7-107880528-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 107880528
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 107880528
    reference: chr 7
allele count: 1
allele frequency: 8.288575028181154e-6
allele num: 120648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000325269
  ensembl transcript: ENST00000351718
  gene symbol: NRCAM
  hgvsc: ENST00000351718.4:c.-20T>C
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390421
  ensembl transcript: ENST00000417701
  gene symbol: NRCAM
  hgvsc: ENST00000417701.1:c.-20T>C
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390868
  ensembl transcript: ENST00000442580
  gene symbol: NRCAM
  hgvsc: ENST00000442580.1:c.-20T>C
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000407858
  ensembl transcript: ENST00000413765
  gene symbol: NRCAM
  hgvsc: ENST00000413765.2:c.-20T>C
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368314
  ensembl transcript: ENST00000379028
  gene symbol: NRCAM
  hgvsc: ENST00000379028.3:c.-20T>C
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000393663
  ensembl transcript: ENST00000418239
  gene symbol: NRCAM
  hgvsc: ENST00000418239.1:c.-20T>C
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000408203
  ensembl transcript: ENST00000456431
  gene symbol: NRCAM
  hgvsc: ENST00000456431.1:c.-20T>C
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368308
  ensembl transcript: ENST00000379022
  gene symbol: NRCAM
  hgvsc: ENST00000379022.4:c.-20T>C
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368310
  ensembl transcript: ENST00000379024
  gene symbol: NRCAM
  hgvsc: ENST00000379024.4:c.-20T>C
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000397544
  ensembl transcript: ENST00000419936
  gene symbol: NRCAM
  hgvsc: ENST00000419936.1:c.-20T>C
  variant of: http://identifiers.org/hgnc/7994
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4027
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/7-107880532-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 107880532
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 107880531
    reference: chr 7
allele count: 1
allele frequency: 8.295175525914129e-6
allele num: 120552
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000408203
  ensembl transcript: ENST00000456431
  gene symbol: NRCAM
  hgvsc: ENST00000456431.1:c.-25delG
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000393663
  ensembl transcript: ENST00000418239
  gene symbol: NRCAM
  hgvsc: ENST00000418239.1:c.-25delG
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000407858
  ensembl transcript: ENST00000413765
  gene symbol: NRCAM
  hgvsc: ENST00000413765.2:c.-25delG
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368310
  ensembl transcript: ENST00000379024
  gene symbol: NRCAM
  hgvsc: ENST00000379024.4:c.-25delG
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368308
  ensembl transcript: ENST00000379022
  gene symbol: NRCAM
  hgvsc: ENST00000379022.4:c.-25delG
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390421
  ensembl transcript: ENST00000417701
  gene symbol: NRCAM
  hgvsc: ENST00000417701.1:c.-25delG
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000397544
  ensembl transcript: ENST00000419936
  gene symbol: NRCAM
  hgvsc: ENST00000419936.1:c.-25delG
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000325269
  ensembl transcript: ENST00000351718
  gene symbol: NRCAM
  hgvsc: ENST00000351718.4:c.-25delG
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390868
  ensembl transcript: ENST00000442580
  gene symbol: NRCAM
  hgvsc: ENST00000442580.1:c.-25delG
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368314
  ensembl transcript: ENST00000379028
  gene symbol: NRCAM
  hgvsc: ENST00000379028.3:c.-25delG
  variant of: http://identifiers.org/hgnc/7994
canonical: true
consequence: 5' UTR
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 14024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11376
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6912
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16727
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: AC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

7-107880539-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 107880539
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 107880539
    reference: chr 7
allele count: 3
allele frequency: 2.493641214902e-5
allele num: 120306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368310
  ensembl transcript: ENST00000379024
  gene symbol: NRCAM
  hgvsc: ENST00000379024.4:c.-31C>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000407858
  ensembl transcript: ENST00000413765
  gene symbol: NRCAM
  hgvsc: ENST00000413765.2:c.-31C>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390421
  ensembl transcript: ENST00000417701
  gene symbol: NRCAM
  hgvsc: ENST00000417701.1:c.-31C>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390868
  ensembl transcript: ENST00000442580
  gene symbol: NRCAM
  hgvsc: ENST00000442580.1:c.-31C>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000408203
  ensembl transcript: ENST00000456431
  gene symbol: NRCAM
  hgvsc: ENST00000456431.1:c.-31C>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000325269
  ensembl transcript: ENST00000351718
  gene symbol: NRCAM
  hgvsc: ENST00000351718.4:c.-31C>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368308
  ensembl transcript: ENST00000379022
  gene symbol: NRCAM
  hgvsc: ENST00000379022.4:c.-31C>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000393663
  ensembl transcript: ENST00000418239
  gene symbol: NRCAM
  hgvsc: ENST00000418239.1:c.-31C>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000397544
  ensembl transcript: ENST00000419936
  gene symbol: NRCAM
  hgvsc: ENST00000419936.1:c.-31C>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368314
  ensembl transcript: ENST00000379028
  gene symbol: NRCAM
  hgvsc: ENST00000379028.3:c.-31C>A
  variant of: http://identifiers.org/hgnc/7994
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6898
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4015
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-107880540-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 107880540
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 107880540
    reference: chr 7
allele count: 1
allele frequency: 8.31282835672009e-6
allele num: 120296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390868
  ensembl transcript: ENST00000442580
  gene symbol: NRCAM
  hgvsc: ENST00000442580.1:c.-32T>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000325269
  ensembl transcript: ENST00000351718
  gene symbol: NRCAM
  hgvsc: ENST00000351718.4:c.-32T>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368310
  ensembl transcript: ENST00000379024
  gene symbol: NRCAM
  hgvsc: ENST00000379024.4:c.-32T>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368314
  ensembl transcript: ENST00000379028
  gene symbol: NRCAM
  hgvsc: ENST00000379028.3:c.-32T>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000393663
  ensembl transcript: ENST00000418239
  gene symbol: NRCAM
  hgvsc: ENST00000418239.1:c.-32T>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000407858
  ensembl transcript: ENST00000413765
  gene symbol: NRCAM
  hgvsc: ENST00000413765.2:c.-32T>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390421
  ensembl transcript: ENST00000417701
  gene symbol: NRCAM
  hgvsc: ENST00000417701.1:c.-32T>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000397544
  ensembl transcript: ENST00000419936
  gene symbol: NRCAM
  hgvsc: ENST00000419936.1:c.-32T>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368308
  ensembl transcript: ENST00000379022
  gene symbol: NRCAM
  hgvsc: ENST00000379022.4:c.-32T>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000408203
  ensembl transcript: ENST00000456431
  gene symbol: NRCAM
  hgvsc: ENST00000456431.1:c.-32T>G
  variant of: http://identifiers.org/hgnc/7994
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/7-107880546-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 107880546
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 107880546
    reference: chr 7
allele count: 1
allele frequency: 8.339170752860335e-6
allele num: 119916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000325269
  ensembl transcript: ENST00000351718
  gene symbol: NRCAM
  hgvsc: ENST00000351718.4:c.-38G>T
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368310
  ensembl transcript: ENST00000379024
  gene symbol: NRCAM
  hgvsc: ENST00000379024.4:c.-38G>T
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000407858
  ensembl transcript: ENST00000413765
  gene symbol: NRCAM
  hgvsc: ENST00000413765.2:c.-38G>T
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000408203
  ensembl transcript: ENST00000456431
  gene symbol: NRCAM
  hgvsc: ENST00000456431.1:c.-38G>T
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000397544
  ensembl transcript: ENST00000419936
  gene symbol: NRCAM
  hgvsc: ENST00000419936.1:c.-38G>T
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368308
  ensembl transcript: ENST00000379022
  gene symbol: NRCAM
  hgvsc: ENST00000379022.4:c.-38G>T
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000393663
  ensembl transcript: ENST00000418239
  gene symbol: NRCAM
  hgvsc: ENST00000418239.1:c.-38G>T
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368314
  ensembl transcript: ENST00000379028
  gene symbol: NRCAM
  hgvsc: ENST00000379028.3:c.-38G>T
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390421
  ensembl transcript: ENST00000417701
  gene symbol: NRCAM
  hgvsc: ENST00000417701.1:c.-38G>T
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390868
  ensembl transcript: ENST00000442580
  gene symbol: NRCAM
  hgvsc: ENST00000442580.1:c.-38G>T
  variant of: http://identifiers.org/hgnc/7994
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-107880546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 107880546
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 107880546
    reference: chr 7
allele count: 4
allele frequency: 3.335668301144134e-5
allele num: 119916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390421
  ensembl transcript: ENST00000417701
  gene symbol: NRCAM
  hgvsc: ENST00000417701.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000407858
  ensembl transcript: ENST00000413765
  gene symbol: NRCAM
  hgvsc: ENST00000413765.2:c.-38G>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390868
  ensembl transcript: ENST00000442580
  gene symbol: NRCAM
  hgvsc: ENST00000442580.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368310
  ensembl transcript: ENST00000379024
  gene symbol: NRCAM
  hgvsc: ENST00000379024.4:c.-38G>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368314
  ensembl transcript: ENST00000379028
  gene symbol: NRCAM
  hgvsc: ENST00000379028.3:c.-38G>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368308
  ensembl transcript: ENST00000379022
  gene symbol: NRCAM
  hgvsc: ENST00000379022.4:c.-38G>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000393663
  ensembl transcript: ENST00000418239
  gene symbol: NRCAM
  hgvsc: ENST00000418239.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000408203
  ensembl transcript: ENST00000456431
  gene symbol: NRCAM
  hgvsc: ENST00000456431.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000397544
  ensembl transcript: ENST00000419936
  gene symbol: NRCAM
  hgvsc: ENST00000419936.1:c.-38G>A
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000325269
  ensembl transcript: ENST00000351718
  gene symbol: NRCAM
  hgvsc: ENST00000351718.4:c.-38G>A
  variant of: http://identifiers.org/hgnc/7994
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1537
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

7-107880546-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 107880546
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 107880545
    reference: chr 7
allele count: 2
allele frequency: 1.667834150572067e-5
allele num: 119916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000408203
  ensembl transcript: ENST00000456431
  gene symbol: NRCAM
  hgvsc: ENST00000456431.1:c.-39delA
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390421
  ensembl transcript: ENST00000417701
  gene symbol: NRCAM
  hgvsc: ENST00000417701.1:c.-39delA
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390868
  ensembl transcript: ENST00000442580
  gene symbol: NRCAM
  hgvsc: ENST00000442580.1:c.-39delA
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000325269
  ensembl transcript: ENST00000351718
  gene symbol: NRCAM
  hgvsc: ENST00000351718.4:c.-39delA
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000393663
  ensembl transcript: ENST00000418239
  gene symbol: NRCAM
  hgvsc: ENST00000418239.1:c.-39delA
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000407858
  ensembl transcript: ENST00000413765
  gene symbol: NRCAM
  hgvsc: ENST00000413765.2:c.-39delA
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368310
  ensembl transcript: ENST00000379024
  gene symbol: NRCAM
  hgvsc: ENST00000379024.4:c.-39delA
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368308
  ensembl transcript: ENST00000379022
  gene symbol: NRCAM
  hgvsc: ENST00000379022.4:c.-39delA
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368314
  ensembl transcript: ENST00000379028
  gene symbol: NRCAM
  hgvsc: ENST00000379028.3:c.-39delA
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000397544
  ensembl transcript: ENST00000419936
  gene symbol: NRCAM
  hgvsc: ENST00000419936.1:c.-39delA
  variant of: http://identifiers.org/hgnc/7994
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: CT
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-107880553-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 107880553
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 107880553
    reference: chr 7
allele count: 2
allele frequency: 1.671793500066872e-5
allele num: 119632
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390868
  ensembl transcript: ENST00000442580
  gene symbol: NRCAM
  hgvsc: ENST00000442580.1:c.-45A>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368314
  ensembl transcript: ENST00000379028
  gene symbol: NRCAM
  hgvsc: ENST00000379028.3:c.-45A>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000390421
  ensembl transcript: ENST00000417701
  gene symbol: NRCAM
  hgvsc: ENST00000417701.1:c.-45A>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000408203
  ensembl transcript: ENST00000456431
  gene symbol: NRCAM
  hgvsc: ENST00000456431.1:c.-45A>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368310
  ensembl transcript: ENST00000379024
  gene symbol: NRCAM
  hgvsc: ENST00000379024.4:c.-45A>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000393663
  ensembl transcript: ENST00000418239
  gene symbol: NRCAM
  hgvsc: ENST00000418239.1:c.-45A>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000397544
  ensembl transcript: ENST00000419936
  gene symbol: NRCAM
  hgvsc: ENST00000419936.1:c.-45A>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000407858
  ensembl transcript: ENST00000413765
  gene symbol: NRCAM
  hgvsc: ENST00000413765.2:c.-45A>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000325269
  ensembl transcript: ENST00000351718
  gene symbol: NRCAM
  hgvsc: ENST00000351718.4:c.-45A>G
  variant of: http://identifiers.org/hgnc/7994
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000091129
  ensembl protein: ENSP00000368308
  ensembl transcript: ENST00000379022
  gene symbol: NRCAM
  hgvsc: ENST00000379022.4:c.-45A>G
  variant of: http://identifiers.org/hgnc/7994
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4238
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9872
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10011
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16722
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1186
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

7-108112796-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112796
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112796
    reference: chr 7
allele count: 24
allele frequency: 2.245046865353314e-4
allele num: 106902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.*49A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.*49A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.*49A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.*49A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.*49A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.*49A>G
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5887
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13562
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8307
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4215
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12126
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2035
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3025
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2283
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

7-108112809-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112809
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112809
    reference: chr 7
allele count: 1
allele frequency: 9.340556697179152e-6
allele num: 107060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.*36G>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.*36G>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.*36G>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.*36G>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.*36G>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.*36G>C
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3890
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5531
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2248
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25302
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5786
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4513
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4819
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2309
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1076
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff

7-108112814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112814
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112814
    reference: chr 7
allele count: 1
allele frequency: 9.330621232761677e-6
allele num: 107174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.*31G>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.*31G>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.*31G>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5186
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5811
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4902
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

7-108112816-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112816
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112816
    reference: chr 7
allele count: 1
allele frequency: 9.322444717902823e-6
allele num: 107268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.*29A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.*29A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.*29A>G
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6232
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5821
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

7-108112824-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112824
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112824
    reference: chr 7
allele count: 3
allele frequency: 2.790490010045764e-5
allele num: 107508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.*21C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.*21C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.*21C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.*21C>T
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2471
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18979
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 657
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5695
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4816
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28112
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1283
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

7-108112825-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112825
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112825
    reference: chr 7
allele count: 10
allele frequency: 9.301806410804978e-5
allele num: 107506
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.*20T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.*20T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.*20T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.*20T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.*20T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.*20T>C
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14660
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4430
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2469
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19117
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2005
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5808
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4820
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

7-108112834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112834
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112834
    reference: chr 7
allele count: 639
allele frequency: 5.913162570328694e-3
allele num: 108064
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.*11C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.*11C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.*11C>T
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 1.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 5.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 4.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 3.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 9.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 19303
  bin: 2.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 6.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 3.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 14959
  bin: 2.75e1
  variant carriers: 62
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5795
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6177
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28815
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 9.25e1
  variant carriers: 5
num of homozygotes: 16
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

7-108112837-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112837
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112837
    reference: chr 7
allele count: 1
allele frequency: 9.227816329543778e-6
allele num: 108368
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.*8A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.*8A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.*8A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.*8A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.*8A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.*8A>G
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19386
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5639
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2003
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6333
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-108112838-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112838
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112838
    reference: chr 7
allele count: 3
allele frequency: 2.766710934041611e-5
allele num: 108432
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.*7T>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.*7T>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.*7T>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.*7T>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.*7T>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.*7T>G
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6332
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5646
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15199
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6388
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

7-108112839-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112839
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112839
    reference: chr 7
allele count: 1
allele frequency: 9.219308920603312e-6
allele num: 108468
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.*6A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.*6A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.*6A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.*6A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.*6A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.*6A>G
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6333
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5897
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6401
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29193
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4646
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

7-108112871-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112871
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112871
    reference: chr 7
allele count: 1
allele frequency: 8.824567596187787e-6
allele num: 113320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2323G>C
  hgvsp: ENSP00000406779.1:p.Gly775Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2137G>C
  hgvsp: ENSP00000394988.2:p.Gly713Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.2023G>C
  hgvsp: ENSP00000387789.1:p.Gly675Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2323G>C
  hgvsp: ENSP00000257694.8:p.Gly775Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2323G>C
  hgvsp: ENSP00000410804.1:p.Gly775Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2137G>C
  hgvsp: ENSP00000373380.5:p.Gly713Arg
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2439
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4642
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5457
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5853
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly775Arg
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-108112877-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112877
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112876
    reference: chr 7
allele count: 1
allele frequency: 8.729355075247041e-6
allele num: 114556
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2316delG
  hgvsp: ENSP00000410804.1:p.Met772IlefsTer20
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2316delG
  hgvsp: ENSP00000406779.1:p.Met772IlefsTer20
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2130delG
  hgvsp: ENSP00000394988.2:p.Met710IlefsTer20
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2130delG
  hgvsp: ENSP00000373380.5:p.Met710IlefsTer20
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2316delG
  hgvsp: ENSP00000257694.8:p.Met772IlefsTer20
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.2016delG
  hgvsp: ENSP00000387789.1:p.Met672IlefsTer20
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15802
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29350
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5807
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4640
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Met772IlefsTer20
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: AC
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-108112879-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112879
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112879
    reference: chr 7
allele count: 7
allele frequency: 6.087803520489807e-5
allele num: 114984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2315T>A
  hgvsp: ENSP00000257694.8:p.Met772Lys
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.2015T>A
  hgvsp: ENSP00000387789.1:p.Met672Lys
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2129T>A
  hgvsp: ENSP00000373380.5:p.Met710Lys
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2129T>A
  hgvsp: ENSP00000394988.2:p.Met710Lys
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2315T>A
  hgvsp: ENSP00000410804.1:p.Met772Lys
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2315T>A
  hgvsp: ENSP00000406779.1:p.Met772Lys
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19247
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2950
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6305
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15788
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4643
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 4928
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29274
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met772Lys
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-108112902-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112902
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112902
    reference: chr 7
allele count: 241
allele frequency: 2.070055487794403e-3
allele num: 116422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2106T>C
  hgvsp: ENST00000388728.5:c.2106T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2292T>C
  hgvsp: ENST00000422087.1:c.2292T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2292T>C
  hgvsp: ENST00000436062.1:c.2292T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2292T>C
  hgvsp: ENST00000257694.8:c.2292T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2106T>C
  hgvsp: ENST00000426128.2:c.2106T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1992T>C
  hgvsp: ENST00000453144.1:c.1992T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 19246
  bin: 2.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 4.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14757
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 5653
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2386
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 6029
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4214
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2253
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27878
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Asp764Asp
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

7-108112913-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112913
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112913
    reference: chr 7
allele count: 1
allele frequency: 8.602594542514021e-6
allele num: 116244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1981A>G
  hgvsp: ENSP00000387789.1:p.Lys661Glu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2281A>G
  hgvsp: ENSP00000257694.8:p.Lys761Glu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2095A>G
  hgvsp: ENSP00000373380.5:p.Lys699Glu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2281A>G
  hgvsp: ENSP00000410804.1:p.Lys761Glu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2281A>G
  hgvsp: ENSP00000406779.1:p.Lys761Glu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2095A>G
  hgvsp: ENSP00000394988.2:p.Lys699Glu
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5898
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14439
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5456
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3993
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys761Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS

7-108112917-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112917
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112915
    reference: chr 7
allele count: 2
allele frequency: 1.722415515518964e-5
allele num: 116116
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2275_2276delCT
  hgvsp: ENSP00000257694.8:p.Leu759AlafsTer4
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2275_2276delCT
  hgvsp: ENSP00000410804.1:p.Leu759AlafsTer4
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1975_1976delCT
  hgvsp: ENSP00000387789.1:p.Leu659AlafsTer4
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2089_2090delCT
  hgvsp: ENSP00000394988.2:p.Leu697AlafsTer4
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2089_2090delCT
  hgvsp: ENSP00000373380.5:p.Leu697AlafsTer4
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2275_2276delCT
  hgvsp: ENSP00000406779.1:p.Leu759AlafsTer4
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5617
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19991
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14528
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1596
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1113
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3908
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu759AlafsTer4
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: CAG
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

7-108112920-AGTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112920
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112917
    reference: chr 7
allele count: 2
allele frequency: 1.721970623181168e-5
allele num: 116146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2271_2273delAAC
  hgvsp: ENSP00000406779.1:p.Thr758del
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1971_1973delAAC
  hgvsp: ENSP00000387789.1:p.Thr658del
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2085_2087delAAC
  hgvsp: ENSP00000394988.2:p.Thr696del
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2271_2273delAAC
  hgvsp: ENSP00000257694.8:p.Thr758del
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2271_2273delAAC
  hgvsp: ENSP00000410804.1:p.Thr758del
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2085_2087delAAC
  hgvsp: ENSP00000373380.5:p.Thr696del
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14611
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3841
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4605
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1727
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr758del
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: AGTT
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

7-108112930-TCTTGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112930
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112925
    reference: chr 7
allele count: 2
allele frequency: 1.718390212049352e-5
allele num: 116388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2259_2263delTCAAG
  hgvsp: ENSP00000406779.1:p.Ser753ArgfsTer9
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2073_2077delTCAAG
  hgvsp: ENSP00000394988.2:p.Ser691ArgfsTer9
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2259_2263delTCAAG
  hgvsp: ENSP00000257694.8:p.Ser753ArgfsTer9
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2073_2077delTCAAG
  hgvsp: ENSP00000373380.5:p.Ser691ArgfsTer9
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2259_2263delTCAAG
  hgvsp: ENSP00000410804.1:p.Ser753ArgfsTer9
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1959_1963delTCAAG
  hgvsp: ENSP00000387789.1:p.Ser653ArgfsTer9
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21221
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5497
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser753ArgfsTer9
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: TCTTGA
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum

7-108112930-TCTTGACTTAATA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112930
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112918
    reference: chr 7
allele count: 1
allele frequency: 8.591951060246761e-6
allele num: 116388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14897
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3584
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5497
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4600
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile751_Glu755delinsLys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: TCTTGACTTAATA
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

7-108112931-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112931
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112931
    reference: chr 7
allele count: 1
allele frequency: 8.608370779746225e-6
allele num: 116166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2263G>A
  hgvsp: ENSP00000257694.8:p.Glu755Lys
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2263G>A
  hgvsp: ENSP00000410804.1:p.Glu755Lys
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2077G>A
  hgvsp: ENSP00000394988.2:p.Glu693Lys
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2077G>A
  hgvsp: ENSP00000373380.5:p.Glu693Lys
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1963G>A
  hgvsp: ENSP00000387789.1:p.Glu655Lys
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2263G>A
  hgvsp: ENSP00000406779.1:p.Glu755Lys
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4568
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2291
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29788
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5412
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu755Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

7-108112933-TGACTTAATA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112933
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112924
    reference: chr 7
allele count: 1
allele frequency: 8.58619682997613e-6
allele num: 116466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 4366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30009
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile751_Gln754delinsLys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: TGACTTAATA
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

7-108112941-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112941
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112941
    reference: chr 7
allele count: 1
allele frequency: 8.554612647139337e-6
allele num: 116896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1953A>C
  hgvsp: ENST00000453144.1:c.1953A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2253A>C
  hgvsp: ENST00000422087.1:c.2253A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2067A>C
  hgvsp: ENST00000388728.5:c.2067A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2253A>C
  hgvsp: ENST00000257694.8:c.2253A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2253A>C
  hgvsp: ENST00000436062.1:c.2253A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2067A>C
  hgvsp: ENST00000426128.2:c.2067A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3599
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5653
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile751Ile
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

7-108112960-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112960
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112961
    reference: chr 7
allele count: 1
allele frequency: 8.43397881384522e-6
allele num: 118568
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2233dupA
  hgvsp: ENSP00000257694.8:p.Met745AsnfsTer19
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1933dupA
  hgvsp: ENSP00000387789.1:p.Met645AsnfsTer19
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2233dupA
  hgvsp: ENSP00000406779.1:p.Met745AsnfsTer19
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2047dupA
  hgvsp: ENSP00000394988.2:p.Met683AsnfsTer19
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2047dupA
  hgvsp: ENSP00000373380.5:p.Met683AsnfsTer19
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2233dupA
  hgvsp: ENSP00000410804.1:p.Met745AsnfsTer19
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1678
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met745AsnfsTer19
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

7-108112962-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112962
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112962
    reference: chr 7
allele count: 1
allele frequency: 8.41779184484326e-6
allele num: 118796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2046A>G
  hgvsp: ENST00000388728.5:c.2046A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1932A>G
  hgvsp: ENST00000453144.1:c.1932A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2232A>G
  hgvsp: ENST00000436062.1:c.2232A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2232A>G
  hgvsp: ENST00000422087.1:c.2232A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2232A>G
  hgvsp: ENST00000257694.8:c.2232A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2046A>G
  hgvsp: ENST00000426128.2:c.2046A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys744Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

7-108112977-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112977
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112977
    reference: chr 7
allele count: 2
allele frequency: 1.666777785185679e-5
allele num: 119992
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1917A>C
  hgvsp: ENSP00000402274.1:p.Glu639Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2031A>C
  hgvsp: ENSP00000373380.5:p.Glu677Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1917A>C
  hgvsp: ENSP00000387789.1:p.Glu639Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2217A>C
  hgvsp: ENSP00000410804.1:p.Glu739Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2217A>C
  hgvsp: ENSP00000406779.1:p.Glu739Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2031A>C
  hgvsp: ENSP00000394988.2:p.Glu677Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2217A>C
  hgvsp: ENSP00000257694.8:p.Glu739Asp
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41239
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu739Asp
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

7-108112982-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112982
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112982
    reference: chr 7
allele count: 2
allele frequency: 1.663506005256679e-5
allele num: 120228
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2026A>G
  hgvsp: ENSP00000373380.5:p.Ile676Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2212A>G
  hgvsp: ENSP00000410804.1:p.Ile738Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2212A>G
  hgvsp: ENSP00000406779.1:p.Ile738Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1912A>G
  hgvsp: ENSP00000387789.1:p.Ile638Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2212A>G
  hgvsp: ENSP00000257694.8:p.Ile738Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2026A>G
  hgvsp: ENSP00000394988.2:p.Ile676Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1912A>G
  hgvsp: ENSP00000402274.1:p.Ile638Val
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4591
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile738Val
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-108112982-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112982
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112982
    reference: chr 7
allele count: 1
allele frequency: 8.317530026283395e-6
allele num: 120228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2212A>C
  hgvsp: ENSP00000406779.1:p.Ile738Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1912A>C
  hgvsp: ENSP00000387789.1:p.Ile638Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2212A>C
  hgvsp: ENSP00000257694.8:p.Ile738Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2026A>C
  hgvsp: ENSP00000394988.2:p.Ile676Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2212A>C
  hgvsp: ENSP00000410804.1:p.Ile738Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2026A>C
  hgvsp: ENSP00000373380.5:p.Ile676Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1912A>C
  hgvsp: ENSP00000402274.1:p.Ile638Leu
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18028
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6229
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1903
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4591
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile738Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

7-108112995-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108112995
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108112995
    reference: chr 7
allele count: 2
allele frequency: 1.659613310098747e-5
allele num: 120510
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2013A>G
  hgvsp: ENST00000388728.5:c.2013A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2013A>G
  hgvsp: ENST00000426128.2:c.2013A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2199A>G
  hgvsp: ENST00000257694.8:c.2199A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1899A>G
  hgvsp: ENST00000453085.1:c.1899A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2199A>G
  hgvsp: ENST00000436062.1:c.2199A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2199A>G
  hgvsp: ENST00000422087.1:c.2199A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1899A>G
  hgvsp: ENST00000453144.1:c.1899A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4589
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu733Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP

7-108113007-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113007
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113007
    reference: chr 7
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1887G>A
  hgvsp: ENST00000453144.1:c.1887G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2187G>A
  hgvsp: ENST00000422087.1:c.2187G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1887G>A
  hgvsp: ENST00000453085.1:c.1887G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.2001G>A
  hgvsp: ENST00000388728.5:c.2001G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.2001G>A
  hgvsp: ENST00000426128.2:c.2001G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2187G>A
  hgvsp: ENST00000257694.8:c.2187G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2187G>A
  hgvsp: ENST00000436062.1:c.2187G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln729Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD

7-108113012-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113012
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113012
    reference: chr 7
allele count: 2
allele frequency: 1.65708320214758e-5
allele num: 120694
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1996G>A
  hgvsp: ENSP00000373380.5:p.Asp666Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1996G>A
  hgvsp: ENSP00000394988.2:p.Asp666Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1882G>A
  hgvsp: ENSP00000387789.1:p.Asp628Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2182G>A
  hgvsp: ENSP00000410804.1:p.Asp728Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1882G>A
  hgvsp: ENSP00000402274.1:p.Asp628Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2182G>A
  hgvsp: ENSP00000257694.8:p.Asp728Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2182G>A
  hgvsp: ENSP00000406779.1:p.Asp728Asn
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2180
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6269
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp728Asn
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-108113027-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113027
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113027
    reference: chr 7
allele count: 1
allele frequency: 8.280339162692104e-6
allele num: 120768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1981C>T
  hgvsp: ENSP00000373380.5:p.Arg661Ter
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2167C>T
  hgvsp: ENSP00000410804.1:p.Arg723Ter
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1981C>T
  hgvsp: ENSP00000394988.2:p.Arg661Ter
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2167C>T
  hgvsp: ENSP00000406779.1:p.Arg723Ter
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1867C>T
  hgvsp: ENSP00000387789.1:p.Arg623Ter
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2167C>T
  hgvsp: ENSP00000257694.8:p.Arg723Ter
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1867C>T
  hgvsp: ENSP00000402274.1:p.Arg623Ter
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6271
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1919
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg723Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS

7-108113037-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113037
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113037
    reference: chr 7
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2157A>G
  hgvsp: ENST00000422087.1:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1857A>G
  hgvsp: ENST00000453144.1:c.1857A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1857A>G
  hgvsp: ENST00000453085.1:c.1857A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2157A>G
  hgvsp: ENST00000436062.1:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2157A>G
  hgvsp: ENST00000257694.8:c.2157A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1971A>G
  hgvsp: ENST00000388728.5:c.1971A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1971A>G
  hgvsp: ENST00000426128.2:c.1971A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42191
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2179
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6278
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu719Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

7-108113045-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113045
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113045
    reference: chr 7
allele count: 1
allele frequency: 8.279242283746192e-6
allele num: 120784
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2149A>T
  hgvsp: ENSP00000257694.8:p.Ile717Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2149A>T
  hgvsp: ENSP00000410804.1:p.Ile717Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1963A>T
  hgvsp: ENSP00000394988.2:p.Ile655Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1963A>T
  hgvsp: ENSP00000373380.5:p.Ile655Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2149A>T
  hgvsp: ENSP00000406779.1:p.Ile717Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1849A>T
  hgvsp: ENSP00000387789.1:p.Ile617Leu
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1849A>T
  hgvsp: ENSP00000402274.1:p.Ile617Leu
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2297
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4586
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile717Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

7-108113052-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113052
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113052
    reference: chr 7
allele count: 1
allele frequency: 8.28225940036442e-6
allele num: 120740
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1956T>C
  hgvsp: ENST00000388728.5:c.1956T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1842T>C
  hgvsp: ENST00000453144.1:c.1842T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2142T>C
  hgvsp: ENST00000422087.1:c.2142T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1842T>C
  hgvsp: ENST00000453085.1:c.1842T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2142T>C
  hgvsp: ENST00000257694.8:c.2142T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1956T>C
  hgvsp: ENST00000426128.2:c.1956T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2142T>C
  hgvsp: ENST00000436062.1:c.2142T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Cys714Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

7-108113058-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113058
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113058
    reference: chr 7
allele count: 1
allele frequency: 8.288300235387727e-6
allele num: 120652
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2136A>G
  hgvsp: ENST00000436062.1:c.2136A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2136A>G
  hgvsp: ENST00000422087.1:c.2136A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1836A>G
  hgvsp: ENST00000453144.1:c.1836A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1950A>G
  hgvsp: ENST00000426128.2:c.1950A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1950A>G
  hgvsp: ENST00000388728.5:c.1950A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1836A>G
  hgvsp: ENST00000453085.1:c.1836A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2136A>G
  hgvsp: ENST00000257694.8:c.2136A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18414
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42046
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6269
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val712Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

7-108113060-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113060
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113060
    reference: chr 7
allele count: 14
allele frequency: 1.160823853271865e-4
allele num: 120604
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2134G>A
  hgvsp: ENSP00000410804.1:p.Val712Ile
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2134G>A
  hgvsp: ENSP00000257694.8:p.Val712Ile
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2134G>A
  hgvsp: ENSP00000406779.1:p.Val712Ile
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1834G>A
  hgvsp: ENSP00000387789.1:p.Val612Ile
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1948G>A
  hgvsp: ENSP00000373380.5:p.Val650Ile
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1948G>A
  hgvsp: ENSP00000394988.2:p.Val650Ile
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1834G>A
  hgvsp: ENSP00000402274.1:p.Val612Ile
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42016
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val712Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum

7-108113065-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113065
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113065
    reference: chr 7
allele count: 2
allele frequency: 1.659833684664797e-5
allele num: 120494
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1943A>G
  hgvsp: ENSP00000394988.2:p.Asn648Ser
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1829A>G
  hgvsp: ENSP00000387789.1:p.Asn610Ser
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1943A>G
  hgvsp: ENSP00000373380.5:p.Asn648Ser
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2129A>G
  hgvsp: ENSP00000406779.1:p.Asn710Ser
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2129A>G
  hgvsp: ENSP00000410804.1:p.Asn710Ser
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1829A>G
  hgvsp: ENSP00000402274.1:p.Asn610Ser
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2129A>G
  hgvsp: ENSP00000257694.8:p.Asn710Ser
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4585
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2166
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn710Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/7-108113104-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113104
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113104
    reference: chr 7
allele count: 1
allele frequency: 8.506584096090374e-6
allele num: 117556
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2090T>G
  hgvsp: ENSP00000410804.1:p.Leu697Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1790T>G
  hgvsp: ENSP00000402274.1:p.Leu597Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1904T>G
  hgvsp: ENSP00000373380.5:p.Leu635Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1904T>G
  hgvsp: ENSP00000394988.2:p.Leu635Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2090T>G
  hgvsp: ENSP00000257694.8:p.Leu697Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1790T>G
  hgvsp: ENSP00000387789.1:p.Leu597Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2090T>G
  hgvsp: ENSP00000406779.1:p.Leu697Arg
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6021
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4585
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu697Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

7-108113111-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113111
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113111
    reference: chr 7
allele count: 1
allele frequency: 8.579125272387228e-6
allele num: 116562
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1783A>G
  hgvsp: ENSP00000402274.1:p.Ile595Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1897A>G
  hgvsp: ENSP00000373380.5:p.Ile633Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1897A>G
  hgvsp: ENSP00000394988.2:p.Ile633Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2083A>G
  hgvsp: ENSP00000257694.8:p.Ile695Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2083A>G
  hgvsp: ENSP00000406779.1:p.Ile695Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2083A>G
  hgvsp: ENSP00000410804.1:p.Ile695Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1783A>G
  hgvsp: ENSP00000387789.1:p.Ile595Val
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24447
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3708
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37714
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ile695Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

7-108113113-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113113
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113113
    reference: chr 7
allele count: 1
allele frequency: 8.600227045994014e-6
allele num: 116276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2081A>G
  hgvsp: ENSP00000257694.8:p.His694Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1781A>G
  hgvsp: ENSP00000387789.1:p.His594Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2081A>G
  hgvsp: ENSP00000406779.1:p.His694Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1781A>G
  hgvsp: ENSP00000402274.1:p.His594Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2081A>G
  hgvsp: ENSP00000410804.1:p.His694Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1895A>G
  hgvsp: ENSP00000394988.2:p.His632Arg
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1895A>G
  hgvsp: ENSP00000373380.5:p.His632Arg
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
hgvs: p.His694Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

7-108113116-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113116
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113116
    reference: chr 7
allele count: 1
allele frequency: 8.631106507854307e-6
allele num: 115860
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1892T>A
  hgvsp: ENSP00000373380.5:p.Val631Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1778T>A
  hgvsp: ENSP00000402274.1:p.Val593Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2078T>A
  hgvsp: ENSP00000406779.1:p.Val693Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2078T>A
  hgvsp: ENSP00000257694.8:p.Val693Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1892T>A
  hgvsp: ENSP00000394988.2:p.Val631Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2078T>A
  hgvsp: ENSP00000410804.1:p.Val693Asp
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1778T>A
  hgvsp: ENSP00000387789.1:p.Val593Asp
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17588
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23873
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val693Asp
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

7-108113118-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113118
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113118
    reference: chr 7
allele count: 5
allele frequency: 4.323838184679777e-5
allele num: 115638
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1776A>G
  hgvsp: ENST00000453144.1:c.1776A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1890A>G
  hgvsp: ENST00000426128.2:c.1890A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1890A>G
  hgvsp: ENST00000388728.5:c.1890A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2076A>G
  hgvsp: ENST00000422087.1:c.2076A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1776A>G
  hgvsp: ENST00000453085.1:c.1776A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2076A>G
  hgvsp: ENST00000257694.8:c.2076A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2076A>G
  hgvsp: ENST00000436062.1:c.2076A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4345
  bin: 2.25e1
  variant carriers: 0
hgvs: c.2076A>G
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

7-108113127-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113127
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113127
    reference: chr 7
allele count: 3
allele frequency: 2.624304559291788e-5
allele num: 114316
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-8T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-8T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-8T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-8T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-8T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-8T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-8T>C
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4588
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5802
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2075-8T>C
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

7-108113128-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113128
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113128
    reference: chr 7
allele count: 1
allele frequency: 8.752735229759301e-6
allele num: 114250
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-9C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-9C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-9C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-9C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-9C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-9C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-9C>G
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22529
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6058
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35276
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

7-108113133-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113133
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113133
    reference: chr 7
allele count: 10
allele frequency: 8.81896430083251e-5
allele num: 113392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-14T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-14T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-14T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-14T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-14T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-14T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-14T>C
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16910
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21512
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4593
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 5428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

7-108113133-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113133
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113133
    reference: chr 7
allele count: 1
allele frequency: 8.818964300832511e-6
allele num: 113392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-14T>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-14T>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-14T>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-14T>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-14T>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-14T>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-14T>A
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3080
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2279
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

7-108113141-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113141
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113141
    reference: chr 7
allele count: 2
allele frequency: 1.800147612104192e-5
allele num: 111102
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-22C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-22C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-22C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-22C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-22C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-22C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-22C>A
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2330
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15523
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3392
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3319
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5021
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4584
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5719
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-108113147-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113147
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113147
    reference: chr 7
allele count: 1
allele frequency: 9.026900162484202e-6
allele num: 110780
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-28C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-28C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-28C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-28C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-28C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-28C>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-28C>G
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15374
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4966
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2504
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6026
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1820
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1668
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

7-108113148-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113148
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113148
    reference: chr 7
allele count: 4
allele frequency: 3.615067601764153e-5
allele num: 110648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-29C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-29C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-29C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-29C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-29C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-29C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-29C>T
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17064
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15111
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5645
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6059
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4582
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2670
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

7-108113150-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113150
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113149
    reference: chr 7
allele count: 14
allele frequency: 1.27136344648468e-4
allele num: 110118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-32delT
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-32delT
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-32delT
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-32delT
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-32delT
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-32delT
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-32delT
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15788
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5816
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6947
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3715
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4590
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5881
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2723
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: GA
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

7-108113152-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113152
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113152
    reference: chr 7
allele count: 1
allele frequency: 9.08909127265456e-6
allele num: 110022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-33A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-33A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-33A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-33A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-33A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-33A>G
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-33A>G
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6947
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3207
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1965
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1372
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4764
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25391
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

7-108113159-A-AGAGGGGAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113159
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113168
    reference: chr 7
allele count: 2
allele frequency: 1.834391165572146e-5
allele num: 109028
alternate allele: AGAGGGGAAG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10496
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5024
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13545
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4046
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-108113160-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113160
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113160
    reference: chr 7
allele count: 4
allele frequency: 3.672285263119239e-5
allele num: 108924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-41C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-41C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-41C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-41C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-41C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-41C>T
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-41C>T
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11890
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5009
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6821
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10494
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4577
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4043
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

7-108113163-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108113163
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108113163
    reference: chr 7
allele count: 1
allele frequency: 9.243511055239222e-6
allele num: 108184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1889-44C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2075-44C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1775-44C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1889-44C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2075-44C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1775-44C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2075-44C>A
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14366
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5023
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4776
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4114
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1887
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4571
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

7-108119579-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108119579
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108119579
    reference: chr 7
allele count: 1
allele frequency: 8.713382012094175e-6
allele num: 114766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2074+49C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1774+49C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1888+49C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1888+49C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2074+49C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1774+49C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2074+49C>A
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

7-108119582-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108119582
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108119582
    reference: chr 7
allele count: 3
allele frequency: 2.611920806561145e-5
allele num: 114858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1774+46T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2074+46T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2074+46T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1774+46T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1888+46T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1888+46T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2074+46T>C
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6516
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9307
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

7-108119592-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108119592
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108119592
    reference: chr 7
allele count: 1
allele frequency: 8.686135191008112e-6
allele num: 115126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1774+36T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1888+36T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2074+36T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1774+36T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1888+36T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2074+36T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2074+36T>C
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9321
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

7-108119596-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108119596
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108119596
    reference: chr 7
allele count: 10
allele frequency: 8.676036786395974e-5
allele num: 115260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1774+32A>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1774+32A>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1888+32A>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1888+32A>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2074+32A>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2074+32A>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2074+32A>C
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

7-108119597-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108119597
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108119597
    reference: chr 7
allele count: 1
allele frequency: 8.673177331783726e-6
allele num: 115298
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1774+31C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1774+31C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1888+31C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1888+31C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2074+31C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2074+31C>A
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2074+31C>A
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15499
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36365
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-108119617-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108119617
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108119617
    reference: chr 7
allele count: 1
allele frequency: 8.506873553831496e-6
allele num: 117552
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1888+11T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2074+11T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2074+11T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1774+11T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1888+11T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2074+11T>C
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1774+11T>C
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25316
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9451
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2164
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

7-108119636-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108119636
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108119636
    reference: chr 7
allele count: 1
allele frequency: 8.337919188887221e-6
allele num: 119934
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1880A>T
  hgvsp: ENSP00000373380.5:p.Asp627Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2066A>T
  hgvsp: ENSP00000257694.8:p.Asp689Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2066A>T
  hgvsp: ENSP00000410804.1:p.Asp689Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1766A>T
  hgvsp: ENSP00000387789.1:p.Asp589Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1880A>T
  hgvsp: ENSP00000394988.2:p.Asp627Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1766A>T
  hgvsp: ENSP00000402274.1:p.Asp589Val
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2066A>T
  hgvsp: ENSP00000406779.1:p.Asp689Val
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9574
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3719
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp689Val
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

7-108119640-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108119640
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108119640
    reference: chr 7
allele count: 1
allele frequency: 8.312275568559649e-6
allele num: 120304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1762A>G
  hgvsp: ENSP00000402274.1:p.Thr588Ala
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1876A>G
  hgvsp: ENSP00000373380.5:p.Thr626Ala
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2062A>G
  hgvsp: ENSP00000410804.1:p.Thr688Ala
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2062A>G
  hgvsp: ENSP00000406779.1:p.Thr688Ala
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1876A>G
  hgvsp: ENSP00000394988.2:p.Thr626Ala
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2062A>G
  hgvsp: ENSP00000257694.8:p.Thr688Ala
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1762A>G
  hgvsp: ENSP00000387789.1:p.Thr588Ala
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9610
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2201
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr688Ala
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP

7-108119645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108119645
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108119645
    reference: chr 7
allele count: 1
allele frequency: 8.288987251537607e-6
allele num: 120642
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1871G>A
  hgvsp: ENSP00000373380.5:p.Ser624Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1871G>A
  hgvsp: ENSP00000394988.2:p.Ser624Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1757G>A
  hgvsp: ENSP00000387789.1:p.Ser586Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2057G>A
  hgvsp: ENSP00000257694.8:p.Ser686Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1757G>A
  hgvsp: ENSP00000402274.1:p.Ser586Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2057G>A
  hgvsp: ENSP00000406779.1:p.Ser686Asn
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2057G>A
  hgvsp: ENSP00000410804.1:p.Ser686Asn
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3727
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser686Asn
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

7-108119646-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 108119646
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 108119646
    reference: chr 7
allele count: 1
allele frequency: 8.28363154406892e-6
allele num: 120720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000394988
  ensembl transcript: ENST00000426128
  gene symbol: PNPLA8
  hgvsc: ENST00000426128.2:c.1870A>G
  hgvsp: ENSP00000394988.2:p.Ser624Gly
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000410804
  ensembl transcript: ENST00000422087
  gene symbol: PNPLA8
  hgvsc: ENST00000422087.1:c.2056A>G
  hgvsp: ENSP00000410804.1:p.Ser686Gly
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000257694
  ensembl transcript: ENST00000257694
  gene symbol: PNPLA8
  hgvsc: ENST00000257694.8:c.2056A>G
  hgvsp: ENSP00000257694.8:p.Ser686Gly
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000387789
  ensembl transcript: ENST00000453144
  gene symbol: PNPLA8
  hgvsc: ENST00000453144.1:c.1756A>G
  hgvsp: ENSP00000387789.1:p.Ser586Gly
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000373380
  ensembl transcript: ENST00000388728
  gene symbol: PNPLA8
  hgvsc: ENST00000388728.5:c.1870A>G
  hgvsp: ENSP00000373380.5:p.Ser624Gly
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000402274
  ensembl transcript: ENST00000453085
  gene symbol: PNPLA8
  hgvsc: ENST00000453085.1:c.1756A>G
  hgvsp: ENSP00000402274.1:p.Ser586Gly
  variant of: http://identifiers.org/hgnc/28900
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135241
  ensembl protein: ENSP00000406779
  ensembl transcript: ENST00000436062
  gene symbol: PNPLA8
  hgvsc: ENST00000436062.1:c.2056A>G
  hgvsp: ENSP00000406779.1:p.Ser686Gly
  variant of: http://identifiers.org/hgnc/28900
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser686Gly
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 6349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16336
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66350
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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SIO_000300: 1.368e1

BaseQRankSum
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MQ
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ClippingRankSum
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MQRankSum
type: SiteQuality
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.75e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66298
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
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SIO_000300: -2.295e0

VQSLOD
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MQ
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SIO_000300: 6.056e1

QD
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BaseQRankSum
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InbreedingCoeff
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DP
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SIO_000300: 2.091662e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
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SIO_000300: 1.48e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.533228565384267e-5
allele num: 66178
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.655e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

VQSLOD
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SIO_000300: -6.316000000000001e-1

InbreedingCoeff
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ClippingRankSum
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SIO_000300: 5.78e-1

QD
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.909000000000001e0

DP
type: SiteQuality
SIO_000300: 2.077607e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.88e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66162
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.23e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.3e-2

DP
type: SiteQuality
SIO_000300: 2.07443e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.632e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.170554115759595e-5
allele num: 16206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.59e0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

DP
type: SiteQuality
SIO_000300: 2.053489e6

QD
type: SiteQuality
SIO_000300: 1.414e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 4.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
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allele frequency: 3.489792357354738e-4
allele num: 11462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65998
num of homozygotes: 0

DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 3.4e-3

ReadPosRankSum
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VQSLOD
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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BaseQRankSum
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SIO_000300: -3.59e0

MQRankSum
type: SiteQuality
SIO_000300: 2.85e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.234110823151919e-4
allele num: 16206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65998
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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FS
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 2.053489e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
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SIO_000300: -3.59e0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3998
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.037667071688943e-5
allele num: 65840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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MQ
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.042261e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1541
bin: 8.25e1
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GenotypeQuality
all individuals: 1342
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.423206077005836e-4
allele num: 61346
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.003606491685033e-4
allele num: 9982
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.530456075910621e-4
allele num: 6534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8816
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.58e0

DP
type: SiteQuality
SIO_000300: 1.454994e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.35e0

QD
type: SiteQuality
SIO_000300: 1.381e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

GenotypeQuality
all individuals: 2013
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 864
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1524
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.627445236467793e-5
allele num: 61446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.872e0

VQSLOD
type: SiteQuality
SIO_000300: -1.772e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.483249e6

QD
type: SiteQuality
SIO_000300: 5.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 4818
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 597
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 863
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.997660608241857e-5
allele num: 11114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8910
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.494653e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.309e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 3.802e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
type: SiteQuality
SIO_000300: 5.643e1

VQSLOD
type: SiteQuality
SIO_000300: -1.447e0

QD
type: SiteQuality
SIO_000300: 5.29e0

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
all individuals: 2002
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 862
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27042
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4817
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5067
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.11632060727841e-4
allele num: 8958
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61542
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.274e1

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.26e-1

DP
type: SiteQuality
SIO_000300: 1.498852e6

GenotypeQuality
all individuals: 2008
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5816
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61636
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.386065378191362e-4
allele num: 8382
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.102779003087781e-4
allele num: 9068
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.77e-1

FS
type: SiteQuality
SIO_000300: 2.071e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.110000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.65e0

DP
type: SiteQuality
SIO_000300: 1.514484e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.834e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

GenotypeQuality
all individuals: 1322
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1274
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2240
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5813
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1796
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9076
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.000800160032006e-4
allele num: 9998
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.48971380362126e-5
allele num: 61636
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.067484662576687e-4
allele num: 6520
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.311e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

DP
type: SiteQuality
SIO_000300: 1.517271e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.73e0

GenotypeQuality
all individuals: 558
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 935
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5165
bin: 9.75e1
variant carriers: 605

GenotypeQuality
all individuals: 2206
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1258
bin: 2.75e1
variant carriers: 1

Latino
type: Population
allele count: 37
allele frequency: 3.323154302137597e-3
allele num: 11134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.395421032207994e-4
allele num: 61848
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.278772378516624e-3
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

African
type: Population
allele count: 579
allele frequency: 5.777289962083416e-2
allele num: 10022
num of homozygotes: 16

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.068147831659902e-4
allele num: 9362
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.06e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.115e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.774e0

DP
type: SiteQuality
SIO_000300: 1.537468e6

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

QD
type: SiteQuality
SIO_000300: 1.145e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-2

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1448
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5895
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29251
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4650
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 9.974067424695791e-5
allele num: 10026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.859e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.526447e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.309e0

QD
type: SiteQuality
SIO_000300: 6.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 5890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4649
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29248
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1451
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.992220227408737e-4
allele num: 10026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

FS
type: SiteQuality
SIO_000300: 4.855e0

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

DP
type: SiteQuality
SIO_000300: 1.527196e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10024
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.976660682226212e-5
allele num: 11140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6524
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.634e1

MQRankSum
type: SiteQuality
SIO_000300: -6.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

DP
type: SiteQuality
SIO_000300: 1.527698e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1940
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 841
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.584133320660267e-5
allele num: 63126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13180
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQ
type: SiteQuality
SIO_000300: 5.851e1

VQSLOD
type: SiteQuality
SIO_000300: -2.48e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.870000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.0655e1

MQRankSum
type: SiteQuality
SIO_000300: -1.155e0

QD
type: SiteQuality
SIO_000300: 1.201e1

DP
type: SiteQuality
SIO_000300: 1.559295e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.33e0

GenotypeQuality
all individuals: 700
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1929
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578581802108985e-5
allele num: 63348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQ
type: SiteQuality
SIO_000300: 5.94e1

MQRankSum
type: SiteQuality
SIO_000300: -5.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.379999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.19e0

QD
type: SiteQuality
SIO_000300: 1.56e1

DP
type: SiteQuality
SIO_000300: 1.562085e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1429
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5823
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1914
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 4.810996563573883e-4
allele num: 14550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63428
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

DP
type: SiteQuality
SIO_000300: 1.56336e6

QD
type: SiteQuality
SIO_000300: 1.349e1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e-1

FS
type: SiteQuality
SIO_000300: 9.029e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e-1

GenotypeQuality
all individuals: 4833
bin: 9.75e1
variant carriers: 239

GenotypeQuality
all individuals: 1816
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2073
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 624
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variant carriers: 1

GenotypeQuality
all individuals: 1831
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5512
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 6.038647342995169e-4
allele num: 9936
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.370569280343716e-4
allele num: 11172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8290
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.272727272727273e-3
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 187
allele frequency: 2.943213296398892e-3
allele num: 63536
num of homozygotes: 1

South Asian
type: Population
allele count: 36
allele frequency: 2.235469448584203e-3
allele num: 16104
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.150061500615006e-4
allele num: 6504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

QD
type: SiteQuality
SIO_000300: 1.492e1

DP
type: SiteQuality
SIO_000300: 1.555075e6

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

GenotypeQuality
all individuals: 1487
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2371
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variant carriers: 0

GenotypeQuality
all individuals: 1685
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variant carriers: 0

GenotypeQuality
all individuals: 249
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variant carriers: 0

GenotypeQuality
all individuals: 2074
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GenotypeQuality
all individuals: 834
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variant carriers: 0

GenotypeQuality
all individuals: 4610
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27153
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577287066246057e-5
allele num: 63400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.93e0

VQSLOD
type: SiteQuality
SIO_000300: -8.182e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 1.548075e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 2302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5434
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variant carriers: 0

GenotypeQuality
all individuals: 4608
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variant carriers: 2

GenotypeQuality
all individuals: 1813
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2060
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variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.540832049306626e-4
allele num: 6490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16202
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.01440454453236e-4
allele num: 9858
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

QD
type: SiteQuality
SIO_000300: 1.771e1

DP
type: SiteQuality
SIO_000300: 1.552076e6

VQSLOD
type: SiteQuality
SIO_000300: 4.9e-1

GenotypeQuality
all individuals: 219
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 946
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variant carriers: 0

GenotypeQuality
all individuals: 5444
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variant carriers: 0

GenotypeQuality
all individuals: 1397
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variant carriers: 0

GenotypeQuality
all individuals: 1823
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variant carriers: 0

GenotypeQuality
all individuals: 2512
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28723
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11146
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.032933523073795e-4
allele num: 9838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63368
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.848e1

MQRankSum
type: SiteQuality
SIO_000300: -3.67e-1

DP
type: SiteQuality
SIO_000300: 1.554295e6

MQ
type: SiteQuality
SIO_000300: 5.873e1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 4.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 618
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4600
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3584
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1399
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variant carriers: 0

GenotypeQuality
all individuals: 939
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variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.147722622682489e-5
allele num: 63538
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.366e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e0

DP
type: SiteQuality
SIO_000300: 1.563003e6

VQSLOD
type: SiteQuality
SIO_000300: -2.654e0

MQRankSum
type: SiteQuality
SIO_000300: -1.326e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 5.575e1

QD
type: SiteQuality
SIO_000300: 1.74e0

FS
type: SiteQuality
SIO_000300: 1.0646e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e0

GenotypeQuality
all individuals: 2085
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2016
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.018122581958868e-4
allele num: 9822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

MQ
type: SiteQuality
SIO_000300: 5.575e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.07e0

MQRankSum
type: SiteQuality
SIO_000300: -1.326e0

FS
type: SiteQuality
SIO_000300: 1.0646e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.366e0

DP
type: SiteQuality
SIO_000300: 1.563003e6

VQSLOD
type: SiteQuality
SIO_000300: -2.654e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.34e0

QD
type: SiteQuality
SIO_000300: 1.74e0

GenotypeQuality
all individuals: 152
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1968
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4580
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
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variant carriers: 0

GenotypeQuality
all individuals: 2065
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1392
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577635440002524e-5
allele num: 63386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11164
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.98223e2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.19e0

DP
type: SiteQuality
SIO_000300: 1.566131e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e0

MQ
type: SiteQuality
SIO_000300: 5.867e1

MQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

QD
type: SiteQuality
SIO_000300: 1.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.84e2

GenotypeQuality
all individuals: 5487
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 833
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4595
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variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571981010469394e-5
allele num: 63614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.871e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.76e0

FS
type: SiteQuality
SIO_000300: 7.5495e1

VQSLOD
type: SiteQuality
SIO_000300: -9.256e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.698e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.666e0

DP
type: SiteQuality
SIO_000300: 1.568335e6

GenotypeQuality
all individuals: 666
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1187
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 884
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563428285544542e-5
allele num: 63962
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11218
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.590748e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

VQSLOD
type: SiteQuality
SIO_000300: -4.013e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.899e1

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

FS
type: SiteQuality
SIO_000300: 3.455e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e-1

QD
type: SiteQuality
SIO_000300: 2.23e0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
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variant carriers: 0

GenotypeQuality
all individuals: 4588
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.527650473571647e-4
allele num: 6546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16398
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.06e-1

FS
type: SiteQuality
SIO_000300: 1.378e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.93e-1

DP
type: SiteQuality
SIO_000300: 1.646963e6

QD
type: SiteQuality
SIO_000300: 1.08e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.908e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4587
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variant carriers: 1

GenotypeQuality
all individuals: 1897
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531581204435459e-5
allele num: 65292
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: -1.368e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.647e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e-1

FS
type: SiteQuality
SIO_000300: 8.33e-1

DP
type: SiteQuality
SIO_000300: 1.650395e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.820000000000001e-1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4592
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 1
allele frequency: 1.163873370577281e-4
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.015228426395939e-4
allele num: 9850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

FS
type: SiteQuality
SIO_000300: 1.0019e1

QD
type: SiteQuality
SIO_000300: 1.395e1

MQRankSum
type: SiteQuality
SIO_000300: 4.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.590000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.670427e6

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41654
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variant carriers: 0

GenotypeQuality
all individuals: 1903
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.321801718133271e-4
allele num: 8614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

QD
type: SiteQuality
SIO_000300: 1.392e1

FS
type: SiteQuality
SIO_000300: 7.417e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.674106e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.392e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 7.417e0

VQSLOD
type: SiteQuality
SIO_000300: 4.72e-1

DP
type: SiteQuality
SIO_000300: 1.674106e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.99e-1

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1911
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variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.738525730180807e-4
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -5.48e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

VQSLOD
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

FS
type: SiteQuality
SIO_000300: 2.827e0

DP
type: SiteQuality
SIO_000300: 1.678493e6

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6265
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503668952243474e-5
allele num: 66504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.397e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.552e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.31e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.680669e6

MQRankSum
type: SiteQuality
SIO_000300: 2.74e-1

QD
type: SiteQuality
SIO_000300: 1.62e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.736111111111111e-4
allele num: 11520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9996
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.802e0

FS
type: SiteQuality
SIO_000300: 3.788e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 1.681593e6

MQ
type: SiteQuality
SIO_000300: 5.955e1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2176
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.972078181092939e-5
allele num: 10028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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QD
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.156336725254394e-4
allele num: 8648
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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ReadPosRankSum
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DP
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MQ
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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South Asian
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European (Non-Finnish)
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allele num: 66566
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Other
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East Asian
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
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Other
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num of homozygotes: 0

Latino
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allele frequency: 8.673026886383348e-5
allele num: 11530
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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QD
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66522
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African
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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ClippingRankSum
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SIO_000300: 3.07e-1

BaseQRankSum
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DP
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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SIO_000300: 4.207e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele num: 66506
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Other
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African
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DP
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ClippingRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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QD
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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African
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East Asian
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Other
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VQSLOD
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QD
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MQRankSum
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ReadPosRankSum
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FS
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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European (Finnish)
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South Asian
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MQRankSum
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ReadPosRankSum
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QD
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Latino
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South Asian
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European (Finnish)
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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Latino
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African
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South Asian
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ReadPosRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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DP
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36973
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.742787200559538e-5
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65146
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9722
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.41e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

DP
type: SiteQuality
SIO_000300: 1.61361e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e-1

FS
type: SiteQuality
SIO_000300: 2.366e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.363e0

QD
type: SiteQuality
SIO_000300: 1.075e1

VQSLOD
type: SiteQuality
SIO_000300: -7.651e-1

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.683087986723623e-5
allele num: 65078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9712
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.268e0

DP
type: SiteQuality
SIO_000300: 1.610945e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

QD
type: SiteQuality
SIO_000300: 1.3e1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.636203866432338e-4
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12728
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.224e1

VQSLOD
type: SiteQuality
SIO_000300: 9.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.94e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

FS
type: SiteQuality
SIO_000300: 2.693e0

DP
type: SiteQuality
SIO_000300: 1.589641e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5021
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variant carriers: 0

GenotypeQuality
all individuals: 4586
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 8.787346221441125e-5
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12700
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -1.966e0

DP
type: SiteQuality
SIO_000300: 1.589757e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

QD
type: SiteQuality
SIO_000300: 3.156e1

GenotypeQuality
all individuals: 138
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 33825
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.556323341737479e-4
allele num: 64254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.571575e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

QD
type: SiteQuality
SIO_000300: 1.347e1

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5428
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4593
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variant carriers: 1

GenotypeQuality
all individuals: 1833
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9630
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12258
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.812125484666901e-5
allele num: 11348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.571575e6

QD
type: SiteQuality
SIO_000300: 1.347e1

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.3e-2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 564
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variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.151492231571649e-5
allele num: 63462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11068
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

FS
type: SiteQuality
SIO_000300: 8.071999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.28e1

DP
type: SiteQuality
SIO_000300: 1.515402e6

MQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.89521437466643e-5
allele num: 11242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63314
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -9.77e-1

DP
type: SiteQuality
SIO_000300: 1.504068e6

QD
type: SiteQuality
SIO_000300: 1.073e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.042e0

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.789e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.219e0

VQSLOD
type: SiteQuality
SIO_000300: -2.031e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1376
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63286
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.793863854266539e-4
allele num: 8344
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.225e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.088e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.07e-1

DP
type: SiteQuality
SIO_000300: 1.496698e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1637
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11224
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.050199537912203e-4
allele num: 9522
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 1.131221719457014e-3
allele num: 10608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585288522511097e-5
allele num: 63080
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.83e-1

DP
type: SiteQuality
SIO_000300: 1.473495e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.14e-1

QD
type: SiteQuality
SIO_000300: 1.506e1

FS
type: SiteQuality
SIO_000300: 1.415e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

GenotypeQuality
all individuals: 923
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4577
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 821
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58609313538891e-5
allele num: 63048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.34e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.504e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

VQSLOD
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 1.471628e6

GenotypeQuality
all individuals: 5486
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4395
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variant carriers: 0

GenotypeQuality
all individuals: 911
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62666
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.975503753457131e-4
allele num: 10124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

DP
type: SiteQuality
SIO_000300: 1.426257e6

VQSLOD
type: SiteQuality
SIO_000300: 9.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.62e-1

QD
type: SiteQuality
SIO_000300: 4.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.926e1

MQRankSum
type: SiteQuality
SIO_000300: -2.079e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.62e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.857906242409522e-4
allele num: 8234
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.425894e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.984e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 7.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.738e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2490
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1749
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variant carriers: 0

GenotypeQuality
all individuals: 813
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62252
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.058201058201058e-4
allele num: 9450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.91e0

DP
type: SiteQuality
SIO_000300: 1.41047e6

MQRankSum
type: SiteQuality
SIO_000300: -1.453e0

MQ
type: SiteQuality
SIO_000300: 5.465e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.98e-1

FS
type: SiteQuality
SIO_000300: 2.342e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.054e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.128e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.73e-1

GenotypeQuality
all individuals: 516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 391
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1026
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.748906386701662e-5
allele num: 11430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

DP
type: SiteQuality
SIO_000300: 1.762128e6

VQSLOD
type: SiteQuality
SIO_000300: -2.788e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.31e-1

FS
type: SiteQuality
SIO_000300: 5.584e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.558e0

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

GenotypeQuality
all individuals: 517
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
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variant carriers: 0

GenotypeQuality
all individuals: 92
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35579
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variant carriers: 0

GenotypeQuality
all individuals: 3737
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12022
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.699321047526673e-5
allele num: 10310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.075314450902605e-5
allele num: 65034
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.81e0

DP
type: SiteQuality
SIO_000300: 1.763506e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 1.06e0

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

QD
type: SiteQuality
SIO_000300: 1.608e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 310
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.535815210713847e-5
allele num: 65112
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12196
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 4.454e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

DP
type: SiteQuality
SIO_000300: 1.769537e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

QD
type: SiteQuality
SIO_000300: 1.376e1

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
all individuals: 9326
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.227596366314756e-4
allele num: 65168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.748251748251748e-4
allele num: 11440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12266
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

DP
type: SiteQuality
SIO_000300: 1.772468e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.471e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.99e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.96e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.140000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.05e-1

DP
type: SiteQuality
SIO_000300: 1.77315e6

MQRankSum
type: SiteQuality
SIO_000300: 1.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.465e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.33e-1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 335
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GenotypeQuality
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GenotypeQuality
all individuals: 1942
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GenotypeQuality
all individuals: 1024
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GenotypeQuality
all individuals: 3720
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GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522579859313621e-5
allele num: 65678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.798804e6

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.177e0

QD
type: SiteQuality
SIO_000300: 1.758e1

VQSLOD
type: SiteQuality
SIO_000300: -4.116e-1

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39778
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.17e-1

FS
type: SiteQuality
SIO_000300: 3.036e0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

QD
type: SiteQuality
SIO_000300: 1.434e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.824491e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3718
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1032
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.921e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.65e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

QD
type: SiteQuality
SIO_000300: 1.527e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.828894e6

GenotypeQuality
all individuals: 40219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3717
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504573904670197e-5
allele num: 66464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.24e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.71e-1

DP
type: SiteQuality
SIO_000300: 1.833311e6

MQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

FS
type: SiteQuality
SIO_000300: 7.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.088e0

QD
type: SiteQuality
SIO_000300: 9.74e0