
    reference: chr 7
allele count: 1
allele frequency: 8.255865792645674e-6
allele num: 121126
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1252G>C
  hgvsp: ENSP00000402893.2:p.Gly418Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1252G>C
  hgvsp: ENSP00000344524.4:p.Gly418Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1252G>C
  hgvsp: ENSP00000405514.1:p.Gly418Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1252G>C
  hgvsp: ENSP00000289495.5:p.Gly418Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1252G>C
  hgvsp: ENSP00000398870.1:p.Gly418Arg
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1252G>C
  hgvsp: ENSP00000411342.1:p.Gly418Arg
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly418Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

7-94540680-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540680
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540680
    reference: chr 7
allele count: 1
allele frequency: 8.257501940512956e-6
allele num: 121102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1255A>G
  hgvsp: ENSP00000411342.1:p.Thr419Ala
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1255A>G
  hgvsp: ENSP00000289495.5:p.Thr419Ala
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1255A>G
  hgvsp: ENSP00000405514.1:p.Thr419Ala
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1255A>G
  hgvsp: ENSP00000344524.4:p.Thr419Ala
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1255A>G
  hgvsp: ENSP00000402893.2:p.Thr419Ala
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1255A>G
  hgvsp: ENSP00000398870.1:p.Thr419Ala
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29066
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr419Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

7-94540689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540689
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540689
    reference: chr 7
allele count: 1
allele frequency: 8.258456659619451e-6
allele num: 121088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1264G>A
  hgvsp: ENSP00000402893.2:p.Asp422Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1264G>A
  hgvsp: ENSP00000398870.1:p.Asp422Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1264G>A
  hgvsp: ENSP00000289495.5:p.Asp422Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1264G>A
  hgvsp: ENSP00000411342.1:p.Asp422Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1264G>A
  hgvsp: ENSP00000405514.1:p.Asp422Asn
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1264G>A
  hgvsp: ENSP00000344524.4:p.Asp422Asn
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19352
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46303
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp422Asn
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-94540698-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540698
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540698
    reference: chr 7
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1273G>A
  hgvsp: ENSP00000398870.1:p.Glu425Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1273G>A
  hgvsp: ENSP00000405514.1:p.Glu425Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1273G>A
  hgvsp: ENSP00000402893.2:p.Glu425Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1273G>A
  hgvsp: ENSP00000344524.4:p.Glu425Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1273G>A
  hgvsp: ENSP00000411342.1:p.Glu425Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1273G>A
  hgvsp: ENSP00000289495.5:p.Glu425Lys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29106
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19588
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46658
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6451
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu425Lys
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-94540700-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540700
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540700
    reference: chr 7
allele count: 1
allele frequency: 8.257911078813503e-6
allele num: 121096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1275A>C
  hgvsp: ENSP00000344524.4:p.Glu425Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1275A>C
  hgvsp: ENSP00000398870.1:p.Glu425Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1275A>C
  hgvsp: ENSP00000289495.5:p.Glu425Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1275A>C
  hgvsp: ENSP00000405514.1:p.Glu425Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1275A>C
  hgvsp: ENSP00000402893.2:p.Glu425Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1275A>C
  hgvsp: ENSP00000411342.1:p.Glu425Asp
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47023
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu425Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

7-94540705-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540705
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540705
    reference: chr 7
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1280G>T
  hgvsp: ENSP00000411342.1:p.Ser427Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1280G>T
  hgvsp: ENSP00000398870.1:p.Ser427Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1280G>T
  hgvsp: ENSP00000405514.1:p.Ser427Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1280G>T
  hgvsp: ENSP00000402893.2:p.Ser427Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1280G>T
  hgvsp: ENSP00000344524.4:p.Ser427Ile
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1280G>T
  hgvsp: ENSP00000289495.5:p.Ser427Ile
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19765
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser427Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

7-94540709-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540709
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540709
    reference: chr 7
allele count: 51
allele frequency: 4.212299915754001e-4
allele num: 121074
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1284T>G
  hgvsp: ENSP00000405514.1:p.Asp428Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1284T>G
  hgvsp: ENSP00000344524.4:p.Asp428Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1284T>G
  hgvsp: ENSP00000402893.2:p.Asp428Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1284T>G
  hgvsp: ENSP00000411342.1:p.Asp428Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1284T>G
  hgvsp: ENSP00000398870.1:p.Asp428Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1284T>G
  hgvsp: ENSP00000289495.5:p.Asp428Glu
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 19815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29222
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7708
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp428Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

7-94540711-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540711
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540711
    reference: chr 7
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1286A>G
  hgvsp: ENSP00000289495.5:p.Glu429Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1286A>G
  hgvsp: ENSP00000402893.2:p.Glu429Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1286A>G
  hgvsp: ENSP00000344524.4:p.Glu429Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1286A>G
  hgvsp: ENSP00000411342.1:p.Glu429Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1286A>G
  hgvsp: ENSP00000405514.1:p.Glu429Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1286A>G
  hgvsp: ENSP00000398870.1:p.Glu429Gly
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29285
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu429Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

7-94540714-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540714
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540714
    reference: chr 7
allele count: 16
allele frequency: 1.321353065539112e-4
allele num: 121088
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1289A>G
  hgvsp: ENSP00000289495.5:p.Asn430Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1289A>G
  hgvsp: ENSP00000402893.2:p.Asn430Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1289A>G
  hgvsp: ENSP00000398870.1:p.Asn430Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1289A>G
  hgvsp: ENSP00000405514.1:p.Asn430Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1289A>G
  hgvsp: ENSP00000411342.1:p.Asn430Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1289A>G
  hgvsp: ENSP00000344524.4:p.Asn430Ser
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29322
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7692
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19928
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn430Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

7-94540723-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540723
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540723
    reference: chr 7
allele count: 9
allele frequency: 7.433470439565885e-5
allele num: 121074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1298A>G
  hgvsp: ENSP00000411342.1:p.Tyr433Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1298A>G
  hgvsp: ENSP00000289495.5:p.Tyr433Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1298A>G
  hgvsp: ENSP00000344524.4:p.Tyr433Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1298A>G
  hgvsp: ENSP00000405514.1:p.Tyr433Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1298A>G
  hgvsp: ENSP00000398870.1:p.Tyr433Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1298A>G
  hgvsp: ENSP00000402893.2:p.Tyr433Cys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7653
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20045
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr433Cys
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

7-94540729-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540729
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540729
    reference: chr 7
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1304C>T
  hgvsp: ENSP00000289495.5:p.Pro435Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1304C>T
  hgvsp: ENSP00000402893.2:p.Pro435Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1304C>T
  hgvsp: ENSP00000344524.4:p.Pro435Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1304C>T
  hgvsp: ENSP00000411342.1:p.Pro435Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1304C>T
  hgvsp: ENSP00000398870.1:p.Pro435Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1304C>T
  hgvsp: ENSP00000405514.1:p.Pro435Leu
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48336
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro435Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

7-94540735-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540735
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540735
    reference: chr 7
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1310T>C
  hgvsp: ENSP00000411342.1:p.Met437Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1310T>C
  hgvsp: ENSP00000344524.4:p.Met437Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1310T>C
  hgvsp: ENSP00000402893.2:p.Met437Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1310T>C
  hgvsp: ENSP00000398870.1:p.Met437Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1310T>C
  hgvsp: ENSP00000289495.5:p.Met437Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1310T>C
  hgvsp: ENSP00000405514.1:p.Met437Thr
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met437Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

7-94540742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540742
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540742
    reference: chr 7
allele count: 1
allele frequency: 8.264326209484141e-6
allele num: 121002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1317C>T
  hgvsp: ENST00000424654.1:c.1317C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1317C>T
  hgvsp: ENST00000433360.1:c.1317C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1317C>T
  hgvsp: ENST00000456331.2:c.1317C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1317C>T
  hgvsp: ENST00000289495.5:c.1317C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1317C>T
  hgvsp: ENST00000433881.1:c.1317C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1317C>T
  hgvsp: ENST00000340694.4:c.1317C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr439Tyr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

7-94540744-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540744
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540744
    reference: chr 7
allele count: 3
allele frequency: 2.479379824459908e-5
allele num: 120998
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1319C>T
  hgvsp: ENSP00000398870.1:p.Ser440Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1319C>T
  hgvsp: ENSP00000411342.1:p.Ser440Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1319C>T
  hgvsp: ENSP00000289495.5:p.Ser440Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1319C>T
  hgvsp: ENSP00000402893.2:p.Ser440Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1319C>T
  hgvsp: ENSP00000405514.1:p.Ser440Leu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1319C>T
  hgvsp: ENSP00000344524.4:p.Ser440Leu
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser440Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

7-94540745-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540745
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540745
    reference: chr 7
allele count: 1
allele frequency: 8.266102367411717e-6
allele num: 120976
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1320G>A
  hgvsp: ENST00000424654.1:c.1320G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1320G>A
  hgvsp: ENST00000340694.4:c.1320G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1320G>A
  hgvsp: ENST00000433881.1:c.1320G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1320G>A
  hgvsp: ENST00000433360.1:c.1320G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1320G>A
  hgvsp: ENST00000456331.2:c.1320G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1320G>A
  hgvsp: ENST00000289495.5:c.1320G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48512
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser440Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ

7-94540750-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540750
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540750
    reference: chr 7
allele count: 15
allele frequency: 1.240181893344357e-4
allele num: 120950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1325T>C
  hgvsp: ENSP00000411342.1:p.Ile442Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1325T>C
  hgvsp: ENSP00000344524.4:p.Ile442Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1325T>C
  hgvsp: ENSP00000398870.1:p.Ile442Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1325T>C
  hgvsp: ENSP00000405514.1:p.Ile442Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1325T>C
  hgvsp: ENSP00000402893.2:p.Ile442Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1325T>C
  hgvsp: ENSP00000289495.5:p.Ile442Thr
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29703
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7583
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile442Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-94540770-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540770
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540770
    reference: chr 7
allele count: 14
allele frequency: 1.16051593222587e-4
allele num: 120636
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1345G>A
  hgvsp: ENSP00000289495.5:p.Glu449Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1345G>A
  hgvsp: ENSP00000398870.1:p.Glu449Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1345G>A
  hgvsp: ENSP00000405514.1:p.Glu449Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1345G>A
  hgvsp: ENSP00000402893.2:p.Glu449Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1345G>A
  hgvsp: ENSP00000411342.1:p.Glu449Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1345G>A
  hgvsp: ENSP00000344524.4:p.Glu449Lys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20085
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48846
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu449Lys
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

7-94540787-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540787
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540787
    reference: chr 7
allele count: 21
allele frequency: 1.7542101042502e-4
allele num: 119712
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1362T>C
  hgvsp: ENST00000456331.2:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1362T>C
  hgvsp: ENST00000340694.4:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1362T>C
  hgvsp: ENST00000424654.1:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1362T>C
  hgvsp: ENST00000433881.1:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1362T>C
  hgvsp: ENST00000433360.1:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1362T>C
  hgvsp: ENST00000289495.5:c.1362T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29541
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn454Asn
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/7-94540810-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540810
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540810
    reference: chr 7
allele count: 4
allele frequency: 3.446255643243615e-5
allele num: 116068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1385C>A
  hgvsp: ENSP00000411342.1:p.Ala462Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1385C>A
  hgvsp: ENSP00000344524.4:p.Ala462Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1385C>A
  hgvsp: ENSP00000289495.5:p.Ala462Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1385C>A
  hgvsp: ENSP00000405514.1:p.Ala462Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1385C>A
  hgvsp: ENSP00000402893.2:p.Ala462Asp
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1385C>A
  hgvsp: ENSP00000398870.1:p.Ala462Asp
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27542
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17494
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala462Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

7-94540838-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540838
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540838
    reference: chr 7
allele count: 1
allele frequency: 9.477594965501554e-6
allele num: 105512
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1395+18A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1395+18A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1395+18A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1395+18A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1395+18A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1395+18A>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13783
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14655
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

7-94540840-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540840
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540840
    reference: chr 7
allele count: 1
allele frequency: 9.557853688375738e-6
allele num: 104626
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1395+20T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1395+20T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1395+20T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1395+20T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1395+20T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1395+20T>C
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9841
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4798
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3520
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

7-94540851-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540851
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540851
    reference: chr 7
allele count: 2
allele frequency: 1.996366612764768e-5
allele num: 100182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1395+31A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1395+31A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1395+31A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1395+31A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1395+31A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1395+31A>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20109
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6205
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6713
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1061
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 16591
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 387
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

7-94540864-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540864
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540864
    reference: chr 7
allele count: 1
allele frequency: 1.095866391969491e-5
allele num: 91252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1395+44T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1395+44T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1395+44T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1395+44T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1395+44T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1395+44T>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6398
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8465
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 467
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3800
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

7-94540871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94540871
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94540871
    reference: chr 7
allele count: 1
allele frequency: 1.131759433214876e-5
allele num: 88358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1395+51G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1395+51G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1395+51G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1395+51G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1395+51G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1395+51G>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17837
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3775
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2438
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6934
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8428
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4108
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

7-94740520-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740520
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740520
    reference: chr 7
allele count: 1
allele frequency: 8.755340757862296e-6
allele num: 114216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-51G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-51G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-51G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-51G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-51G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-51G>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2748
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3959
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10198
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

7-94740520-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740520
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740520
    reference: chr 7
allele count: 3
allele frequency: 2.626602227358689e-5
allele num: 114216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-51G>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-51G>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-51G>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-51G>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-51G>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-51G>C
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5612
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9742
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3959
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10198
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4671
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

7-94740521-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740521
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740521
    reference: chr 7
allele count: 1
allele frequency: 8.779939594015594e-6
allele num: 113896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-50C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-50C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-50C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-50C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-50C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-50C>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7499
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3801
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3440
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2726
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2513
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2073
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

7-94740522-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740522
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740523
    reference: chr 7
allele count: 31
allele frequency: 2.744382867968626e-4
allele num: 112958
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-47dupG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-47dupG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-47dupG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-47dupG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-47dupG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-47dupG
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9231
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2046
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3434
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 4414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2151
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2624
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7140
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-94740522-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740522
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740521
    reference: chr 7
allele count: 2
allele frequency: 1.770569592237823e-5
allele num: 112958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-47delG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-47delG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-47delG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-47delG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-47delG
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-47delG
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3822
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9231
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4959
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1781
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7140
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4255
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4414
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3275
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3434
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: AG
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

7-94740524-G-GGTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740524
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740527
    reference: chr 7
allele count: 9
allele frequency: 1.500600240096038e-4
allele num: 59976
alternate allele: GGTT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-47_1396-46insGTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-47_1396-46insGTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-47_1396-46insGTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-47_1396-46insGTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-47_1396-46insGTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-47_1396-46insGTT
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22522
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6531
  bin: 9.75e1
  variant carriers: 6
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

7-94740524-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740524
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740525
    reference: chr 7
allele count: 13644
allele frequency: 2.274909963985594e-1
allele num: 59976
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-34dupT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-34dupT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-34dupT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-34dupT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-34dupT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-34dupT
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 636
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 1.75e1
  variant carriers: 3895
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 4.75e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 4.25e1
  variant carriers: 417
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 1.25e1
  variant carriers: 2780
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 3.75e1
  variant carriers: 631
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.75e1
  variant carriers: 2117
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 2.25e1
  variant carriers: 3269
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.25e1
  variant carriers: 1128
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 5.25e1
  variant carriers: 801
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.25e1
  variant carriers: 493
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.25e1
  variant carriers: 504
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 4.25e1
  variant carriers: 781
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 1.25e1
  variant carriers: 393
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 7.25e1
  variant carriers: 702
genotype quality: GenotypeQuality
  all individuals: 22522
  bin: 2.5e0
  variant carriers: 310
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.25e1
  variant carriers: 673
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 7.75e1
  variant carriers: 547
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 678
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 3.75e1
  variant carriers: 746
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 1.75e1
  variant carriers: 425
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 4.75e1
  variant carriers: 788
num of homozygotes: 1
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

7-94740524-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740524
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740526
    reference: chr 7
allele count: 901
allele frequency: 1.502267573696145e-2
allele num: 59976
alternate allele: GTT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-35_1396-34dupTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-35_1396-34dupTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-35_1396-34dupTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-35_1396-34dupTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-35_1396-34dupTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-35_1396-34dupTT
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 2.25e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 1.75e1
  variant carriers: 306
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 1.25e1
  variant carriers: 251
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 3.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.25e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 5.25e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 1.25e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 22522
  bin: 2.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 1.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 6531
  bin: 9.75e1
  variant carriers: 263
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 7.5e0
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 38
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

7-94740524-G-GTTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740524
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740527
    reference: chr 7
allele count: 85
allele frequency: 1.417233560090703e-3
allele num: 59976
alternate allele: GTTT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-36_1396-34dupTTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-36_1396-34dupTTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-36_1396-34dupTTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-36_1396-34dupTTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-36_1396-34dupTTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-36_1396-34dupTTT
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 1.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6531
  bin: 9.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

7-94740524-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740524
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740523
    reference: chr 7
allele count: 11533
allele frequency: 1.922935841003068e-1
allele num: 59976
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-34delT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-34delT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-34delT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-34delT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-34delT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-34delT
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 1.75e1
  variant carriers: 2713
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 106
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 2.25e1
  variant carriers: 3438
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 1.25e1
  variant carriers: 1010
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 4.25e1
  variant carriers: 562
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 3.75e1
  variant carriers: 1135
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.25e1
  variant carriers: 1879
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.75e1
  variant carriers: 3012
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 4.75e1
  variant carriers: 331
genotype quality: GenotypeQuality
  all individuals: 6531
  bin: 9.75e1
  variant carriers: 1631
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 1.25e1
  variant carriers: 827
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 1.75e1
  variant carriers: 945
genotype quality: GenotypeQuality
  all individuals: 22522
  bin: 2.5e0
  variant carriers: 651
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 3.25e1
  variant carriers: 1020
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 7.25e1
  variant carriers: 438
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 328
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 8.75e1
  variant carriers: 261
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.25e1
  variant carriers: 212
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 5.25e1
  variant carriers: 788
genotype quality: GenotypeQuality
  all individuals: 1867
  bin: 4.75e1
  variant carriers: 826
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 545
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.25e1
  variant carriers: 1035
num of homozygotes: 1
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: GT
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum

7-94740524-GTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740524
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740522
    reference: chr 7
allele count: 163
allele frequency: 2.717753768173936e-3
allele num: 59976
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-35_1396-34delTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-35_1396-34delTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-35_1396-34delTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-35_1396-34delTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-35_1396-34delTT
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-35_1396-34delTT
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11682
  bin: 2.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 2.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6983
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 3.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2435
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 2.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1457
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 22522
  bin: 2.5e0
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1370
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 4.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 5.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2583
  bin: 7.5e0
  variant carriers: 33
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: GTT
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

7-94740525-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740525
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740525
    reference: chr 7
allele count: 16
allele frequency: 3.10077519379845e-3
allele num: 5160
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-46T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-46T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-46T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-46T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-46T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-46T>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5785
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 9.75e1
  variant carriers: 11
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP

7-94740528-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740528
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740528
    reference: chr 7
allele count: 1
allele frequency: 8.882888004548038e-6
allele num: 112576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-43T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-43T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-43T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-43T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-43T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-43T>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10235
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4682
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5895
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9368
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4328
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3492
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

7-94740534-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740534
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740534
    reference: chr 7
allele count: 2
allele frequency: 1.734485031394179e-5
allele num: 115308
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-37T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-37T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-37T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-37T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-37T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-37T>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6054
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1200
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7930
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5451
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff

6-31239647-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31239647
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31239646
    reference: chr 6
allele count: 339
allele frequency: 3.338980379796706e-3
allele num: 101528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000484378
  gene symbol: HLA-C
  hgvsc: ENST00000484378.1:n.93-3delC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365412
  ensembl transcript: ENST00000376237
  gene symbol: HLA-C
  hgvsc: ENST00000376237.4:c.74-3delC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000372819
  ensembl transcript: ENST00000383329
  gene symbol: HLA-C
  hgvsc: ENST00000383329.3:c.74-3delC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000365402
  ensembl transcript: ENST00000376228
  gene symbol: HLA-C
  hgvsc: ENST00000376228.5:c.74-3delC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000487245
  gene symbol: HLA-C
  hgvsc: ENST00000487245.1:n.180delC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204525
  ensembl protein: ENSP00000400410
  ensembl transcript: ENST00000415537
  gene symbol: HLA-C
  hgvsc: ENST00000415537.1:c.72-3delC
  variant of: http://identifiers.org/hgnc/4933
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204525
  ensembl transcript: ENST00000495835
  gene symbol: HLA-C
  hgvsc: ENST00000495835.1:n.260delC
  variant of: http://identifiers.org/hgnc/4933
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 3.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6223
  bin: 1.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 6568
  bin: 3.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 4.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 8718
  bin: 2.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 9441
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12974
  bin: 2.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 8.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 2.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 4.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 5270
  bin: 6.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 3.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 16990
  bin: 6.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 4.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 7.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 1.25e1
  variant carriers: 13
hgvs: c.74-3delC
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: TG
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

7-94740537-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740537
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740537
    reference: chr 7
allele count: 1
allele frequency: 8.6229197206174e-6
allele num: 115970
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-34T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-34T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-34T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-34T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-34T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-34T>C
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

7-94740537-T-TCTGTATTATTAACATAGCAACATAATGATATTAACA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740537
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740573
    reference: chr 7
allele count: 1
allele frequency: 8.6229197206174e-6
allele num: 115970
alternate allele: TCTGTATTATTAACATAGCAACATAATGATATTAACA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5187
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

7-94740537-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740537
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740536
    reference: chr 7
allele count: 8
allele frequency: 6.89833577649392e-5
allele num: 115970
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-33delC
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-33delC
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-33delC
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-33delC
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-33delC
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-33delC
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8402
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10301
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7486
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8685
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4525
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3421
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5187
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: TC
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

7-94740538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740538
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740538
    reference: chr 7
allele count: 778
allele frequency: 1.337873159994497e-2
allele num: 58152
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-33C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-33C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-33C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-33C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-33C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-33C>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12440
  bin: 2.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 8730
  bin: 1.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 5.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 7978
  bin: 3.25e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11585
  bin: 2.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 4942
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 4.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 4.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24100
  bin: 2.5e0
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 4.25e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 4.75e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1356
  bin: 6.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 5.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 1195
  bin: 5.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 2476
  bin: 7.5e0
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 4339
  bin: 2.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 1.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 2395
  bin: 3.75e1
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 1.25e1
  variant carriers: 47
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

7-94740540-G-GTATTATTAACATAGCAACATAATGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740540
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740565
    reference: chr 7
allele count: 1
allele frequency: 8.816009873931059e-6
allele num: 113430
alternate allele: GTATTATTAACATAGCAACATAATGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1629
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum

7-94740540-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740540
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740540
    reference: chr 7
allele count: 105
allele frequency: 9.256810367627612e-4
allele num: 113430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-31G>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-31G>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-31G>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-31G>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-31G>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-31G>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 14029
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 18176
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26041
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2508
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6348
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

7-94740541-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740541
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740541
    reference: chr 7
allele count: 2
allele frequency: 1.71124458818899e-5
allele num: 116874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-30T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-30T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-30T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-30T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-30T>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-30T>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7485
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15583
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30411
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2009
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

7-94740542-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740542
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740542
    reference: chr 7
allele count: 3
allele frequency: 2.587098999655054e-5
allele num: 115960
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-29A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-29A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-29A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-29A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-29A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-29A>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15999
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30444
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ

7-94740542-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740542
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740542
    reference: chr 7
allele count: 41
allele frequency: 3.53570196619524e-4
allele num: 115960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-29A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-29A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-29A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-29A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-29A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-29A>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 18891
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15999
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7472
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7008
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1082
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

7-94740543-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740543
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740543
    reference: chr 7
allele count: 3
allele frequency: 2.559421229545959e-5
allele num: 117214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-28T>C
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-28T>C
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4244
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1556
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33961
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2982
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

7-94740545-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740545
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740545
    reference: chr 7
allele count: 11
allele frequency: 9.408142319534725e-5
allele num: 116920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-26A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-26A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-26A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-26A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-26A>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-26A>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7598
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19676
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19395
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1105
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

7-94740546-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740546
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740546
    reference: chr 7
allele count: 1
allele frequency: 8.503690601721147e-6
allele num: 117596
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-25T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-25T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-25T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-25T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-25T>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-25T>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7612
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2171
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8008
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-94740547-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740547
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740547
    reference: chr 7
allele count: 1
allele frequency: 8.503256747334228e-6
allele num: 117602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-24C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-24C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-24C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-24C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-24C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-24C>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20956
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 757
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1858
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37502
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7925
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

7-94740557-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740557
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740557
    reference: chr 7
allele count: 2
allele frequency: 1.68044632654433e-5
allele num: 119016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-14G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-14G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-14G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-14G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-14G>A
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-14G>A
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23279
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 41007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

7-94740559-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740559
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740559
    reference: chr 7
allele count: 7
allele frequency: 5.870513250587051e-5
allele num: 119240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-12C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-12C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-12C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-12C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-12C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-12C>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21469
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 538
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 76
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

7-94740567-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740567
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740567
    reference: chr 7
allele count: 1
allele frequency: 8.34125752798492e-6
allele num: 119886
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1396-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1396-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1396-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1396-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1396-4A>G
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1396-4A>G
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21762
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7869
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1396-4A>G
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-94740578-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740578
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740578
    reference: chr 7
allele count: 3
allele frequency: 2.490370567140391e-5
allele num: 120464
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1403A>G
  hgvsp: ENSP00000402893.2:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1403A>G
  hgvsp: ENSP00000411342.1:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1403A>G
  hgvsp: ENSP00000344524.4:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1403A>G
  hgvsp: ENSP00000405514.1:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1403A>G
  hgvsp: ENSP00000289495.5:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1403A>G
  hgvsp: ENSP00000398870.1:p.Asn468Ser
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8412
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asn468Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

7-94740590-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740590
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740590
    reference: chr 7
allele count: 1
allele frequency: 8.278968109414843e-6
allele num: 120788
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1415A>G
  hgvsp: ENSP00000405514.1:p.Asn472Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1415A>G
  hgvsp: ENSP00000344524.4:p.Asn472Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1415A>G
  hgvsp: ENSP00000289495.5:p.Asn472Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1415A>G
  hgvsp: ENSP00000402893.2:p.Asn472Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1415A>G
  hgvsp: ENSP00000398870.1:p.Asn472Ser
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1415A>G
  hgvsp: ENSP00000411342.1:p.Asn472Ser
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7929
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8447
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asn472Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

7-94740597-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740597
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740597
    reference: chr 7
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1422C>G
  hgvsp: ENSP00000411342.1:p.Asp474Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1422C>G
  hgvsp: ENSP00000344524.4:p.Asp474Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1422C>G
  hgvsp: ENSP00000289495.5:p.Asp474Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1422C>G
  hgvsp: ENSP00000402893.2:p.Asp474Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1422C>G
  hgvsp: ENSP00000405514.1:p.Asp474Glu
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1422C>G
  hgvsp: ENSP00000398870.1:p.Asp474Glu
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8453
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp474Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

7-94740599-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740599
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740599
    reference: chr 7
allele count: 1
allele frequency: 8.268973158913126e-6
allele num: 120934
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1424A>G
  hgvsp: ENSP00000411342.1:p.Tyr475Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1424A>G
  hgvsp: ENSP00000402893.2:p.Tyr475Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1424A>G
  hgvsp: ENSP00000398870.1:p.Tyr475Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1424A>G
  hgvsp: ENSP00000405514.1:p.Tyr475Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1424A>G
  hgvsp: ENSP00000289495.5:p.Tyr475Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1424A>G
  hgvsp: ENSP00000344524.4:p.Tyr475Cys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr475Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum

7-94740615-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740615
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740615
    reference: chr 7
allele count: 1
allele frequency: 8.262414277451872e-6
allele num: 121030
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1440C>T
  hgvsp: ENST00000340694.4:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1440C>T
  hgvsp: ENST00000433360.1:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1440C>T
  hgvsp: ENST00000289495.5:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1440C>T
  hgvsp: ENST00000424654.1:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1440C>T
  hgvsp: ENST00000433881.1:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1440C>T
  hgvsp: ENST00000456331.2:c.1440C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2092
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp480Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

7-94740616-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740616
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740616
    reference: chr 7
allele count: 3
allele frequency: 2.4786833234186e-5
allele num: 121032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1441G>A
  hgvsp: ENSP00000344524.4:p.Glu481Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1441G>A
  hgvsp: ENSP00000398870.1:p.Glu481Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1441G>A
  hgvsp: ENSP00000405514.1:p.Glu481Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1441G>A
  hgvsp: ENSP00000411342.1:p.Glu481Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1441G>A
  hgvsp: ENSP00000402893.2:p.Glu481Lys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1441G>A
  hgvsp: ENSP00000289495.5:p.Glu481Lys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8422
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu481Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

7-94740635-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740635
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740635
    reference: chr 7
allele count: 87
allele frequency: 7.282894406402251e-4
allele num: 119458
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1460C>G
  hgvsp: ENSP00000344524.4:p.Ala487Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1460C>G
  hgvsp: ENSP00000289495.5:p.Ala487Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1460C>G
  hgvsp: ENSP00000411342.1:p.Ala487Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1460C>G
  hgvsp: ENSP00000398870.1:p.Ala487Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1460C>G
  hgvsp: ENSP00000402893.2:p.Ala487Gly
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1460C>G
  hgvsp: ENSP00000405514.1:p.Ala487Gly
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2149
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22334
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7773
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8157
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 42145
  bin: 6.25e1
  variant carriers: 2
hgvs: p.Ala487Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-94740637-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740637
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740637
    reference: chr 7
allele count: 2
allele frequency: 1.653411815280832e-5
allele num: 120962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1462T>A
  hgvsp: ENSP00000344524.4:p.Ser488Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1462T>A
  hgvsp: ENSP00000405514.1:p.Ser488Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1462T>A
  hgvsp: ENSP00000398870.1:p.Ser488Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1462T>A
  hgvsp: ENSP00000411342.1:p.Ser488Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1462T>A
  hgvsp: ENSP00000402893.2:p.Ser488Thr
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1462T>A
  hgvsp: ENSP00000289495.5:p.Ser488Thr
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser488Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

7-94740647-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740647
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740647
    reference: chr 7
allele count: 3
allele frequency: 2.480445818795165e-5
allele num: 120946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1472A>G
  hgvsp: ENSP00000398870.1:p.Tyr491Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1472A>G
  hgvsp: ENSP00000402893.2:p.Tyr491Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1472A>G
  hgvsp: ENSP00000405514.1:p.Tyr491Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1472A>G
  hgvsp: ENSP00000411342.1:p.Tyr491Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1472A>G
  hgvsp: ENSP00000344524.4:p.Tyr491Cys
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1472A>G
  hgvsp: ENSP00000289495.5:p.Tyr491Cys
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr491Cys
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

7-94740662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740662
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740662
    reference: chr 7
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1487G>A
  hgvsp: ENSP00000398870.1:p.Arg496His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1487G>A
  hgvsp: ENSP00000289495.5:p.Arg496His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1487G>A
  hgvsp: ENSP00000344524.4:p.Arg496His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1487G>A
  hgvsp: ENSP00000402893.2:p.Arg496His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1487G>A
  hgvsp: ENSP00000405514.1:p.Arg496His
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1487G>A
  hgvsp: ENSP00000411342.1:p.Arg496His
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg496His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

7-94740684-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740684
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740684
    reference: chr 7
allele count: 1
allele frequency: 8.29228651508367e-6
allele num: 120594
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1509C>T
  hgvsp: ENST00000433360.1:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1509C>T
  hgvsp: ENST00000433881.1:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1509C>T
  hgvsp: ENST00000456331.2:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1509C>T
  hgvsp: ENST00000424654.1:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1509C>T
  hgvsp: ENST00000340694.4:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1509C>T
  hgvsp: ENST00000289495.5:c.1509C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22779
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8206
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 42273
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe503Phe
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff

7-94740687-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740687
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740687
    reference: chr 7
allele count: 167
allele frequency: 1.385340279390782e-3
allele num: 120548
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1512A>G
  hgvsp: ENST00000340694.4:c.1512A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1512A>G
  hgvsp: ENST00000456331.2:c.1512A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1512A>G
  hgvsp: ENST00000289495.5:c.1512A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1512A>G
  hgvsp: ENST00000433360.1:c.1512A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1512A>G
  hgvsp: ENST00000424654.1:c.1512A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1512A>G
  hgvsp: ENST00000433881.1:c.1512A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 5.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 5.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22636
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22659
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7981
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro504Pro
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

7-94740696-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740696
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740696
    reference: chr 7
allele count: 1
allele frequency: 8.30813199960121e-6
allele num: 120364
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1521A>G
  hgvsp: ENST00000340694.4:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1521A>G
  hgvsp: ENST00000456331.2:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1521A>G
  hgvsp: ENST00000433360.1:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1521A>G
  hgvsp: ENST00000424654.1:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1521A>G
  hgvsp: ENST00000433881.1:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1521A>G
  hgvsp: ENST00000289495.5:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22718
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42295
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8098
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu507Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP

7-94740697-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740697
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740697
    reference: chr 7
allele count: 63
allele frequency: 5.235689116415132e-4
allele num: 120328
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1522G>C
  hgvsp: ENSP00000411342.1:p.Glu508Gln
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1522G>C
  hgvsp: ENSP00000289495.5:p.Glu508Gln
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1522G>C
  hgvsp: ENSP00000398870.1:p.Glu508Gln
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1522G>C
  hgvsp: ENSP00000402893.2:p.Glu508Gln
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1522G>C
  hgvsp: ENSP00000405514.1:p.Glu508Gln
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1522G>C
  hgvsp: ENSP00000344524.4:p.Glu508Gln
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7965
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22690
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 22331
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 9.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8079
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu508Gln
num of homozygotes: 1
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

7-94740707-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 94740707
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 94740707
    reference: chr 7
allele count: 2
allele frequency: 1.669337606837607e-5
allele num: 119808
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000405514
  ensembl transcript: ENST00000433360
  gene symbol: PPP1R9A
  hgvsc: ENST00000433360.1:c.1528+4C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000411342
  ensembl transcript: ENST00000424654
  gene symbol: PPP1R9A
  hgvsc: ENST00000424654.1:c.1528+4C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000402893
  ensembl transcript: ENST00000456331
  gene symbol: PPP1R9A
  hgvsc: ENST00000456331.2:c.1528+4C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000289495
  ensembl transcript: ENST00000289495
  gene symbol: PPP1R9A
  hgvsc: ENST00000289495.5:c.1528+4C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000344524
  ensembl transcript: ENST00000340694
  gene symbol: PPP1R9A
  hgvsc: ENST00000340694.4:c.1528+4C>T
  variant of: http://identifiers.org/hgnc/14946
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000158528
  ensembl protein: ENSP00000398870
  ensembl transcript: ENST00000433881
  gene symbol: PPP1R9A
  hgvsc: ENST00000433881.1:c.1528+4C>T
  variant of: http://identifiers.org/hgnc/14946
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22512
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1528+4C>T
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 729
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6862
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45500
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.608301e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

FS
type: SiteQuality
SIO_000300: 1.63e0

VQSLOD
type: SiteQuality
SIO_000300: -2.205e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.304e0

MQRankSum
type: SiteQuality
SIO_000300: -4.53e-1

QD
type: SiteQuality
SIO_000300: 6.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
all individuals: 360
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.648784253184099e-5
allele num: 10364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.606787e6

MQ
type: SiteQuality
SIO_000300: 5.84e1

QD
type: SiteQuality
SIO_000300: 1.123e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.985e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

FS
type: SiteQuality
SIO_000300: 1.792e0

GenotypeQuality
all individuals: 426
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1487
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46100
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 1.471e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

DP
type: SiteQuality
SIO_000300: 1.605459e6

QD
type: SiteQuality
SIO_000300: 1.156e1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.832e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

GenotypeQuality
all individuals: 445
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 309
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.604096e6

MQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.238e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.167e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

FS
type: SiteQuality
SIO_000300: 6.803e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45938
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6692
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.363e0

VQSLOD
type: SiteQuality
SIO_000300: 3.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.34e1

DP
type: SiteQuality
SIO_000300: 1.603e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 473
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502494140272853e-5
allele num: 66556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.144e0

QD
type: SiteQuality
SIO_000300: 1.141e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.488e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

DP
type: SiteQuality
SIO_000300: 1.602176e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.477e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

GenotypeQuality
all individuals: 321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 653
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

FS
type: SiteQuality
SIO_000300: 5.988e0

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.602242e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

QD
type: SiteQuality
SIO_000300: 1.357e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.244e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.416e0

GenotypeQuality
all individuals: 6448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.602676e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

VQSLOD
type: SiteQuality
SIO_000300: -1.873e0

GenotypeQuality
all individuals: 287
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47093
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6406
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.845e0

FS
type: SiteQuality
SIO_000300: 1.4793e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-2

DP
type: SiteQuality
SIO_000300: 1.603325e6

VQSLOD
type: SiteQuality
SIO_000300: -3.108e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.768e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.016e1

MQ
type: SiteQuality
SIO_000300: 5.896e1

GenotypeQuality
all individuals: 638
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 9.75e1
variant carriers: 51

GenotypeQuality
all individuals: 47220
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.650646593321752e-5
allele num: 10362
num of homozygotes: 0

East Asian
type: Population
allele count: 50
allele frequency: 5.789717461787865e-3
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66542
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.72e0

VQSLOD
type: SiteQuality
SIO_000300: 5.42e0

QD
type: SiteQuality
SIO_000300: 1.452e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

DP
type: SiteQuality
SIO_000300: 1.604755e6

GenotypeQuality
all individuals: 1149
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 47500
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502629601803156e-5
allele num: 66550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.274e0

QD
type: SiteQuality
SIO_000300: 9.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.23e-1

DP
type: SiteQuality
SIO_000300: 1.604131e6

MQ
type: SiteQuality
SIO_000300: 5.884e1

VQSLOD
type: SiteQuality
SIO_000300: -7.947e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 214
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 16

GenotypeQuality
all individuals: 274
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variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.70638194612958e-4
allele num: 16484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.23e-2

QD
type: SiteQuality
SIO_000300: 1.233e1

MQ
type: SiteQuality
SIO_000300: 5.962e1

FS
type: SiteQuality
SIO_000300: 5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

DP
type: SiteQuality
SIO_000300: 1.605378e6

GenotypeQuality
all individuals: 652
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 251
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variant carriers: 0

GenotypeQuality
all individuals: 48010
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.042390548992356e-3
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

QD
type: SiteQuality
SIO_000300: 1.387e1

MQ
type: SiteQuality
SIO_000300: 5.965e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.07e-1

DP
type: SiteQuality
SIO_000300: 1.606658e6

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

GenotypeQuality
all individuals: 643
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
all individuals: 208
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variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503081316699233e-5
allele num: 66530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.607385e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.396e0

QD
type: SiteQuality
SIO_000300: 1.292e1

VQSLOD
type: SiteQuality
SIO_000300: -1.864e0

MQ
type: SiteQuality
SIO_000300: 5.865e1

GenotypeQuality
all individuals: 48532
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6342
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variant carriers: 0

GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 69
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GenotypeQuality
all individuals: 1020
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GenotypeQuality
all individuals: 336
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GenotypeQuality
all individuals: 1136
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variant carriers: 0

GenotypeQuality
all individuals: 1297
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variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.896e1

DP
type: SiteQuality
SIO_000300: 1.607578e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

FS
type: SiteQuality
SIO_000300: 3.018e0

QD
type: SiteQuality
SIO_000300: 9.65e0

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.609e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 48663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 249
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GenotypeQuality
all individuals: 6338
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.654373431164318e-5
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.5e0

FS
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 1.607854e6

MQRankSum
type: SiteQuality
SIO_000300: -1.341e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

QD
type: SiteQuality
SIO_000300: 1.264e1

VQSLOD
type: SiteQuality
SIO_000300: -3.258e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
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GenotypeQuality
all individuals: 636
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variant carriers: 0

GenotypeQuality
all individuals: 302
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GenotypeQuality
all individuals: 247
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GenotypeQuality
all individuals: 59
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

FS
type: SiteQuality
SIO_000300: 5.148e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.883e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 1.608507e6

MQ
type: SiteQuality
SIO_000300: 5.946e1

QD
type: SiteQuality
SIO_000300: 1.205e1

VQSLOD
type: SiteQuality
SIO_000300: 6.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.98e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.75e1
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GenotypeQuality
all individuals: 1020
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 118
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variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.337e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-1

DP
type: SiteQuality
SIO_000300: 1.607911e6

FS
type: SiteQuality
SIO_000300: 8.853e0

VQSLOD
type: SiteQuality
SIO_000300: -5.832000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 246
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GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 80
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GenotypeQuality
all individuals: 1288
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504890895410083e-5
allele num: 66450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.352918438345574e-3
allele num: 10348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.607785e6

FS
type: SiteQuality
SIO_000300: 1.094e0

QD
type: SiteQuality
SIO_000300: 1.356e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.86e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.9e-1

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 624
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GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 7.25e1
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GenotypeQuality
all individuals: 1017
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variant carriers: 14

GenotypeQuality
all individuals: 56
bin: 3.75e1
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GenotypeQuality
all individuals: 237
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 13
allele frequency: 1.259201859744285e-3
allele num: 10324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.53e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.4e-2

FS
type: SiteQuality
SIO_000300: 2.722e0

DP
type: SiteQuality
SIO_000300: 1.604074e6

VQSLOD
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.571e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: -3.19e-1

GenotypeQuality
all individuals: 6033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 9.75e1
variant carriers: 21

GenotypeQuality
all individuals: 598
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.95388823759281e-4
allele num: 10236
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.609603340292275e-4
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.129471890971039e-4
allele num: 65744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16194
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.028467595396729e-4
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.812e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.57e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.46e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.81e0

DP
type: SiteQuality
SIO_000300: 1.588831e6

GenotypeQuality
all individuals: 971
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5543
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43767
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variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
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variant carriers: 0

GenotypeQuality
all individuals: 5073
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 9.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14690
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.744958481613286e-4
allele num: 8430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.253e1

DP
type: SiteQuality
SIO_000300: 1.517472e6

MQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.272e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

FS
type: SiteQuality
SIO_000300: 2.877e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 269
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28043
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
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variant carriers: 0

GenotypeQuality
all individuals: 3704
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variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.268713524486171e-4
allele num: 7882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

DP
type: SiteQuality
SIO_000300: 1.25776e6

MQ
type: SiteQuality
SIO_000300: 5.849e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

FS
type: SiteQuality
SIO_000300: 2.504e0

VQSLOD
type: SiteQuality
SIO_000300: -1.893e0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

QD
type: SiteQuality
SIO_000300: 1.516e1

GenotypeQuality
all individuals: 317
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15089
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3533
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.717209877391215e-5
allele num: 58234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10774
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.271e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

DP
type: SiteQuality
SIO_000300: 1.231051e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

MQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

GenotypeQuality
all individuals: 4058
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 985
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2313
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55952
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.945525291828794e-4
allele num: 10280
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

QD
type: SiteQuality
SIO_000300: 9.92e0

DP
type: SiteQuality
SIO_000300: 1.065298e6

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

VQSLOD
type: SiteQuality
SIO_000300: -2.156e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
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variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5226
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variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.25281884239539e-4
allele num: 7982
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 9.22663e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.97e0

QD
type: SiteQuality
SIO_000300: 9.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2973
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10502
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
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variant carriers: 0

GenotypeQuality
all individuals: 4795
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variant carriers: 0

GenotypeQuality
all individuals: 203
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variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.051524710830704e-4
allele num: 9510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6798
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.699999999999999e-3

QD
type: SiteQuality
SIO_000300: 1.649e1

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.11401e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1191
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variant carriers: 0

GenotypeQuality
all individuals: 3894
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.395497569710924e-5
allele num: 15636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.840886e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.337e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3894
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GenotypeQuality
all individuals: 2748
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.777678685182826e-5
allele num: 62792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -4.85e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 1.548e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.337e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.32e-1

DP
type: SiteQuality
SIO_000300: 1.840886e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 760
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variant carriers: 0

GenotypeQuality
all individuals: 2944
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9308
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.248751248751249e-4
allele num: 8008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
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ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.42e-1

MQ
type: SiteQuality
SIO_000300: 5.882e1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

QD
type: SiteQuality
SIO_000300: 2.965e1

DP
type: SiteQuality
SIO_000300: 1.84394e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.864e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2697
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10065
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2996
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 705
bin: 5.75e1
variant carriers: 2

Other
type: Population
allele count: 1
allele frequency: 1.184834123222749e-3
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15368
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.259128682951398e-4
allele num: 7942
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.324324324324324e-4
allele num: 9250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.86710064129419e-4
allele num: 62062
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.100837277029486e-5
allele num: 10988
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.5554e1

DP
type: SiteQuality
SIO_000300: 1.847046e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQ
type: SiteQuality
SIO_000300: 5.755e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

QD
type: SiteQuality
SIO_000300: 8.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.071e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 2624
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10065
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2996
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2046
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.259128682951398e-4
allele num: 7942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.611291933872579e-5
allele num: 62062
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.755e1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.01e-2

FS
type: SiteQuality
SIO_000300: 1.5554e1

QD
type: SiteQuality
SIO_000300: 8.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.071e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 1.847046e6

GenotypeQuality
all individuals: 1457
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1804
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1867
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2583
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 7.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.374873834827525e-4
allele num: 33686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5386
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.813565469713457e-4
allele num: 5514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3820
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.979e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.543423e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

GenotypeQuality
all individuals: 2583
bin: 7.5e0
variant carriers: 373

GenotypeQuality
all individuals: 1457
bin: 6.25e1
variant carriers: 650

GenotypeQuality
all individuals: 1000
bin: 8.25e1
variant carriers: 564

GenotypeQuality
all individuals: 6531
bin: 9.75e1
variant carriers: 4430

GenotypeQuality
all individuals: 913
bin: 8.75e1
variant carriers: 574

GenotypeQuality
all individuals: 2257
bin: 2.75e1
variant carriers: 562

GenotypeQuality
all individuals: 1586
bin: 5.75e1
variant carriers: 752

South Asian
type: Population
allele count: 1729
allele frequency: 2.586000598265031e-1
allele num: 6686
num of homozygotes: 0

Other
type: Population
allele count: 94
allele frequency: 2.146118721461187e-1
allele num: 438
num of homozygotes: 0

African
type: Population
allele count: 1312
allele frequency: 2.379397896264055e-1
allele num: 5514
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 7603
allele frequency: 2.257020720774209e-1
allele num: 33686
num of homozygotes: 0

East Asian
type: Population
allele count: 1054
allele frequency: 2.370670265407107e-1
allele num: 4446
num of homozygotes: 0

Latino
type: Population
allele count: 1155
allele frequency: 2.14444857036762e-1
allele num: 5386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 697
allele frequency: 1.824607329842932e-1
allele num: 3820
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.979e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

QD
type: SiteQuality
SIO_000300: 2.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

DP
type: SiteQuality
SIO_000300: 1.543423e6

GenotypeQuality
all individuals: 1973
bin: 4.25e1
variant carriers: 39

GenotypeQuality
all individuals: 1294
bin: 7.25e1
variant carriers: 54

GenotypeQuality
all individuals: 1457
bin: 6.25e1
variant carriers: 54

GenotypeQuality
all individuals: 1867
bin: 4.75e1
variant carriers: 67

GenotypeQuality
all individuals: 1055
bin: 7.75e1
variant carriers: 40

GenotypeQuality
all individuals: 1586
bin: 5.75e1
variant carriers: 49

GenotypeQuality
all individuals: 913
bin: 8.75e1
variant carriers: 37

European (Finnish)
type: Population
allele count: 45
allele frequency: 1.178010471204189e-2
allele num: 3820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 434
allele frequency: 1.288369055393932e-2
allele num: 33686
num of homozygotes: 0

South Asian
type: Population
allele count: 148
allele frequency: 2.213580616212982e-2
allele num: 6686
num of homozygotes: 0

Latino
type: Population
allele count: 103
allele frequency: 1.912365391756405e-2
allele num: 5386
num of homozygotes: 0

African
type: Population
allele count: 85
allele frequency: 1.541530649256438e-2
allele num: 5514
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 1.36986301369863e-2
allele num: 438
num of homozygotes: 0

East Asian
type: Population
allele count: 80
allele frequency: 1.799370220422852e-2
allele num: 4446
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.979e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

DP
type: SiteQuality
SIO_000300: 1.543423e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2257
bin: 2.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1973
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 781
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 22522
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 1294
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1457
bin: 6.25e1
variant carriers: 6

GenotypeQuality
all individuals: 913
bin: 8.75e1
variant carriers: 2

South Asian
type: Population
allele count: 13
allele frequency: 1.944361352078971e-3
allele num: 6686
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 4.5662100456621e-3
allele num: 438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 1.039007302737042e-3
allele num: 33686
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.670998886000743e-3
allele num: 5386
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 2.357635110627494e-3
allele num: 5514
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 1.349527665317139e-3
allele num: 4446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.832460732984293e-3
allele num: 3820
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.543423e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.979e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

GenotypeQuality
all individuals: 2257
bin: 2.75e1
variant carriers: 1028

GenotypeQuality
all individuals: 2583
bin: 7.5e0
variant carriers: 814

GenotypeQuality
all individuals: 1973
bin: 4.25e1
variant carriers: 926

GenotypeQuality
all individuals: 2183
bin: 3.75e1
variant carriers: 1045

GenotypeQuality
all individuals: 1055
bin: 7.75e1
variant carriers: 373

GenotypeQuality
all individuals: 1586
bin: 5.75e1
variant carriers: 689

GenotypeQuality
all individuals: 1370
bin: 6.75e1
variant carriers: 517

African
type: Population
allele count: 945
allele frequency: 1.713819368879217e-1
allele num: 5514
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 706
allele frequency: 1.848167539267016e-1
allele num: 3820
num of homozygotes: 0

East Asian
type: Population
allele count: 886
allele frequency: 1.992802519118309e-1
allele num: 4446
num of homozygotes: 0

Other
type: Population
allele count: 78
allele frequency: 1.780821917808219e-1
allele num: 438
num of homozygotes: 0

Latino
type: Population
allele count: 1075
allele frequency: 1.995915336056443e-1
allele num: 5386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6721
allele frequency: 1.995190880484474e-1
allele num: 33686
num of homozygotes: 0

South Asian
type: Population
allele count: 1122
allele frequency: 1.678133413102004e-1
allele num: 6686
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.979e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 2.24e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

DP
type: SiteQuality
SIO_000300: 1.543423e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
all individuals: 2293
bin: 3.25e1
variant carriers: 22

GenotypeQuality
all individuals: 6531
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1867
bin: 4.75e1
variant carriers: 7

GenotypeQuality
all individuals: 781
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1055
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1294
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 2041
bin: 1.25e1
variant carriers: 17

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.047120418848168e-3
allele num: 3820
num of homozygotes: 0

African
type: Population
allele count: 15
allele frequency: 2.720348204570185e-3
allele num: 5514
num of homozygotes: 0

Latino
type: Population
allele count: 20
allele frequency: 3.713330857779428e-3
allele num: 5386
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 3.140891414896799e-3
allele num: 6686
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 2.699055330634278e-3
allele num: 4446
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.28310502283105e-3
allele num: 438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 90
allele frequency: 2.671733064180966e-3
allele num: 33686
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.979e-1

DP
type: SiteQuality
SIO_000300: 1.543423e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.24e0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 432
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 6.0e-3
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 4.551820728291317e-3
allele num: 2856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.718e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

QD
type: SiteQuality
SIO_000300: 2.17e0

MQ
type: SiteQuality
SIO_000300: 5.792e1

MQRankSum
type: SiteQuality
SIO_000300: -1.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.678e-1

FS
type: SiteQuality
SIO_000300: 3.9253e1

VQSLOD
type: SiteQuality
SIO_000300: 1.588e1

DP
type: SiteQuality
SIO_000300: 9.31693e5

GenotypeQuality
all individuals: 5509
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3778
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.732193348592971e-5
allele num: 14854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10850
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.919e0

MQ
type: SiteQuality
SIO_000300: 6.049e1

DP
type: SiteQuality
SIO_000300: 1.843681e6

FS
type: SiteQuality
SIO_000300: 1.456e0

VQSLOD
type: SiteQuality
SIO_000300: -3.303e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-2

GenotypeQuality
all individuals: 217
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4802
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2870
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3968
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16509
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4306
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.139027529271432e-5
allele num: 63714
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.59e-1

QD
type: SiteQuality
SIO_000300: 3.503e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

DP
type: SiteQuality
SIO_000300: 1.856225e6

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

GenotypeQuality
all individuals: 8875
bin: 2.25e1
variant carriers: 11

GenotypeQuality
all individuals: 457
bin: 5.75e1
variant carriers: 19

GenotypeQuality
all individuals: 2776
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 698
bin: 1.75e1
variant carriers: 11

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 16

GenotypeQuality
all individuals: 3875
bin: 3.25e1
variant carriers: 11

GenotypeQuality
all individuals: 729
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 638
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 4604
bin: 9.75e1
variant carriers: 135

GenotypeQuality
all individuals: 1613
bin: 7.25e1
variant carriers: 20

GenotypeQuality
all individuals: 870
bin: 5.25e1
variant carriers: 10

African
type: Population
allele count: 25
allele frequency: 3.473186996387885e-3
allele num: 7198
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.340482573726542e-3
allele num: 746
num of homozygotes: 0

South Asian
type: Population
allele count: 17
allele frequency: 1.093388217134036e-3
allele num: 15548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 249
allele frequency: 4.455179817498658e-3
allele num: 55890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 16
allele frequency: 3.157063930544594e-3
allele num: 5068
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 4.095004095004095e-4
allele num: 7326
num of homozygotes: 0

Latino
type: Population
allele count: 28
allele frequency: 2.871205906480722e-3
allele num: 9752
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

QD
type: SiteQuality
SIO_000300: 1.98e0

VQSLOD
type: SiteQuality
SIO_000300: -3.262e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.238e1

FS
type: SiteQuality
SIO_000300: 3.0687e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.748e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 1.402156e6

GenotypeQuality
all individuals: 991
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2869
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.049317943336831e-4
allele num: 9530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.106e0

QD
type: SiteQuality
SIO_000300: 9.9e-1

DP
type: SiteQuality
SIO_000300: 1.878913e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 3.1612e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.73e0

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQ
type: SiteQuality
SIO_000300: 5.889e1

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1349
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1181
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563086157308991e-5
allele num: 63976
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

DP
type: SiteQuality
SIO_000300: 1.878913e6

FS
type: SiteQuality
SIO_000300: 3.1612e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

MQ
type: SiteQuality
SIO_000300: 5.889e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.106e0

VQSLOD
type: SiteQuality
SIO_000300: -3.73e0

QD
type: SiteQuality
SIO_000300: 9.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
all individuals: 301
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 2869
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 706
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22600
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1885
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 587
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.689258471926972e-5
allele num: 63976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.792435920415845e-4
allele num: 11158
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.916687963199591e-4
allele num: 15652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9530
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

QD
type: SiteQuality
SIO_000300: 9.9e-1

DP
type: SiteQuality
SIO_000300: 1.878913e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.106e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

VQSLOD
type: SiteQuality
SIO_000300: -3.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.71e-1

FS
type: SiteQuality
SIO_000300: 3.1612e1

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

GenotypeQuality
all individuals: 437
bin: 7.25e1
variant carriers: 29

GenotypeQuality
all individuals: 2956
bin: 3.25e1
variant carriers: 56

GenotypeQuality
all individuals: 2685
bin: 2.75e1
variant carriers: 42

GenotypeQuality
all individuals: 7554
bin: 6.25e1
variant carriers: 34

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 21

GenotypeQuality
all individuals: 986
bin: 9.75e1
variant carriers: 252

GenotypeQuality
all individuals: 207
bin: 9.25e1
variant carriers: 21

African
type: Population
allele count: 76
allele frequency: 1.59798149705635e-2
allele num: 4756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 420
allele frequency: 1.190071404284257e-2
allele num: 35292
num of homozygotes: 0

South Asian
type: Population
allele count: 82
allele frequency: 1.519081141163394e-2
allele num: 5398
num of homozygotes: 0

East Asian
type: Population
allele count: 57
allele frequency: 1.251646903820817e-2
allele num: 4554
num of homozygotes: 0

Latino
type: Population
allele count: 81
allele frequency: 2.36013986013986e-2
allele num: 3432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 58
allele frequency: 1.337638376383764e-2
allele num: 4336
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 1.041666666666667e-2
allele num: 384
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.32e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: -3.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.695e0

DP
type: SiteQuality
SIO_000300: 1.681466e6

QD
type: SiteQuality
SIO_000300: 2.11e0

FS
type: SiteQuality
SIO_000300: 4.3742e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.258e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.41e-1

GenotypeQuality
all individuals: 26041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590684948939013e-5
allele num: 62866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.564236e6

FS
type: SiteQuality
SIO_000300: 4.4399e1

MQRankSum
type: SiteQuality
SIO_000300: -9.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.607e0

MQ
type: SiteQuality
SIO_000300: 5.803e1

QD
type: SiteQuality
SIO_000300: 5.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
all individuals: 2636
bin: 9.75e1
variant carriers: 98

GenotypeQuality
all individuals: 737
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 423
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1026
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 505
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1629
bin: 4.25e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.21654501216545e-4
allele num: 8220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 84
allele frequency: 1.336175357108771e-3
allele num: 62866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.716818914562064e-5
allele num: 14888
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 2.033390410958904e-3
allele num: 9344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.4399e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

MQ
type: SiteQuality
SIO_000300: 5.803e1

DP
type: SiteQuality
SIO_000300: 1.564236e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.641e0

VQSLOD
type: SiteQuality
SIO_000300: -2.607e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

MQRankSum
type: SiteQuality
SIO_000300: -9.3e-1

QD
type: SiteQuality
SIO_000300: 5.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

GenotypeQuality
all individuals: 644
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2920
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7380
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11196
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.19703136222169e-4
allele num: 8354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.547748026621266e-5
allele num: 64610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.509e0

VQSLOD
type: SiteQuality
SIO_000300: 5.99e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.56834e6

QD
type: SiteQuality
SIO_000300: 1.1e1

GenotypeQuality
all individuals: 578
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7008
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.676830979328407e-5
allele num: 64146
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.406e0

DP
type: SiteQuality
SIO_000300: 1.574076e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.206e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 4.14e0

FS
type: SiteQuality
SIO_000300: 2.7972e1

MQ
type: SiteQuality
SIO_000300: 5.893e1

GenotypeQuality
all individuals: 1211
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 440
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 30444
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 482
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 5.75e1
variant carriers: 3

African
type: Population
allele count: 7
allele frequency: 7.311468560685189e-4
allele num: 9574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 32
allele frequency: 4.988619711283635e-4
allele num: 64146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.459948320413436e-5
allele num: 15480
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.976660682226212e-5
allele num: 11140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.7972e1

DP
type: SiteQuality
SIO_000300: 1.574076e6

QD
type: SiteQuality
SIO_000300: 4.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.206e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.893e1

MQRankSum
type: SiteQuality
SIO_000300: -7.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.406e0

GenotypeQuality
all individuals: 131
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7756
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.905245776705195e-4
allele num: 15746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64768
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11222
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 1.254e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.5e-1

QD
type: SiteQuality
SIO_000300: 1.145e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

DP
type: SiteQuality
SIO_000300: 1.587955e6

GenotypeQuality
all individuals: 672
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1892
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7551
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.031991744066047e-4
allele num: 9690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.390820584144645e-4
allele num: 64710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.933357155619081e-5
allele num: 11194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.3111e1

VQSLOD
type: SiteQuality
SIO_000300: -3.786e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.239e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

QD
type: SiteQuality
SIO_000300: 4.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e0

DP
type: SiteQuality
SIO_000300: 1.603849e6

GenotypeQuality
all individuals: 986
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2009
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37059
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.526251526251526e-4
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64960
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

MQ
type: SiteQuality
SIO_000300: 5.939e1

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.33e-1

DP
type: SiteQuality
SIO_000300: 1.610912e6

FS
type: SiteQuality
SIO_000300: 1.371e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.66e-1

GenotypeQuality
all individuals: 1984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1050
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2681
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.026272577996716e-4
allele num: 9744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.257e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.042e0

DP
type: SiteQuality
SIO_000300: 1.618663e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

GenotypeQuality
all individuals: 1922
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.046458492003047e-5
allele num: 65650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.76e-1

FS
type: SiteQuality
SIO_000300: 3.62e0

VQSLOD
type: SiteQuality
SIO_000300: -2.53e0

QD
type: SiteQuality
SIO_000300: 2.156e1

MQRankSum
type: SiteQuality
SIO_000300: 4.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.613e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

DP
type: SiteQuality
SIO_000300: 1.651304e6

GenotypeQuality
all individuals: 245
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41355
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8326
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10062
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.235294117647059e-4
allele num: 8500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.117e0

MQRankSum
type: SiteQuality
SIO_000300: 7.3e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.655949e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.74e-1

FS
type: SiteQuality
SIO_000300: 6.968e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8369
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42111
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514279657167086e-5
allele num: 66038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16304
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.233000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.214e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

DP
type: SiteQuality
SIO_000300: 1.665283e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.19e-1

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1927
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.50385423966363e-4
allele num: 8562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.173e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.26e-1

DP
type: SiteQuality
SIO_000300: 1.673139e6

MQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

FS
type: SiteQuality
SIO_000300: 1.0726e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.5e-1

QD
type: SiteQuality
SIO_000300: 1.638e1

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42868
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.742787200559538e-5
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

DP
type: SiteQuality
SIO_000300: 1.677579e6

FS
type: SiteQuality
SIO_000300: 1.0318e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.17e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: -7.639e-1

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2088
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42970
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.072382803011902e-5
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.322e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

DP
type: SiteQuality
SIO_000300: 1.679135e6

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42977
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8458
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.679373e6

FS
type: SiteQuality
SIO_000300: 9.88e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.417e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.368e0

VQSLOD
type: SiteQuality
SIO_000300: 2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

MQRankSum
type: SiteQuality
SIO_000300: -8.35e-1

GenotypeQuality
all individuals: 2606
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42789
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8425
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50195253829979e-5
allele num: 66580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.680593e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.05e-1

QD
type: SiteQuality
SIO_000300: 9.949999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-2

FS
type: SiteQuality
SIO_000300: 3.201e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQ
type: SiteQuality
SIO_000300: 5.902e1

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.887947631882942e-4
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.680743e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.494e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.82e-1

QD
type: SiteQuality
SIO_000300: 1.306e1

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2398
bin: 9.75e1
variant carriers: 59

GenotypeQuality
all individuals: 1810
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 541
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 464
bin: 8.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.097893432465923e-4
allele num: 6456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 7.008989791253999e-4
allele num: 65630
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.753501400560224e-5
allele num: 11424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16198001394376e-4
allele num: 8606
num of homozygotes: 0

African
type: Population
allele count: 37
allele frequency: 3.707414829659319e-3
allele num: 9980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.436e2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

FS
type: SiteQuality
SIO_000300: 2.27442e2

MQ
type: SiteQuality
SIO_000300: 5.829e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.94e0

QD
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

DP
type: SiteQuality
SIO_000300: 1.722966e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.275e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.566e0

GenotypeQuality
all individuals: 610
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1131
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8357
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.926040061633282e-4
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.729e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.738e0

QD
type: SiteQuality
SIO_000300: 1.154e1

DP
type: SiteQuality
SIO_000300: 1.681623e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.44e-1

GenotypeQuality
all individuals: 324
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8334
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 609
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.508972855983407e-5
allele num: 66534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.681356e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.34e0

FS
type: SiteQuality
SIO_000300: 5.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.29e-1

QD
type: SiteQuality
SIO_000300: 1.615e1

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8258
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42457
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503759398496241e-5
allele num: 66500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: -1.919e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.680389e6

FS
type: SiteQuality
SIO_000300: 1.6658e1

QD
type: SiteQuality
SIO_000300: 1.047e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.492e0

GenotypeQuality
all individuals: 83
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1123
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506069459923492e-5
allele num: 66398
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.413999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.676744e6

MQRankSum
type: SiteQuality
SIO_000300: -1.236e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.99e-1

FS
type: SiteQuality
SIO_000300: 1.433e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 9.75e1
variant carriers: 167

GenotypeQuality
all individuals: 1112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42244
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.759324419422942e-4
allele num: 11368
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.833720030935808e-4
allele num: 10344
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.106497313141182e-5
allele num: 16376
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516070345664039e-4
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 156
allele frequency: 2.350388718134153e-3
allele num: 66372
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.679257e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e-1

QD
type: SiteQuality
SIO_000300: 1.308e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

MQ
type: SiteQuality
SIO_000300: 5.946e1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
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GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 1102
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1937
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2569
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509388395822013e-5
allele num: 66252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.302e-1

FS
type: SiteQuality
SIO_000300: 4.967e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.215e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.91e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.44e0

DP
type: SiteQuality
SIO_000300: 1.670496e6

GenotypeQuality
all individuals: 1093
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42213
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516530178950561e-4
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 8.455638098689376e-4
allele num: 66228
num of homozygotes: 1

South Asian
type: Population
allele count: 6
allele frequency: 3.671071953010279e-4
allele num: 16344
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.24e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.59e-1

DP
type: SiteQuality
SIO_000300: 1.670714e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.34e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

QD
type: SiteQuality
SIO_000300: 1.409e1