7-5266760-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266760
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266760
    reference: chr 7
allele count: 1
allele frequency: 8.392359595823962e-6
allele num: 119156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-51G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-51G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-51G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-51G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-51G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-51G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1180G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13863
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ

7-5266766-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266766
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266766
    reference: chr 7
allele count: 1
allele frequency: 8.388135820695209e-6
allele num: 119216
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-45C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-45C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-45C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-45C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-45C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1186C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-45C>G
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9502
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3473
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4288
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

7-5266767-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266767
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266767
    reference: chr 7
allele count: 9
allele frequency: 7.547169811320755e-5
allele num: 119250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-44C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-44C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-44C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-44C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-44C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-44C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1187C>G
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3470
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-5266767-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266767
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266766
    reference: chr 7
allele count: 2
allele frequency: 1.677148846960168e-5
allele num: 119250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-43delA
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-43delA
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-43delA
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-43delA
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1188delA
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-43delA
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-43delA
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2084
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14896
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: CA
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ

7-5266768-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266768
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266768
    reference: chr 7
allele count: 1
allele frequency: 8.385322331790435e-6
allele num: 119256
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-43A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1188A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-43A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-43A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-43A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-43A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-43A>G
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9502
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5039
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14154
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3427
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7380
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

7-5266773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266773
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266773
    reference: chr 7
allele count: 2
allele frequency: 1.675266367352409e-5
allele num: 119384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-38G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-38G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-38G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-38G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-38G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-38G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1193G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5289
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10976
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1462
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15994
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14155
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

7-5266789-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266789
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266789
    reference: chr 7
allele count: 1
allele frequency: 8.346688034188035e-6
allele num: 119808
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1209G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-22G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 983
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14153
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7689
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-5266793-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266793
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266793
    reference: chr 7
allele count: 4
allele frequency: 3.3358908496514e-5
allele num: 119908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1213G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-18G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-18G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3512
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9668
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2404
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17648
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

7-5266803-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266803
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266803
    reference: chr 7
allele count: 1
allele frequency: 8.320852055250457e-6
allele num: 120180
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-8C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-8C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-8C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-8C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-8C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-8C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1223C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9871
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3444
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4368
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
hgvs: c.849-8C>T
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

7-5266807-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266807
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266807
    reference: chr 7
allele count: 1
allele frequency: 8.314763694415805e-6
allele num: 120268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1227C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11319
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3514
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17917
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.75e1
  variant carriers: 0
hgvs: c.849-4C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

7-5266808-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266808
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266808
    reference: chr 7
allele count: 2
allele frequency: 1.662786830728301e-5
allele num: 120280
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.795-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.672-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1184-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.849-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1228C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.795-3C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.849-3C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11334
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14162
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5164
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4382
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17976
  bin: 6.25e1
  variant carriers: 0
hgvs: c.849-3C>T
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

7-5266813-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266813
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266813
    reference: chr 7
allele count: 1
allele frequency: 8.305509875251242e-6
allele num: 120402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.851C>T
  hgvsp: ENSP00000385297.3:p.Pro284Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.797C>T
  hgvsp: ENSP00000384945.3:p.Pro266Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.851C>T
  hgvsp: ENSP00000288828.4:p.Pro284Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1233C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1186C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.674C>T
  hgvsp: ENSP00000429654.1:p.Pro225Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.797C>T
  hgvsp: ENSP00000371821.2:p.Pro266Leu
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11386
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9556
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7841
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro284Leu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

7-5266814-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266814
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266814
    reference: chr 7
allele count: 1
allele frequency: 8.305096006909839e-6
allele num: 120408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.852C>G
  hgvsp: ENST00000288828.4:c.852C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1234C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.675C>G
  hgvsp: ENST00000484262.1:c.675C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.852C>G
  hgvsp: ENST00000404704.3:c.852C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.798C>G
  hgvsp: ENST00000401525.3:c.798C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.798C>G
  hgvsp: ENST00000382384.2:c.798C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1187C>G
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11431
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3617
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro284Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

7-5266821-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266821
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266821
    reference: chr 7
allele count: 1
allele frequency: 8.296276631047985e-6
allele num: 120536
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.805G>A
  hgvsp: ENSP00000371821.2:p.Glu269Lys
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.682G>A
  hgvsp: ENSP00000429654.1:p.Glu228Lys
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.859G>A
  hgvsp: ENSP00000288828.4:p.Glu287Lys
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.805G>A
  hgvsp: ENSP00000384945.3:p.Glu269Lys
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1194G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1241G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.859G>A
  hgvsp: ENSP00000385297.3:p.Glu287Lys
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3515
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11486
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2219
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18457
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu287Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

7-5266829-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266829
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266829
    reference: chr 7
allele count: 11
allele frequency: 9.117281392457521e-5
allele num: 120650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.813C>T
  hgvsp: ENST00000382384.2:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.690C>T
  hgvsp: ENST00000484262.1:c.690C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1249C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.813C>T
  hgvsp: ENST00000401525.3:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.867C>T
  hgvsp: ENST00000288828.4:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1202C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.867C>T
  hgvsp: ENST00000404704.3:c.867C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3516
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11511
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr289Thr
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

7-5266838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266838
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266838
    reference: chr 7
allele count: 5
allele frequency: 4.142570713682082e-5
allele num: 120698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.699C>T
  hgvsp: ENST00000484262.1:c.699C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.876C>T
  hgvsp: ENST00000288828.4:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.822C>T
  hgvsp: ENST00000382384.2:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1258C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1211C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.822C>T
  hgvsp: ENST00000401525.3:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.876C>T
  hgvsp: ENST00000404704.3:c.876C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3639
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7909
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14166
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Thr292Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

7-5266839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266839
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266839
    reference: chr 7
allele count: 2
allele frequency: 1.656753756689143e-5
allele num: 120718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1212G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.823G>A
  hgvsp: ENSP00000371821.2:p.Gly275Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.877G>A
  hgvsp: ENSP00000385297.3:p.Gly293Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.700G>A
  hgvsp: ENSP00000429654.1:p.Gly234Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.823G>A
  hgvsp: ENSP00000384945.3:p.Gly275Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.877G>A
  hgvsp: ENSP00000288828.4:p.Gly293Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1259G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7924
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5226
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly293Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-5266839-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266839
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266839
    reference: chr 7
allele count: 1
allele frequency: 8.283768783445716e-6
allele num: 120718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1259G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.877G>C
  hgvsp: ENSP00000288828.4:p.Gly293Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.823G>C
  hgvsp: ENSP00000384945.3:p.Gly275Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.877G>C
  hgvsp: ENSP00000385297.3:p.Gly293Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.700G>C
  hgvsp: ENSP00000429654.1:p.Gly234Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.823G>C
  hgvsp: ENSP00000371821.2:p.Gly275Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1212G>C
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10386
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3644
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5226
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly293Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/7-5266847-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266847
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266847
    reference: chr 7
allele count: 2
allele frequency: 1.656424442199069e-5
allele num: 120742
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.885C>A
  hgvsp: ENSP00000288828.4:p.Phe295Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.831C>A
  hgvsp: ENSP00000384945.3:p.Phe277Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.885C>A
  hgvsp: ENSP00000385297.3:p.Phe295Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.831C>A
  hgvsp: ENSP00000371821.2:p.Phe277Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1267C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.708C>A
  hgvsp: ENSP00000429654.1:p.Phe236Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1220C>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6287
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7174
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7938
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe295Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

7-5266848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266848
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266848
    reference: chr 7
allele count: 1
allele frequency: 8.281162012653616e-6
allele num: 120756
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.886G>A
  hgvsp: ENSP00000288828.4:p.Gly296Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.832G>A
  hgvsp: ENSP00000371821.2:p.Gly278Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.886G>A
  hgvsp: ENSP00000385297.3:p.Gly296Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.832G>A
  hgvsp: ENSP00000384945.3:p.Gly278Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1221G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.709G>A
  hgvsp: ENSP00000429654.1:p.Gly237Arg
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1268G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6303
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18902
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14157
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3458
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7945
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5233
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Gly296Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-5266853-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266853
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266853
    reference: chr 7
allele count: 12
allele frequency: 9.93821741506965e-5
allele num: 120746
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.891A>G
  hgvsp: ENST00000404704.3:c.891A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.714A>G
  hgvsp: ENST00000484262.1:c.714A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.837A>G
  hgvsp: ENST00000401525.3:c.837A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.891A>G
  hgvsp: ENST00000288828.4:c.891A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1273A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.837A>G
  hgvsp: ENST00000382384.2:c.837A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1226A>G
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3519
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14165
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3636
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys297Lys
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

7-5266855-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266855
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266855
    reference: chr 7
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1275T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.893T>C
  hgvsp: ENSP00000288828.4:p.Val298Ala
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.839T>C
  hgvsp: ENSP00000371821.2:p.Val280Ala
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1228T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.716T>C
  hgvsp: ENSP00000429654.1:p.Val239Ala
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.839T>C
  hgvsp: ENSP00000384945.3:p.Val280Ala
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.893T>C
  hgvsp: ENSP00000385297.3:p.Val298Ala
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11552
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val298Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

7-5266860-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266860
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266860
    reference: chr 7
allele count: 1
allele frequency: 8.284180528862085e-6
allele num: 120712
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.898A>G
  hgvsp: ENSP00000288828.4:p.Met300Val
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1280A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.844A>G
  hgvsp: ENSP00000371821.2:p.Met282Val
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1233A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.898A>G
  hgvsp: ENSP00000385297.3:p.Met300Val
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.844A>G
  hgvsp: ENSP00000384945.3:p.Met282Val
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.721A>G
  hgvsp: ENSP00000429654.1:p.Met241Val
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5301
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3520
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11556
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14159
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18847
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met300Val
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-5266883-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266883
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266883
    reference: chr 7
allele count: 1
allele frequency: 8.296964970213896e-6
allele num: 120526
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.744T>C
  hgvsp: ENST00000484262.1:c.744T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1303T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.867T>C
  hgvsp: ENST00000401525.3:c.867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.921T>C
  hgvsp: ENST00000404704.3:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1256T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.921T>C
  hgvsp: ENST00000288828.4:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.867T>C
  hgvsp: ENST00000382384.2:c.867T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5300
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11546
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3625
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro307Pro
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: MQ

7-5266901-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266901
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266901
    reference: chr 7
allele count: 1
allele frequency: 8.321959988016378e-6
allele num: 120164
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.939G>A
  hgvsp: ENSP00000288828.4:p.Met313Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.762G>A
  hgvsp: ENSP00000429654.1:p.Met254Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1274G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.885G>A
  hgvsp: ENSP00000371821.2:p.Met295Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1321G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.885G>A
  hgvsp: ENSP00000384945.3:p.Met295Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.939G>A
  hgvsp: ENSP00000385297.3:p.Met313Ile
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2414
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10194
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7183
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14117
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met313Ile
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-5266906-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266906
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266906
    reference: chr 7
allele count: 11
allele frequency: 9.156137108991326e-5
allele num: 120138
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.767A>G
  hgvsp: ENSP00000429654.1:p.Asn256Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.944A>G
  hgvsp: ENSP00000385297.3:p.Asn315Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1279A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.890A>G
  hgvsp: ENSP00000371821.2:p.Asn297Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1326A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.890A>G
  hgvsp: ENSP00000384945.3:p.Asn297Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.944A>G
  hgvsp: ENSP00000288828.4:p.Asn315Ser
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7161
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3525
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11472
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5175
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14140
  bin: 9.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7788
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn315Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-5266926-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266926
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266926
    reference: chr 7
allele count: 3
allele frequency: 2.525337553452978e-5
allele num: 118796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1299A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.964A>C
  hgvsp: ENSP00000288828.4:p.Thr322Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1346A>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.787A>C
  hgvsp: ENSP00000429654.1:p.Thr263Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.910A>C
  hgvsp: ENSP00000384945.3:p.Thr304Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.964A>C
  hgvsp: ENSP00000385297.3:p.Thr322Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.910A>C
  hgvsp: ENSP00000371821.2:p.Thr304Pro
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10404
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8624
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6591
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13976
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4188
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr322Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

7-5266928-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266928
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266928
    reference: chr 7
allele count: 35
allele frequency: 2.937473772555602e-4
allele num: 119150
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.912G>A
  hgvsp: ENST00000382384.2:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.912G>A
  hgvsp: ENST00000401525.3:c.912G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.789G>A
  hgvsp: ENST00000484262.1:c.789G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.966G>A
  hgvsp: ENST00000404704.3:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1348G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1301G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.966G>A
  hgvsp: ENST00000288828.4:c.966G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8423
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6678
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10744
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10226
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14234
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14139
  bin: 9.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4868
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr322Thr
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-5266930-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266930
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266930
    reference: chr 7
allele count: 3
allele frequency: 2.658490331956826e-5
allele num: 112846
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.914T>C
  hgvsp: ENSP00000371821.2:p.Val305Ala
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.914T>C
  hgvsp: ENSP00000384945.3:p.Val305Ala
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.791T>C
  hgvsp: ENSP00000429654.1:p.Val264Ala
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1303T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1350T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.968T>C
  hgvsp: ENSP00000288828.4:p.Val323Ala
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.968T>C
  hgvsp: ENSP00000385297.3:p.Val323Ala
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6683
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2938
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2621
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4492
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val323Ala
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

7-5266932-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266932
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266931
    reference: chr 7
allele count: 1
allele frequency: 8.344737808338063e-6
allele num: 119836
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.917delG
  hgvsp: ENSP00000371821.2:p.Arg306ProfsTer13
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1306delG
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.794delG
  hgvsp: ENSP00000429654.1:p.Arg265ProfsTer13
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.971delG
  hgvsp: ENSP00000288828.4:p.Arg324ProfsTer13
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.971delG
  hgvsp: ENSP00000385297.3:p.Arg324ProfsTer13
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1353delG
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.917delG
  hgvsp: ENSP00000384945.3:p.Arg306ProfsTer13
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 1086
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9294
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13115
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4831
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6550
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg324ProfsTer13
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: CG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

7-5266933-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266933
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266933
    reference: chr 7
allele count: 361
allele frequency: 8.120754037881855e-3
allele num: 44454
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.971G>C
  hgvsp: ENSP00000288828.4:p.Arg324Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.917G>C
  hgvsp: ENSP00000384945.3:p.Arg306Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.917G>C
  hgvsp: ENSP00000371821.2:p.Arg306Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.971G>C
  hgvsp: ENSP00000385297.3:p.Arg324Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1353G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.794G>C
  hgvsp: ENSP00000429654.1:p.Arg265Pro
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1306G>C
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 4.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 5.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 6.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 5.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 4.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 5.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 6.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 3.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 904
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 7.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 35003
  bin: 2.5e0
  variant carriers: 7
hgvs: p.Arg324Pro
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

7-5266933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266933
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266933
    reference: chr 7
allele count: 3
allele frequency: 6.748549061951681e-5
allele num: 44454
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.971G>A
  hgvsp: ENSP00000288828.4:p.Arg324His
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1353G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.917G>A
  hgvsp: ENSP00000384945.3:p.Arg306His
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.917G>A
  hgvsp: ENSP00000371821.2:p.Arg306His
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1306G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.794G>A
  hgvsp: ENSP00000429654.1:p.Arg265His
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.971G>A
  hgvsp: ENSP00000385297.3:p.Arg324His
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: VQSRTrancheINDEL99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1946
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 843
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg324His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

7-5266946-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266946
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266946
    reference: chr 7
allele count: 3
allele frequency: 2.50505185457339e-5
allele num: 119758
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.984C>T
  hgvsp: ENST00000288828.4:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1366C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.984C>T
  hgvsp: ENST00000404704.3:c.984C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.930C>T
  hgvsp: ENST00000401525.3:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.930C>T
  hgvsp: ENST00000382384.2:c.930C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.807C>T
  hgvsp: ENST00000484262.1:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1319C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9815
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Cys328Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD

7-5266947-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266947
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266947
    reference: chr 7
allele count: 2
allele frequency: 1.669923016548937e-5
allele num: 119766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.808G>A
  hgvsp: ENSP00000429654.1:p.Gly270Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1320G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.985G>A
  hgvsp: ENSP00000288828.4:p.Gly329Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.931G>A
  hgvsp: ENSP00000371821.2:p.Gly311Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1367G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.931G>A
  hgvsp: ENSP00000384945.3:p.Gly311Ser
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.985G>A
  hgvsp: ENSP00000385297.3:p.Gly329Ser
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15402
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33775
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly329Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

7-5266953-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266953
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266953
    reference: chr 7
allele count: 1
allele frequency: 8.360784576024614e-6
allele num: 119606
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.991A>G
  hgvsp: ENSP00000288828.4:p.Lys331Glu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1373A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.937A>G
  hgvsp: ENSP00000371821.2:p.Lys313Glu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1326A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.991A>G
  hgvsp: ENSP00000385297.3:p.Lys331Glu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.814A>G
  hgvsp: ENSP00000429654.1:p.Lys272Glu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.937A>G
  hgvsp: ENSP00000384945.3:p.Lys313Glu
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2448
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys331Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/7-5266958-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266958
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266958
    reference: chr 7
allele count: 1
allele frequency: 8.372404554588077e-6
allele num: 119440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.942C>A
  hgvsp: ENSP00000384945.3:p.Asn314Lys
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1331C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.996C>A
  hgvsp: ENSP00000288828.4:p.Asn332Lys
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.942C>A
  hgvsp: ENSP00000371821.2:p.Asn314Lys
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.819C>A
  hgvsp: ENSP00000429654.1:p.Asn273Lys
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.996C>A
  hgvsp: ENSP00000385297.3:p.Asn332Lys
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1378C>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3752
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3796
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asn332Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-5266958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266958
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266958
    reference: chr 7
allele count: 975
allele frequency: 8.163094440723375e-3
allele num: 119440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.942C>T
  hgvsp: ENST00000401525.3:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.996C>T
  hgvsp: ENST00000288828.4:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.996C>T
  hgvsp: ENST00000404704.3:c.996C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1378C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.819C>T
  hgvsp: ENST00000484262.1:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.942C>T
  hgvsp: ENST00000382384.2:c.942C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1331C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 9.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 8106
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 26588
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15349
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 4.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 3.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 1253
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3752
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn332Asn
num of homozygotes: 36
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

7-5266961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266961
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266961
    reference: chr 7
allele count: 1
allele frequency: 8.383916294979712e-6
allele num: 119276
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.999C>T
  hgvsp: ENST00000288828.4:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.999C>T
  hgvsp: ENST00000404704.3:c.999C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1381C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1334C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.822C>T
  hgvsp: ENST00000484262.1:c.822C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.945C>T
  hgvsp: ENST00000401525.3:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.945C>T
  hgvsp: ENST00000382384.2:c.945C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26940
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15500
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9881
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile333Ile
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

7-5266967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266967
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266967
    reference: chr 7
allele count: 2
allele frequency: 1.680926526701518e-5
allele num: 118982
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.951G>A
  hgvsp: ENST00000382384.2:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1387G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.951G>A
  hgvsp: ENST00000401525.3:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.828G>A
  hgvsp: ENST00000484262.1:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1340G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1005G>A
  hgvsp: ENST00000404704.3:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1005G>A
  hgvsp: ENST00000288828.4:c.1005G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9795
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33565
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3748
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser335Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

7-5266975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266975
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266975
    reference: chr 7
allele count: 7
allele frequency: 5.907172995780591e-5
allele num: 118500
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013C>T
  hgvsp: ENSP00000288828.4:p.Thr338Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959C>T
  hgvsp: ENSP00000384945.3:p.Thr320Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013C>T
  hgvsp: ENSP00000385297.3:p.Thr338Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959C>T
  hgvsp: ENSP00000371821.2:p.Thr320Ile
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836C>T
  hgvsp: ENSP00000429654.1:p.Thr279Ile
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15195
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26451
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33116
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr338Ile
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-5266976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266976
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266976
    reference: chr 7
allele count: 1
allele frequency: 8.449942540390725e-6
allele num: 118344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+1G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+1G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+1G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+1G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+1G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+1G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+1G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3683
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9646
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1013+1G>A
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

7-5266982-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266982
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266982
    reference: chr 7
allele count: 4
allele frequency: 3.402344215164248e-5
allele num: 117566
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+7A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+7A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+7A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+7A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+7A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+7A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+7A>G
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25373
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14524
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 9.75e1
  variant carriers: 3
hgvs: c.1013+7A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD

7-5266984-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266984
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266984
    reference: chr 7
allele count: 2
allele frequency: 1.702446415499072e-5
allele num: 117478
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+9A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+9A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+9A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+9A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+9A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+9A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+9A>G
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25162
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14371
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7684
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3075
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

7-5266988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266988
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266988
    reference: chr 7
allele count: 8
allele frequency: 6.847204628710329e-5
allele num: 116836
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+13G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+13G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+13G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+13G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+13G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+13G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+13G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13402
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24380
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7776
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4219
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3670
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2912
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29390
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2832
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

7-5266990-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266990
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266990
    reference: chr 7
allele count: 5
allele frequency: 4.291182478243705e-5
allele num: 116518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+15C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3965
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3518
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28282
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2821
  bin: 9.75e1
  variant carriers: 5
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

7-5266991-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266991
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266991
    reference: chr 7
allele count: 6
allele frequency: 5.147740142077628e-5
allele num: 116556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+16G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+16G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12860
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23871
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 870
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28694
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

7-5266997-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266997
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266997
    reference: chr 7
allele count: 5
allele frequency: 4.316372865553618e-5
allele num: 115838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+22G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+22G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8276
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22486
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11861
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27007
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2795
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 7797
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

7-5266998-TCCCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266998
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266994
    reference: chr 7
allele count: 1
allele frequency: 8.643341169962661e-6
allele num: 115696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+25_1395+28delCCCC
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+25_959+28delCCCC
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+25_1348+28delCCCC
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+25_1013+28delCCCC
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+25_836+28delCCCC
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+25_1013+28delCCCC
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+25_959+28delCCCC
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11729
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26521
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2224
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2318
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: TCCCC
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

7-5266999-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5266999
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5266999
    reference: chr 7
allele count: 1
allele frequency: 8.652614820198665e-6
allele num: 115572
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+24C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+24C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7957
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

7-5267000-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267000
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267000
    reference: chr 7
allele count: 1
allele frequency: 8.66190839165685e-6
allele num: 115448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+25C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+25C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+25C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+25C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+25C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+25C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+25C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21239
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4045
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24922
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2782
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7428
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

7-5267002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267002
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267002
    reference: chr 7
allele count: 1
allele frequency: 8.673177331783726e-6
allele num: 115298
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+27C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+27C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+27C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+27C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+27C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+27C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+27C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7719
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 715
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD

7-5267008-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267008
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267008
    reference: chr 7
allele count: 2
allele frequency: 1.745749100939213e-5
allele num: 114564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+33C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+33C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+33C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+33C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+33C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+33C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+33C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10060
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18838
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2926
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22177
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2064
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

7-5267009-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267009
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267009
    reference: chr 7
allele count: 1
allele frequency: 8.759482139415918e-6
allele num: 114162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+34G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+34G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+34G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+34G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+34G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+34G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+34G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7229
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 808
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2863
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/7-5267014-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267014
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267014
    reference: chr 7
allele count: 2
allele frequency: 1.760191508836161e-5
allele num: 113624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+39C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+39C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+39C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+39C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+39C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+39C>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+39C>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8373
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12354
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1155
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5911
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5334
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

7-5267015-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267015
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267015
    reference: chr 7
allele count: 4
allele frequency: 3.523297806747115e-5
allele num: 113530
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+40C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+40C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+40C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+40C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+40C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+40C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+40C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12688
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8161
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2762
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 5313
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4958
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD

7-5267017-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267017
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267017
    reference: chr 7
allele count: 2
allele frequency: 1.767940172904549e-5
allele num: 113126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+42C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+42C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+42C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+42C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+42C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+42C>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+42C>G
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13126
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

7-5267022-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267022
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267022
    reference: chr 7
allele count: 3
allele frequency: 2.677806341045416e-5
allele num: 112032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+47C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+47C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+47C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+47C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+47C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+47C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+47C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2712
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3369
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

7-5267023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267023
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267023
    reference: chr 7
allele count: 4
allele frequency: 3.586671927118826e-5
allele num: 111524
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1395+48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.836+48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1013+48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1013+48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.959+48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.959+48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1348+48G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13061
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5965
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10158
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8759
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4314
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3000
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3237
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

7-5267686-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267686
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267686
    reference: chr 7
allele count: 5
allele frequency: 4.283902806813119e-5
allele num: 116716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-49C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-49C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-49C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-49C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-49C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-49C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-49C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12441
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17782
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14916
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1497
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6071
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5093
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3757
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

7-5267687-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267687
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267687
    reference: chr 7
allele count: 1
allele frequency: 8.563110121596164e-6
allele num: 116780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-48G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-48G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15029
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10838
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1334
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2703
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2401
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-5267696-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267696
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267696
    reference: chr 7
allele count: 1
allele frequency: 8.530821859377933e-6
allele num: 117222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-39A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-39A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-39A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-39A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-39A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-39A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-39A>G
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5708
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2086
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

7-5267699-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267699
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267699
    reference: chr 7
allele count: 1
allele frequency: 8.523695874531197e-6
allele num: 117320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-36G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-36G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-36G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-36G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-36G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-36G>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-36G>C
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28373
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6449
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39085
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2026
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-5267720-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267720
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267720
    reference: chr 7
allele count: 1
allele frequency: 8.423038695439767e-6
allele num: 118722
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-15C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-15C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32034
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44376
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

7-5267724-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267724
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267724
    reference: chr 7
allele count: 3150
allele frequency: 2.646569541765388e-2
allele num: 119022
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-11A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-11A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-11A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-11A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-11A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-11A>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-11A>G
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 433
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17895
  bin: 2.75e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 1.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.25e1
  variant carriers: 347
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 30909
  bin: 2.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 279
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 408
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6505
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 4
num of homozygotes: 51
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-5267724-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267724
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267724
    reference: chr 7
allele count: 1
allele frequency: 8.40180806909647e-6
allele num: 119022
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-11A>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-11A>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-11A>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-11A>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-11A>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-11A>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-11A>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6505
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1185
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43640
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

7-5267725-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267725
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267725
    reference: chr 7
allele count: 1
allele frequency: 8.396869646995599e-6
allele num: 119092
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-10T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-10T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-10T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-10T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-10T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-10T>C
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-10T>C
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5372
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44843
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

7-5267726-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267726
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267726
    reference: chr 7
allele count: 23
allele frequency: 1.930372310068151e-4
allele num: 119148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-9T>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-9T>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-9T>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-9T>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-9T>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-9T>G
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-9T>G
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18582
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31176
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5370
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44943
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1096
  bin: 9.75e1
  variant carriers: 23
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-5267730-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267730
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267730
    reference: chr 7
allele count: 3
allele frequency: 2.514415984980555e-5
allele num: 119312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-5C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-5C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-5C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-5C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-5C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-5C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-5C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18787
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45194
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1014-5C>T
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

7-5267731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267731
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267731
    reference: chr 7
allele count: 1
allele frequency: 8.379560575843403e-6
allele num: 119338
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1014-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.837-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.960-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1349-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.960-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1014-4C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1396-4C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31218
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18832
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 751
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1014-4C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

7-5267749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267749
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267749
    reference: chr 7
allele count: 1
allele frequency: 8.357430591538938e-6
allele num: 119654
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1028C>T
  hgvsp: ENSP00000288828.4:p.Pro343Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.851C>T
  hgvsp: ENSP00000429654.1:p.Pro284Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1028C>T
  hgvsp: ENSP00000385297.3:p.Pro343Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.974C>T
  hgvsp: ENSP00000371821.2:p.Pro325Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1410C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.974C>T
  hgvsp: ENSP00000384945.3:p.Pro325Leu
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1363C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro343Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP

7-5267750-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267750
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267750
    reference: chr 7
allele count: 6
allele frequency: 5.01370412460726e-5
allele num: 119672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1029G>A
  hgvsp: ENST00000404704.3:c.1029G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.852G>A
  hgvsp: ENST00000484262.1:c.852G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.975G>A
  hgvsp: ENST00000382384.2:c.975G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1364G>A
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.975G>A
  hgvsp: ENST00000401525.3:c.975G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1029G>A
  hgvsp: ENST00000288828.4:c.1029G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1411G>A
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1650
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro343Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

7-5267751-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 5267751
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 5267751
    reference: chr 7
allele count: 2
allele frequency: 1.671290570578601e-5
allele num: 119668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000466014
  gene symbol: WIPI2
  hgvsc: ENST00000466014.1:n.1365C>T
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000385297
  ensembl transcript: ENST00000404704
  gene symbol: WIPI2
  hgvsc: ENST00000404704.3:c.1030C>T
  hgvsp: ENSP00000385297.3:p.Arg344Trp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000371821
  ensembl transcript: ENST00000382384
  gene symbol: WIPI2
  hgvsc: ENST00000382384.2:c.976C>T
  hgvsp: ENSP00000371821.2:p.Arg326Trp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000384945
  ensembl transcript: ENST00000401525
  gene symbol: WIPI2
  hgvsc: ENST00000401525.3:c.976C>T
  hgvsp: ENSP00000384945.3:p.Arg326Trp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000288828
  ensembl transcript: ENST00000288828
  gene symbol: WIPI2
  hgvsc: ENST00000288828.4:c.1030C>T
  hgvsp: ENSP00000288828.4:p.Arg344Trp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000157954
  ensembl protein: ENSP00000429654
  ensembl transcript: ENST00000484262
  gene symbol: WIPI2
  hgvsc: ENST00000484262.1:c.853C>T
  hgvsp: ENSP00000429654.1:p.Arg285Trp
  variant of: http://identifiers.org/hgnc/32225
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000157954
  ensembl transcript: ENST00000471851
  gene symbol: WIPI2
  hgvsc: ENST00000471851.1:n.1412C>T
  variant of: http://identifiers.org/hgnc/32225
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg344Trp
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 910
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7323
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5062
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14181
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3482
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528304193666707e-5
allele num: 65432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.397e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.44e-1

QD
type: SiteQuality
SIO_000300: 1.544e1

MQRankSum
type: SiteQuality
SIO_000300: -2.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

DP
type: SiteQuality
SIO_000300: 2.229455e6

MQ
type: SiteQuality
SIO_000300: 5.97e1

GenotypeQuality
all individuals: 1011
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5034
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7354
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14163
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16052
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65438
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.861e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.298e0

DP
type: SiteQuality
SIO_000300: 2.232478e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 6.73e-1

QD
type: SiteQuality
SIO_000300: 1.161e1

VQSLOD
type: SiteQuality
SIO_000300: -9.665e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.18e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14164
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 7348
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.222232407492285e-4
allele num: 65454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.852216748768474e-5
allele num: 10150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16070
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

FS
type: SiteQuality
SIO_000300: 1.193e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 2.233378e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

QD
type: SiteQuality
SIO_000300: 1.038e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.294e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527790509365356e-5
allele num: 65454
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16070
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.294e0

FS
type: SiteQuality
SIO_000300: 1.193e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 2.233378e6

QD
type: SiteQuality
SIO_000300: 1.038e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
all individuals: 3474
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 319
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527837193668643e-5
allele num: 65452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-2

FS
type: SiteQuality
SIO_000300: 6.885e0

VQSLOD
type: SiteQuality
SIO_000300: -1.76e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.413e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.758e1

DP
type: SiteQuality
SIO_000300: 2.233377e6

GenotypeQuality
all individuals: 2190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 3430
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4294
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variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.052782611350246e-5
allele num: 65514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16122
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.26e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.229e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.893e0

FS
type: SiteQuality
SIO_000300: 1.159e0

MQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

DP
type: SiteQuality
SIO_000300: 2.239316e6

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4330
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17512
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GenotypeQuality
all individuals: 76
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.747e0

QD
type: SiteQuality
SIO_000300: 1.173e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 7.17e-1

DP
type: SiteQuality
SIO_000300: 2.259005e6

VQSLOD
type: SiteQuality
SIO_000300: -2.138e0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e0

MQ
type: SiteQuality
SIO_000300: 5.873e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-3

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65762
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.911597887737141e-4
allele num: 10226
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.36e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.15e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.262552e6

QD
type: SiteQuality
SIO_000300: 1.348e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65904
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.750390015600624e-5
allele num: 10256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.86e-2

MQ
type: SiteQuality
SIO_000300: 5.888e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.945e0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.831e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 2.270424e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.447e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.516346212167162e-5
allele num: 65948
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.11e-1

VQSLOD
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.167e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.756e0

MQ
type: SiteQuality
SIO_000300: 5.946e1

DP
type: SiteQuality
SIO_000300: 2.272869e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 7790
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.032508491023775e-5
allele num: 65952
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8584
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.273602e6

VQSLOD
type: SiteQuality
SIO_000300: 4.57e-1

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.892e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66022
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.146e0

MQRankSum
type: SiteQuality
SIO_000300: -3.38e-1

DP
type: SiteQuality
SIO_000300: 2.276479e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.872e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66032
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.746588693957115e-5
allele num: 10260
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

DP
type: SiteQuality
SIO_000300: 2.27717e6

MQRankSum
type: SiteQuality
SIO_000300: -1.873e0

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.006e0

QD
type: SiteQuality
SIO_000300: 9.31e0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66116
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.063545961678389e-5
allele num: 16492
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.062e0

FS
type: SiteQuality
SIO_000300: 5.473e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.879e1

VQSLOD
type: SiteQuality
SIO_000300: -8.174e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-1

DP
type: SiteQuality
SIO_000300: 2.280281e6

QD
type: SiteQuality
SIO_000300: 1.356e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.714396735962697e-5
allele num: 10294
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.510710940568632e-4
allele num: 66194
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.758e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.05e-1

DP
type: SiteQuality
SIO_000300: 2.283042e6

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.545e0

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.119e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020053152935492e-5
allele num: 66224
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.818402230573403e-4
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
SIO_000300: 1.8866e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-2

QD
type: SiteQuality
SIO_000300: 1.237e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.739e0

DP
type: SiteQuality
SIO_000300: 2.284407e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.732201628269531e-4
allele num: 11546
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQ
type: SiteQuality
SIO_000300: 5.9e1

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.744e0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.284836e6

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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African
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MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.47e-1

ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10320
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 2.322880371660859e-4
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66252
num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.279999999999999e0

ClippingRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.041e1

BaseQRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66266
num of homozygotes: 0

African
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Other
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East Asian
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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MQRankSum
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FS
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QD
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66264
num of homozygotes: 0

South Asian
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allele frequency: 6.666666666666666e-4
allele num: 16500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.146e0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.385e1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.91e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66258
num of homozygotes: 0

South Asian
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allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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QD
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FS
type: SiteQuality
SIO_000300: 6.874e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.049e0

DP
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.664009703690868e-5
allele num: 11542
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66240
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.946e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.19e-2

FS
type: SiteQuality
SIO_000300: 4.884e0

DP
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SIO_000300: 2.285264e6

VQSLOD
type: SiteQuality
SIO_000300: 6.1e-1

QD
type: SiteQuality
SIO_000300: 1.55e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66116
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.66e0

VQSLOD
type: SiteQuality
SIO_000300: -8.977000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 7.163e0

DP
type: SiteQuality
SIO_000300: 2.280969e6

QD
type: SiteQuality
SIO_000300: 1.755e1

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.765625000000001e-5
allele num: 10240
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65932
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.957e1

MQ
type: SiteQuality
SIO_000300: 5.935e1

VQSLOD
type: SiteQuality
SIO_000300: -1.208e0

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.778e0

FS
type: SiteQuality
SIO_000300: 8.91e-1

DP
type: SiteQuality
SIO_000300: 2.274244e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.406e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.36599581094618e-4
allele num: 65886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.788566953797964e-5
allele num: 10216
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.269675e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.29e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 1.346e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.589682393978337e-5
allele num: 65364
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6094
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.218308e6

MQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.67e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 25
allele frequency: 2.937720329024677e-3
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 10
allele frequency: 1.532097441397273e-4
allele num: 65270
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11446
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6580
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South Asian
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African
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allele count: 0
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allele num: 10032
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.938e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.87e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 1
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allele num: 9260
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 2.188183807439825e-4
allele num: 4570
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Latino
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East Asian
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.604827320580306e-5
allele num: 62312
num of homozygotes: 0

South Asian
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DP
type: SiteQuality
SIO_000300: 2.22755e6

VQSLOD
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BaseQRankSum
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 5.923e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 0
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allele num: 11484
num of homozygotes: 0

East Asian
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South Asian
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allele num: 16440
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African
type: Population
allele count: 1
allele frequency: 9.869719699960521e-5
allele num: 10132
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 886
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65736
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 9.5505e1

MQ
type: SiteQuality
SIO_000300: 5.897e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

QD
type: SiteQuality
SIO_000300: 1.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

DP
type: SiteQuality
SIO_000300: 2.359401e6

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.534000000000001e0

GenotypeQuality
all individuals: 1261
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 561
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 748
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 705
bin: 4.25e1
variant carriers: 12

GenotypeQuality
all individuals: 865
bin: 2.75e1
variant carriers: 16

GenotypeQuality
all individuals: 990
bin: 8.25e1
variant carriers: 10

GenotypeQuality
all individuals: 452
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 634
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 7542
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1008
bin: 7.25e1
variant carriers: 13

GenotypeQuality
all individuals: 1745
bin: 9.75e1
variant carriers: 184

African
type: Population
allele count: 45
allele frequency: 2.393617021276596e-2
allele num: 1880
num of homozygotes: 0

South Asian
type: Population
allele count: 38
allele frequency: 4.249608588682621e-3
allele num: 8942
num of homozygotes: 0

East Asian
type: Population
allele count: 43
allele frequency: 2.221074380165289e-2
allele num: 1936
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.26797385620915e-3
allele num: 306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 162
allele frequency: 5.637920233869284e-3
allele num: 28734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 26
allele frequency: 3.746397694524495e-2
allele num: 694
num of homozygotes: 0

Latino
type: Population
allele count: 46
allele frequency: 2.344546381243629e-2
allele num: 1962
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.86763e2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.094e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.564e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e0

QD
type: SiteQuality
SIO_000300: 1.72e0

VQSLOD
type: SiteQuality
SIO_000300: -3.303e1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.191e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

DP
type: SiteQuality
SIO_000300: 2.578335e6

GenotypeQuality
all individuals: 880
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7542
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35003
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 769
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.044059302568386e-4
allele num: 28734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8942
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1936
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.564e0

FS
type: SiteQuality
SIO_000300: 1.86763e2

QD
type: SiteQuality
SIO_000300: 1.72e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e0

DP
type: SiteQuality
SIO_000300: 2.578335e6

VQSLOD
type: SiteQuality
SIO_000300: -3.303e1

MQ
type: SiteQuality
SIO_000300: 5.903e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.191e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.094e-1

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2454
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3246
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3598
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65706
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.861932938856015e-5
allele num: 10140
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167406023815083e-4
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.730574471800244e-5
allele num: 11454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.895e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.021e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.217e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.51e-1

DP
type: SiteQuality
SIO_000300: 1.785525e6

FS
type: SiteQuality
SIO_000300: 1.2862e1

QD
type: SiteQuality
SIO_000300: 1.171e1

GenotypeQuality
all individuals: 1299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3245
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3805
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 966
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9830
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16767865483419e-4
allele num: 8564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521699433927811e-5
allele num: 65716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

QD
type: SiteQuality
SIO_000300: 1.109e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.777e0

VQSLOD
type: SiteQuality
SIO_000300: 3.39e-1

DP
type: SiteQuality
SIO_000300: 1.784917e6

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 3.797e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 961
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3226
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3570
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9802
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523879186858066e-5
allele num: 65622
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.312e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

DP
type: SiteQuality
SIO_000300: 1.781885e6

VQSLOD
type: SiteQuality
SIO_000300: -5.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.888e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

QD
type: SiteQuality
SIO_000300: 7.64e0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3197
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33368
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526437904506045e-5
allele num: 65512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.981e0

DP
type: SiteQuality
SIO_000300: 1.778167e6

QD
type: SiteQuality
SIO_000300: 1.229e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

MQ
type: SiteQuality
SIO_000300: 5.896e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 9754
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 33368
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1379
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 9.75e1
variant carriers: 931

Other
type: Population
allele count: 4
allele frequency: 4.494382022471911e-3
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.508771929824561e-4
allele num: 8550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 3.816094761265112e-4
allele num: 65512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.097560975609756e-5
allele num: 16400
num of homozygotes: 0

Latino
type: Population
allele count: 51
allele frequency: 4.458041958041958e-3
allele num: 11440
num of homozygotes: 0

African
type: Population
allele count: 891
allele frequency: 8.823529411764706e-2
allele num: 10098
num of homozygotes: 36

MQRankSum
type: SiteQuality
SIO_000300: 1.77e-1

FS
type: SiteQuality
SIO_000300: 6.06e-1

QD
type: SiteQuality
SIO_000300: 1.229e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.981e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.14e-1

DP
type: SiteQuality
SIO_000300: 1.778167e6

MQ
type: SiteQuality
SIO_000300: 5.896e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 33834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527977263698316e-5
allele num: 65446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10032
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.355e0

DP
type: SiteQuality
SIO_000300: 1.745547e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.416e1

GenotypeQuality
all individuals: 951
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.064852274120387e-5
allele num: 65256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.952e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e0

DP
type: SiteQuality
SIO_000300: 1.738506e6

QD
type: SiteQuality
SIO_000300: 9.91e0

FS
type: SiteQuality
SIO_000300: 7.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2032
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2863
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3693
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3129
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9934
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 3.687768899815612e-4
allele num: 16270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538272212650751e-5
allele num: 65008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.724893e6

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 2.259e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

MQRankSum
type: SiteQuality
SIO_000300: 2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

QD
type: SiteQuality
SIO_000300: 1.522e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 32928
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3126
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2387
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.54054720236628e-5
allele num: 64912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

FS
type: SiteQuality
SIO_000300: 5.701e0

VQSLOD
type: SiteQuality
SIO_000300: 7.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.099e1

DP
type: SiteQuality
SIO_000300: 1.720513e6

GenotypeQuality
all individuals: 777
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2822
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 5.75e1
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GenotypeQuality
all individuals: 3082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3657
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.20289675278355e-5
allele num: 64486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16088
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

FS
type: SiteQuality
SIO_000300: 2.489e0

DP
type: SiteQuality
SIO_000300: 1.688133e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.308e1

GenotypeQuality
all individuals: 350
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2992
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30939
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.102218085931441e-5
allele num: 64470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

MQ
type: SiteQuality
SIO_000300: 5.93e1

MQRankSum
type: SiteQuality
SIO_000300: 5.56e-1

FS
type: SiteQuality
SIO_000300: 3.827e0

DP
type: SiteQuality
SIO_000300: 1.680994e6

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

QD
type: SiteQuality
SIO_000300: 1.014e1

GenotypeQuality
all individuals: 267
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.275100401606425e-5
allele num: 15936
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.026483268322726e-4
allele num: 9742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.357454772301933e-5
allele num: 64120
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.32e-1

DP
type: SiteQuality
SIO_000300: 1.643319e6

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.627e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 1.198e1

GenotypeQuality
all individuals: 1576
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2880
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.571428571428571e-4
allele num: 8400
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029866117404737e-4
allele num: 9710
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563379400913014e-5
allele num: 63964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 3.224e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

MQRankSum
type: SiteQuality
SIO_000300: -2.46e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.625377e6

GenotypeQuality
all individuals: 4017
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2815
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2861
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15874
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.145091582630171e-4
allele num: 9718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63970
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.164e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.35e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.622544e6

MQRankSum
type: SiteQuality
SIO_000300: 2.32e-1

FS
type: SiteQuality
SIO_000300: 2.491e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

GenotypeQuality
all individuals: 3389
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 907
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.039284971939306e-4
allele num: 9622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.7166844852525e-5
allele num: 63604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.348400203148806e-5
allele num: 15752
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.58099e6

QD
type: SiteQuality
SIO_000300: 1.071e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.649999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.187e0

GenotypeQuality
all individuals: 311
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7677
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2782
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2683
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.573811772112056e-5
allele num: 63540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.572933e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.84e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

GenotypeQuality
all individuals: 427
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3299
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
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GenotypeQuality
all individuals: 4950
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2783
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7530
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.043405676126878e-4
allele num: 9584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

DP
type: SiteQuality
SIO_000300: 1.557059e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.08e0

QD
type: SiteQuality
SIO_000300: 1.195e1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 2.324e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.728e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63372
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.376737661012626e-5
allele num: 15682
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.549686e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 7.76e0

VQSLOD
type: SiteQuality
SIO_000300: -6.603e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579579200101093e-5
allele num: 63308
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15654
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

FS
type: SiteQuality
SIO_000300: 1.7896e1

MQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.67e-1

DP
type: SiteQuality
SIO_000300: 1.532731e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.338e0

QD
type: SiteQuality
SIO_000300: 1.018e1

VQSLOD
type: SiteQuality
SIO_000300: -2.463e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.176922832544397e-5
allele num: 62954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9492
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.69e-1

FS
type: SiteQuality
SIO_000300: 9.429e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 1.486404e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.748e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e-1

QD
type: SiteQuality
SIO_000300: 2.637e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1308
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593523918794021e-5
allele num: 62754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6302
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.996e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

DP
type: SiteQuality
SIO_000300: 1.461877e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.598e0

VQSLOD
type: SiteQuality
SIO_000300: 5.15e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.67e-1

QD
type: SiteQuality
SIO_000300: 1.062e1

GenotypeQuality
all individuals: 2940
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 509
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.43427458617332e-4
allele num: 8216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.614e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

QD
type: SiteQuality
SIO_000300: 1.377e1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

DP
type: SiteQuality
SIO_000300: 1.40239e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2716
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variant carriers: 4

GenotypeQuality
all individuals: 2763
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62458
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.272591326639607e-4
allele num: 9362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15254
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.287e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 1.395609e6

VQSLOD
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.09e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.799208348326736e-4
allele num: 11116
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62290
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9322
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.17e-1

QD
type: SiteQuality
SIO_000300: 1.688e1

VQSLOD
type: SiteQuality
SIO_000300: 1.99e-1

FS
type: SiteQuality
SIO_000300: 3.365e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

DP
type: SiteQuality
SIO_000300: 1.378388e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.218e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.017132551848512e-5
allele num: 11090
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.34390538906061e-4
allele num: 14882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

DP
type: SiteQuality
SIO_000300: 1.344002e6

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.515719172503666e-5
allele num: 61390
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.335208e6

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.95e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1372
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563819472680074e-5
allele num: 63946
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.164468006411046e-5
allele num: 16222
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.92379082634303e-5
allele num: 11206
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.02757502027575e-4
allele num: 9864
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.73e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-2

QD
type: SiteQuality
SIO_000300: 1.202e1

FS
type: SiteQuality
SIO_000300: 2.169e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

DP
type: SiteQuality
SIO_000300: 1.363056e6

GenotypeQuality
all individuals: 3433
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6160
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27660
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4731
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.926977325477593e-5
allele num: 11202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63990
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

FS
type: SiteQuality
SIO_000300: 3.174e0

QD
type: SiteQuality
SIO_000300: 1.443e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 5.827e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.189e0

DP
type: SiteQuality
SIO_000300: 1.370722e6

VQSLOD
type: SiteQuality
SIO_000300: -1.991e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6340
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557050323866467e-5
allele num: 64224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6290
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.713e0

MQRankSum
type: SiteQuality
SIO_000300: -1.179e0

MQ
type: SiteQuality
SIO_000300: 5.807e1

DP
type: SiteQuality
SIO_000300: 1.417835e6

QD
type: SiteQuality
SIO_000300: 1.519e1

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
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GenotypeQuality
all individuals: 1480
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2001
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9920
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6296
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.877840909090909e-5
allele num: 11264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

QD
type: SiteQuality
SIO_000300: 1.854e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.034e0

VQSLOD
type: SiteQuality
SIO_000300: 5.39e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.437746e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

GenotypeQuality
all individuals: 6832
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 486
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variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1602
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65032
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.776549060909251e-5
allele num: 11394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.6e-3

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 2.445e0

QD
type: SiteQuality
SIO_000300: 8.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: 5.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

DP
type: SiteQuality
SIO_000300: 1.503232e6

GenotypeQuality
all individuals: 3605
bin: 9.75e1
variant carriers: 3067

GenotypeQuality
all individuals: 419
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1185
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 167
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43640
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1408
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 110
bin: 7.5e0
variant carriers: 1

Latino
type: Population
allele count: 196
allele frequency: 1.716888577435179e-2
allele num: 11416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2434
allele frequency: 3.732899822096804e-2
allele num: 65204
num of homozygotes: 48

European (Finnish)
type: Population
allele count: 65
allele frequency: 1.010572139303483e-2
allele num: 6432
num of homozygotes: 0

South Asian
type: Population
allele count: 265
allele frequency: 1.615262708765086e-2
allele num: 16406
num of homozygotes: 3

Other
type: Population
allele count: 24
allele frequency: 2.72108843537415e-2
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 166
allele frequency: 1.643564356435644e-2
allele num: 10100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

DP
type: SiteQuality
SIO_000300: 1.570969e6

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.64e0

QD
type: SiteQuality
SIO_000300: 1.423e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

GenotypeQuality
all individuals: 189
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3605
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 536
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533648242439114e-5
allele num: 65204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

QD
type: SiteQuality
SIO_000300: 1.423e1

FS
type: SiteQuality
SIO_000300: 5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

VQSLOD
type: SiteQuality
SIO_000300: 4.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.14e-1

DP
type: SiteQuality
SIO_000300: 1.570969e6

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1076
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532379171902295e-5
allele num: 65258
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.14e-1

DP
type: SiteQuality
SIO_000300: 1.501441e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.217e0

QD
type: SiteQuality
SIO_000300: 8.08e0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7007
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

African
type: Population
allele count: 23
allele frequency: 2.275425405619311e-3
allele num: 10108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16416
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e0

FS
type: SiteQuality
SIO_000300: 1.225e0

DP
type: SiteQuality
SIO_000300: 1.502841e6

QD
type: SiteQuality
SIO_000300: 1.281e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: -1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.12e-1

GenotypeQuality
all individuals: 405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
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GenotypeQuality
all individuals: 1472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7031
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.588559192413582e-5
allele num: 65380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.68e-1

FS
type: SiteQuality
SIO_000300: 1.732e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.02e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.507276e6

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7034
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45295
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528911720637251e-5
allele num: 65406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 1.508342e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.792e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
all individuals: 153
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524483200195134e-5
allele num: 65596
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-1

FS
type: SiteQuality
SIO_000300: 5.266e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.967e0

VQSLOD
type: SiteQuality
SIO_000300: -2.074e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-1

QD
type: SiteQuality
SIO_000300: 3.081e1

DP
type: SiteQuality
SIO_000300: 1.517993e6

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45874
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.143832484988876e-5
allele num: 65618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.517865e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.37e-1

FS
type: SiteQuality
SIO_000300: 8.6e-1

QD
type: SiteQuality
SIO_000300: 1.054e1

MQ
type: SiteQuality
SIO_000300: 6.0e1