5-179228845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228845
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228845
    reference: chr 5
allele count: 7
allele frequency: 6.171424541110504e-5
allele num: 113426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.267C>T
  hgvsp: ENST00000520918.1:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.484C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.272C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.591C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.716C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.267C>T
  hgvsp: ENST00000337755.5:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-214C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.193C>T
  hgvsp: ENST00000523329.1:c.193C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.222C>T
  hgvsp: ENST00000292591.7:c.222C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.65C>T
  hgvsp: ENST00000519836.1:c.65C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10207
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41404
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala89Ala
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/5-179228857-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228857
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228857
    reference: chr 5
allele count: 1
allele frequency: 8.56091088091773e-6
allele num: 116810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.472G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.255G>T
  hgvsp: ENSP00000430376.1:p.Glu85Asp
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.704G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.181G>T
  hgvsp: ENSP00000430964.1:p.Glu61Asp
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.255G>T
  hgvsp: ENSP00000338487.5:p.Glu85Asp
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.53G>T
  hgvsp: ENSP00000430721.1:p.Glu18Asp
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.210G>T
  hgvsp: ENSP00000292591.7:p.Glu70Asp
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.579G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.260G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-226G>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu85Asp
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

5-179228860-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228860
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228860
    reference: chr 5
allele count: 1
allele frequency: 8.522388314101144e-6
allele num: 117338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.469C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.576C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.257C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.50C>T
  hgvsp: ENST00000519836.1:c.50C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.252C>T
  hgvsp: ENST00000520918.1:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.178C>T
  hgvsp: ENST00000523329.1:c.178C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.252C>T
  hgvsp: ENST00000337755.5:c.252C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.207C>T
  hgvsp: ENST00000292591.7:c.207C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-229C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.701C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3567
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp84Asp
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

5-179228871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228871
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228871
    reference: chr 5
allele count: 1
allele frequency: 8.434263351438885e-6
allele num: 118564
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.241C>T
  hgvsp: ENST00000337755.5:c.241C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.196C>T
  hgvsp: ENST00000292591.7:c.196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.565C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.39C>T
  hgvsp: ENST00000519836.1:c.39C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.458C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-240C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.167C>T
  hgvsp: ENST00000523329.1:c.167C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.690C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.241C>T
  hgvsp: ENST00000520918.1:c.241C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.246C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu81Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

5-179228880-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228880
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228880
    reference: chr 5
allele count: 4
allele frequency: 3.357451023183199e-5
allele num: 119138
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.232G>A
  hgvsp: ENSP00000338487.5:p.Glu78Lys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.187G>A
  hgvsp: ENSP00000292591.7:p.Glu63Lys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.30G>A
  hgvsp: ENSP00000430721.1:p.Glu11Lys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.232G>A
  hgvsp: ENSP00000430376.1:p.Glu78Lys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.237G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-249G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.158G>A
  hgvsp: ENSP00000430964.1:p.Glu54Lys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.681G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.449G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.556G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu78Lys
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

5-179228883-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228883
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228883
    reference: chr 5
allele count: 1
allele frequency: 8.380122349786308e-6
allele num: 119330
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.678A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.553A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-252A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.184A>G
  hgvsp: ENSP00000292591.7:p.Lys62Glu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.234A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.27A>G
  hgvsp: ENSP00000430721.1:p.Lys10Glu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.155A>G
  hgvsp: ENSP00000430964.1:p.Lys53Glu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.229A>G
  hgvsp: ENSP00000338487.5:p.Lys77Glu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.229A>G
  hgvsp: ENSP00000430376.1:p.Lys77Glu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.446A>G
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 938
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Lys77Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-179228884-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228884
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228884
    reference: chr 5
allele count: 3
allele frequency: 2.513446941135073e-5
allele num: 119358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.552C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.183C>T
  hgvsp: ENST00000292591.7:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.228C>T
  hgvsp: ENST00000520918.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.445C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.26C>T
  hgvsp: ENST00000519836.1:c.26C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.154C>T
  hgvsp: ENST00000523329.1:c.154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.228C>T
  hgvsp: ENST00000337755.5:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.677C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-253C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.233C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Ser76Ser
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

5-179228889-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228889
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228889
    reference: chr 5
allele count: 1
allele frequency: 8.36344172353807e-6
allele num: 119568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-258C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.149C>T
  hgvsp: ENSP00000430964.1:p.Arg51Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.223C>T
  hgvsp: ENSP00000338487.5:p.Arg75Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.223C>T
  hgvsp: ENSP00000430376.1:p.Arg75Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.440C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.547C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.178C>T
  hgvsp: ENSP00000292591.7:p.Arg60Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.228C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.21C>T
  hgvsp: ENSP00000430721.1:p.Arg8Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.672C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12370
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg75Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

5-179228891-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228891
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228891
    reference: chr 5
allele count: 191
allele frequency: 1.59616252444385e-3
allele num: 119662
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.545A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.176A>G
  hgvsp: ENSP00000292591.7:p.Lys59Arg
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.670A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-260A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.438A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.226A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.221A>G
  hgvsp: ENSP00000430376.1:p.Lys74Arg
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.19A>G
  hgvsp: ENSP00000430721.1:p.Lys7Arg
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.221A>G
  hgvsp: ENSP00000338487.5:p.Lys74Arg
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.147A>G
  hgvsp: ENSP00000430964.1:p.Lys50Arg
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12366
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42325
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2022
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Lys74Arg
num of homozygotes: 3
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

5-179228893-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228893
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228893
    reference: chr 5
allele count: 2361
allele frequency: 1.970784641068447e-2
allele num: 119800
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.219C>G
  hgvsp: ENST00000337755.5:c.219C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.219C>G
  hgvsp: ENST00000520918.1:c.219C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.17C>G
  hgvsp: ENST00000519836.1:c.17C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.668C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.436C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.145C>G
  hgvsp: ENST00000523329.1:c.145C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.174C>G
  hgvsp: ENST00000292591.7:c.174C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-262C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.224C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.543C>G
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 4.25e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.25e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 12047
  bin: 2.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 179
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 164
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.25e1
  variant carriers: 187
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 40879
  bin: 2.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Leu73Leu
num of homozygotes: 56
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

5-179228895-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228895
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228895
    reference: chr 5
allele count: 1
allele frequency: 8.34432002136146e-6
allele num: 119842
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.541C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.434C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.217C>T
  hgvsp: ENSP00000430376.1:p.Leu73Phe
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.143C>T
  hgvsp: ENSP00000430964.1:p.Leu49Phe
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.15C>T
  hgvsp: ENSP00000430721.1:p.Leu6Phe
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.172C>T
  hgvsp: ENSP00000292591.7:p.Leu58Phe
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-264C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.222C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.217C>T
  hgvsp: ENSP00000338487.5:p.Leu73Phe
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.666C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40917
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6287
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu73Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

5-179228897-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228897
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228897
    reference: chr 5
allele count: 2
allele frequency: 1.668084538524412e-5
allele num: 119898
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.170G>C
  hgvsp: ENSP00000292591.7:p.Ser57Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.220G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.539G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.141G>C
  hgvsp: ENSP00000430964.1:p.Ser48Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.664G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.215G>C
  hgvsp: ENSP00000338487.5:p.Ser72Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.215G>C
  hgvsp: ENSP00000430376.1:p.Ser72Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430721
  ensembl transcript: ENST00000519836
  gene symbol: MGAT4B
  hgvsc: ENST00000519836.1:c.13G>C
  hgvsp: ENSP00000430721.1:p.Ser5Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-266G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.432G>C
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12409
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser72Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

5-179228913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228913
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228913
    reference: chr 5
allele count: 6
allele frequency: 4.993591557501207e-5
allele num: 120154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-282G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.125G>A
  hgvsp: ENSP00000430964.1:p.Ala43Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.204G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.154G>A
  hgvsp: ENSP00000292591.7:p.Ala52Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.523G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.199G>A
  hgvsp: ENSP00000338487.5:p.Ala67Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.648G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.199G>A
  hgvsp: ENSP00000430376.1:p.Ala67Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.416G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala67Thr
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

5-179228914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228914
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228914
    reference: chr 5
allele count: 2
allele frequency: 1.664253499092982e-5
allele num: 120174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.203C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.124C>T
  hgvsp: ENST00000523329.1:c.124C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.415C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.522C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-283C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.647C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.153C>T
  hgvsp: ENST00000292591.7:c.153C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.198C>T
  hgvsp: ENST00000520918.1:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.198C>T
  hgvsp: ENST00000337755.5:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12536
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His66His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

5-179228917-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228917
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228917
    reference: chr 5
allele count: 5
allele frequency: 4.160149099743735e-5
allele num: 120188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.519G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-286G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.150G>A
  hgvsp: ENST00000292591.7:c.150G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.644G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.195G>A
  hgvsp: ENST00000337755.5:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.200G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.121G>A
  hgvsp: ENST00000523329.1:c.121G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.412G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.195G>A
  hgvsp: ENST00000520918.1:c.195G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu65Leu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

5-179228921-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228921
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228921
    reference: chr 5
allele count: 1
allele frequency: 8.319329129299013e-6
allele num: 120202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.146G>A
  hgvsp: ENSP00000292591.7:p.Arg49Gln
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.196G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.191G>A
  hgvsp: ENSP00000430376.1:p.Arg64Gln
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.191G>A
  hgvsp: ENSP00000338487.5:p.Arg64Gln
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.117G>A
  hgvsp: ENSP00000430964.1:p.Arg40Gln
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-290G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.515G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.640G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.408G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40750
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg64Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

5-179228922-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228922
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228922
    reference: chr 5
allele count: 1
allele frequency: 8.319744417451495e-6
allele num: 120196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.145C>T
  hgvsp: ENSP00000292591.7:p.Arg49Trp
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.190C>T
  hgvsp: ENSP00000430376.1:p.Arg64Trp
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-291C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.190C>T
  hgvsp: ENSP00000338487.5:p.Arg64Trp
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.407C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.116C>T
  hgvsp: ENSP00000430964.1:p.Arg40Trp
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.195C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.639C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.514C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg64Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

5-179228926-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228926
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228926
    reference: chr 5
allele count: 19
allele frequency: 1.580251842240964e-4
allele num: 120234
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.186C>T
  hgvsp: ENST00000520918.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.141C>T
  hgvsp: ENST00000292591.7:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.403C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.186C>T
  hgvsp: ENST00000337755.5:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.635C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.112C>T
  hgvsp: ENST00000523329.1:c.112C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-295C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.510C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.191C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40709
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg62Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-179228926-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228926
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228926
    reference: chr 5
allele count: 48
allele frequency: 3.992215180398224e-4
allele num: 120234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.635C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.112C>G
  hgvsp: ENST00000523329.1:c.112C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.186C>G
  hgvsp: ENST00000520918.1:c.186C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.510C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.186C>G
  hgvsp: ENST00000337755.5:c.186C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.403C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.191C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.141C>G
  hgvsp: ENST00000292591.7:c.141C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-295C>G
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg62Arg
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

5-179228931-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228931
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228931
    reference: chr 5
allele count: 3
allele frequency: 2.494553558064892e-5
allele num: 120262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.136C>A
  hgvsp: ENSP00000292591.7:p.Leu46Met
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.181C>A
  hgvsp: ENSP00000338487.5:p.Leu61Met
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.181C>A
  hgvsp: ENSP00000430376.1:p.Leu61Met
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.630C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-300C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.107C>A
  hgvsp: ENSP00000430964.1:p.Leu37Met
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.398C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.505C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.186C>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2027
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu61Met
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

5-179228932-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228932
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228932
    reference: chr 5
allele count: 2
allele frequency: 1.663091020971578e-5
allele num: 120258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.135G>A
  hgvsp: ENST00000292591.7:c.135G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.397G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.106G>A
  hgvsp: ENST00000523329.1:c.106G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.180G>A
  hgvsp: ENST00000337755.5:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.629G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-301G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.504G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.185G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.180G>A
  hgvsp: ENST00000520918.1:c.180G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala60Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

5-179228938-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228938
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228938
    reference: chr 5
allele count: 1
allele frequency: 8.312275568559649e-6
allele num: 120304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.129C>A
  hgvsp: ENSP00000292591.7:p.Phe43Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.623C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.174C>A
  hgvsp: ENSP00000430376.1:p.Phe58Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.174C>A
  hgvsp: ENSP00000338487.5:p.Phe58Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.100C>A
  hgvsp: ENSP00000430964.1:p.Phe34Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.498C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-307C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.179C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.391C>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12649
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Phe58Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

5-179228945-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228945
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228945
    reference: chr 5
allele count: 1
allele frequency: 8.311999202048076e-6
allele num: 120308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.93G>A
  hgvsp: ENSP00000430964.1:p.Arg32Gln
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-314G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.167G>A
  hgvsp: ENSP00000338487.5:p.Arg56Gln
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.122G>A
  hgvsp: ENSP00000292591.7:p.Arg41Gln
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.384G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.616G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.167G>A
  hgvsp: ENSP00000430376.1:p.Arg56Gln
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.172G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.491G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg56Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

5-179228955-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228955
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228955
    reference: chr 5
allele count: 2
allele frequency: 1.662510390689942e-5
allele num: 120300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.157G>A
  hgvsp: ENSP00000430376.1:p.Val53Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.112G>A
  hgvsp: ENSP00000292591.7:p.Val38Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-324G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.374G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.162G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.83G>A
  hgvsp: ENSP00000430964.1:p.Val29Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.481G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.157G>A
  hgvsp: ENSP00000338487.5:p.Val53Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.606G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2339
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val53Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-179228958-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228958
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228958
    reference: chr 5
allele count: 1
allele frequency: 8.309788931361144e-6
allele num: 120340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.159G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.603G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.154G>A
  hgvsp: ENSP00000430376.1:p.Asp52Asn
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.154G>A
  hgvsp: ENSP00000338487.5:p.Asp52Asn
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.109G>A
  hgvsp: ENSP00000292591.7:p.Asp37Asn
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-327G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.80G>A
  hgvsp: ENSP00000430964.1:p.Asp28Asn
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.371G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.478G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44779
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp52Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/5-179228961-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228961
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228961
    reference: chr 5
allele count: 1
allele frequency: 8.310479514667997e-6
allele num: 120330
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.106G>T
  hgvsp: ENSP00000292591.7:p.Val36Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.151G>T
  hgvsp: ENSP00000430376.1:p.Val51Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.600G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.77G>T
  hgvsp: ENSP00000430964.1:p.Val27Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.475G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.151G>T
  hgvsp: ENSP00000338487.5:p.Val51Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-330G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.368G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.156G>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val51Leu
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

5-179228961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228961
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228961
    reference: chr 5
allele count: 1
allele frequency: 8.310479514667997e-6
allele num: 120330
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.368G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.77G>A
  hgvsp: ENSP00000430964.1:p.Val27Met
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.475G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.600G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.151G>A
  hgvsp: ENSP00000430376.1:p.Val51Met
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.106G>A
  hgvsp: ENSP00000292591.7:p.Val36Met
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.156G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-330G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.151G>A
  hgvsp: ENSP00000338487.5:p.Val51Met
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val51Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

5-179228962-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228962
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228962
    reference: chr 5
allele count: 1
allele frequency: 8.310341388824253e-6
allele num: 120332
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.150T>C
  hgvsp: ENST00000520918.1:c.150T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.474T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.367T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.155T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.105T>C
  hgvsp: ENST00000292591.7:c.105T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-331T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.76T>C
  hgvsp: ENST00000523329.1:c.76T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.150T>C
  hgvsp: ENST00000337755.5:c.150T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.599T>C
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val50Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

5-179228964-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228964
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228964
    reference: chr 5
allele count: 4
allele frequency: 3.324357567900003e-5
allele num: 120324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.148G>C
  hgvsp: ENSP00000430376.1:p.Val50Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.148G>C
  hgvsp: ENSP00000338487.5:p.Val50Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.103G>C
  hgvsp: ENSP00000292591.7:p.Val35Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.74G>C
  hgvsp: ENSP00000430964.1:p.Val26Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.365G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-333G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.472G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.153G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.597G>C
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val50Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ

5-179228964-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228964
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228964
    reference: chr 5
allele count: 1
allele frequency: 8.310893919750009e-6
allele num: 120324
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-333G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.103G>A
  hgvsp: ENSP00000292591.7:p.Val35Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.365G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.74G>A
  hgvsp: ENSP00000430964.1:p.Val26Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.148G>A
  hgvsp: ENSP00000338487.5:p.Val50Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.153G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.148G>A
  hgvsp: ENSP00000430376.1:p.Val50Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.472G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.597G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6306
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44590
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val50Ile
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

5-179228967-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228967
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228967
    reference: chr 5
allele count: 1
allele frequency: 8.310755780130645e-6
allele num: 120326
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.145G>A
  hgvsp: ENSP00000430376.1:p.Asp49Asn
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.469G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.594G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.145G>A
  hgvsp: ENSP00000338487.5:p.Asp49Asn
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-336G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.71G>A
  hgvsp: ENSP00000430964.1:p.Asp25Asn
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.362G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.100G>A
  hgvsp: ENSP00000292591.7:p.Asp34Asn
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.150G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12620
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44625
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp49Asn
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

5-179228968-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228968
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228968
    reference: chr 5
allele count: 1
allele frequency: 8.312275568559649e-6
allele num: 120304
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.144C>T
  hgvsp: ENST00000337755.5:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.99C>T
  hgvsp: ENST00000292591.7:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.144C>T
  hgvsp: ENST00000520918.1:c.144C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.361C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.468C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.593C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.70C>T
  hgvsp: ENST00000523329.1:c.70C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.149C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-337C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6303
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 2.75e1
  variant carriers: 0
hgvs: n.593C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

5-179228972-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228972
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228972
    reference: chr 5
allele count: 1
allele frequency: 8.311861025683651e-6
allele num: 120310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-3C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.140C>T
  hgvsp: ENSP00000338487.5:p.Ala47Val
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-3C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-3C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.140C>T
  hgvsp: ENSP00000430376.1:p.Ala47Val
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-3C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-3C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-3C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-3C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1406
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala47Val
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

5-179228973-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228973
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228973
    reference: chr 5
allele count: 1
allele frequency: 8.311861025683651e-6
allele num: 120310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-4G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-4G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-4G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-4G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.139G>A
  hgvsp: ENSP00000338487.5:p.Ala47Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-4G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.139G>A
  hgvsp: ENSP00000430376.1:p.Ala47Thr
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-4G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-4G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44666
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala47Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

5-179228975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228975
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228975
    reference: chr 5
allele count: 1
allele frequency: 8.310755780130645e-6
allele num: 120326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-6C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-6C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.137C>T
  hgvsp: ENSP00000430376.1:p.Pro46Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.137C>T
  hgvsp: ENSP00000338487.5:p.Pro46Leu
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-6C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-6C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-6C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-6C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-6C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro46Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

5-179228976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228976
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228976
    reference: chr 5
allele count: 1
allele frequency: 8.311032063961702e-6
allele num: 120322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-7C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-7C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-7C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.136C>T
  hgvsp: ENSP00000430376.1:p.Pro46Ser
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-7C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-7C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-7C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.136C>T
  hgvsp: ENSP00000338487.5:p.Pro46Ser
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-7C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro46Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

5-179228981-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228981
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228980
    reference: chr 5
allele count: 1
allele frequency: 8.312966565248474e-6
allele num: 120294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-13delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-13delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.130delC
  hgvsp: ENSP00000430376.1:p.Leu44TyrfsTer65
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-13delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-13delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.130delC
  hgvsp: ENSP00000338487.5:p.Leu44TyrfsTer65
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-13delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-13delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-13delC
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40431
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12712
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 524
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu44TyrfsTer65
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: AG
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

5-179228982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228982
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228982
    reference: chr 5
allele count: 1
allele frequency: 8.312275568559649e-6
allele num: 120304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-13C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-13C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-13C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-13C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-13C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-13C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-13C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.130C>T
  hgvsp: ENST00000337755.5:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.130C>T
  hgvsp: ENST00000520918.1:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu44Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

5-179228989-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228989
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228989
    reference: chr 5
allele count: 1
allele frequency: 8.312275568559649e-6
allele num: 120304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-20G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-20G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-20G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.123G>A
  hgvsp: ENST00000520918.1:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.123G>A
  hgvsp: ENST00000337755.5:c.123G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-20G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-20G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-20G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-20G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr41Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

5-179228992-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228992
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228992
    reference: chr 5
allele count: 1
allele frequency: 8.314901967305805e-6
allele num: 120266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-23G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-23G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.120G>A
  hgvsp: ENST00000520918.1:c.120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-23G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-23G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.120G>A
  hgvsp: ENST00000337755.5:c.120G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-23G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-23G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-23G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12775
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val40Val
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

5-179228995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228995
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228995
    reference: chr 5
allele count: 2
allele frequency: 1.663091020971578e-5
allele num: 120258
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.117C>T
  hgvsp: ENST00000337755.5:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-26C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.117C>T
  hgvsp: ENST00000520918.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-26C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-26C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-26C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-26C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-26C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-26C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu39Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

5-179228995-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179228995
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179228995
    reference: chr 5
allele count: 16
allele frequency: 1.330472816777262e-4
allele num: 120258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-26C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-26C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-26C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-26C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.117C>G
  hgvsp: ENST00000337755.5:c.117C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.117C>G
  hgvsp: ENST00000520918.1:c.117C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-26C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-26C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-26C>G
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu39Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS

5-179229002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229002
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229002
    reference: chr 5
allele count: 1
allele frequency: 8.321821480285606e-6
allele num: 120166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-33G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-33G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.110G>A
  hgvsp: ENSP00000430376.1:p.Arg37His
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.110G>A
  hgvsp: ENSP00000338487.5:p.Arg37His
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-33G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-33G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-33G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-33G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-33G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12745
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6349
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg37His
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

5-179229003-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229003
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229003
    reference: chr 5
allele count: 2
allele frequency: 1.66441970007157e-5
allele num: 120162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-34C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-34C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-34C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-34C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-34C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.109C>T
  hgvsp: ENSP00000430376.1:p.Arg37Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.109C>T
  hgvsp: ENSP00000338487.5:p.Arg37Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-34C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-34C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg37Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

5-179229003-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229003
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229003
    reference: chr 5
allele count: 1
allele frequency: 8.32209850035785e-6
allele num: 120162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-34C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.109C>A
  hgvsp: ENSP00000430376.1:p.Arg37Ser
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-34C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-34C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.109C>A
  hgvsp: ENSP00000338487.5:p.Arg37Ser
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-34C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-34C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-34C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-34C>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg37Ser
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum

5-179229010-AGCC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229010
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229007
    reference: chr 5
allele count: 1
allele frequency: 8.336390009670212e-6
allele num: 119956
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-44_-338-42delGGC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.99_101delGGC
  hgvsp: ENSP00000338487.5:p.Ala34del
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-44_467-42delGGC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-44_69-42delGGC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-44_592-42delGGC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-44_360-42delGGC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.99_101delGGC
  hgvsp: ENSP00000430376.1:p.Ala34del
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-44_98-42delGGC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-44_148-42delGGC
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala34del
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: AGCC
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

5-179229014-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229014
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229014
    reference: chr 5
allele count: 4
allele frequency: 3.34213428695565e-5
allele num: 119684
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-45T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.98T>C
  hgvsp: ENSP00000430376.1:p.Val33Ala
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-45T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-45T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-45T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-45T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-45T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-45T>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.98T>C
  hgvsp: ENSP00000338487.5:p.Val33Ala
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39987
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val33Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-179229019-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229019
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229018
    reference: chr 5
allele count: 1
allele frequency: 8.366800535475235e-6
allele num: 119520
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-51delG
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-51delG
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.92delG
  hgvsp: ENSP00000338487.5:p.Arg31LeufsTer5
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-51delG
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-51delG
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-51delG
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.92delG
  hgvsp: ENSP00000430376.1:p.Arg31LeufsTer5
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-51delG
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-51delG
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12669
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2351
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg31LeufsTer5
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: AC
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

5-179229020-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229020
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229020
    reference: chr 5
allele count: 2
allele frequency: 1.675097993232604e-5
allele num: 119396
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.92G>A
  hgvsp: ENSP00000338487.5:p.Arg31His
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-51G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-51G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.92G>A
  hgvsp: ENSP00000430376.1:p.Arg31His
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-51G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-51G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-51G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-51G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-51G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1175
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg31His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum

5-179229020-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229020
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229019
    reference: chr 5
allele count: 1
allele frequency: 8.37548996616302e-6
allele num: 119396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-52delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-52delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-52delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.91delC
  hgvsp: ENSP00000430376.1:p.Arg31ValfsTer5
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-52delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-52delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.91delC
  hgvsp: ENSP00000338487.5:p.Arg31ValfsTer5
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-52delC
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-52delC
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4198
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg31ValfsTer5
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: CG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-179229021-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229021
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229021
    reference: chr 5
allele count: 5
allele frequency: 4.186763129689175e-5
allele num: 119424
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-52C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-52C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-52C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-52C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.91C>G
  hgvsp: ENSP00000338487.5:p.Arg31Gly
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-52C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.91C>G
  hgvsp: ENSP00000430376.1:p.Arg31Gly
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-52C>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-52C>G
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg31Gly
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

5-179229021-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229021
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229021
    reference: chr 5
allele count: 2
allele frequency: 1.67470525187567e-5
allele num: 119424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.91C>T
  hgvsp: ENSP00000430376.1:p.Arg31Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.91C>T
  hgvsp: ENSP00000338487.5:p.Arg31Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-52C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-52C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-52C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-52C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-52C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-52C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-52C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39824
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44079
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg31Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

5-179229022-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229022
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229022
    reference: chr 5
allele count: 5
allele frequency: 4.189288826328842e-5
allele num: 119352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-53C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-53C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-53C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-53C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.90C>A
  hgvsp: ENST00000520918.1:c.90C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.90C>A
  hgvsp: ENST00000337755.5:c.90C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-53C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-53C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-53C>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12624
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39754
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2347
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala30Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

5-179229025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229025
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229025
    reference: chr 5
allele count: 2
allele frequency: 1.677486454296882e-5
allele num: 119226
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.87G>A
  hgvsp: ENST00000337755.5:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.87G>A
  hgvsp: ENST00000520918.1:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-56G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-56G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-56G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-56G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-56G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-56G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-56G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly29Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

5-179229027-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229027
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229027
    reference: chr 5
allele count: 1
allele frequency: 8.399973120086016e-6
allele num: 119048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-58G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.85G>A
  hgvsp: ENSP00000430376.1:p.Gly29Arg
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-58G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-58G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.85G>A
  hgvsp: ENSP00000338487.5:p.Gly29Arg
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-58G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-58G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-58G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-58G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly29Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

5-179229028-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229028
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229028
    reference: chr 5
allele count: 2
allele frequency: 1.680248676804167e-5
allele num: 119030
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.84A>T
  hgvsp: ENST00000337755.5:c.84A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-59A>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-59A>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-59A>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-59A>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-59A>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-59A>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.84A>T
  hgvsp: ENST00000520918.1:c.84A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-59A>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1588
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly28Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/5-179229029-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229029
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229029
    reference: chr 5
allele count: 2
allele frequency: 1.68321831341525e-5
allele num: 118820
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-60G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-60G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-60G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-60G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.83G>T
  hgvsp: ENSP00000338487.5:p.Gly28Val
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-60G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.83G>T
  hgvsp: ENSP00000430376.1:p.Gly28Val
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-60G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-60G>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39417
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43367
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly28Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/5-179229031-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229031
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229031
    reference: chr 5
allele count: 1
allele frequency: 8.415666604951778e-6
allele num: 118826
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.81T>G
  hgvsp: ENST00000337755.5:c.81T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-62T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-62T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.81T>G
  hgvsp: ENST00000520918.1:c.81T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-62T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-62T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-62T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-62T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-62T>G
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1760
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr27Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-179229032-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229032
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229032
    reference: chr 5
allele count: 1751
allele frequency: 1.475769068689423e-2
allele num: 118650
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.80C>T
  hgvsp: ENSP00000338487.5:p.Thr27Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-63C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.80C>T
  hgvsp: ENSP00000430376.1:p.Thr27Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-63C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-63C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-63C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-63C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-63C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-63C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 38218
  bin: 2.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 12035
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 9.75e1
  variant carriers: 1354
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42138
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2257
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Thr27Ile
num of homozygotes: 23
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-179229033-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229033
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229033
    reference: chr 5
allele count: 1
allele frequency: 8.43127666391245e-6
allele num: 118606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-64A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-64A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.79A>G
  hgvsp: ENSP00000338487.5:p.Thr27Ala
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-64A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-64A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.79A>G
  hgvsp: ENSP00000430376.1:p.Thr27Ala
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-64A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-64A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-64A>G
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1913
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42582
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr27Ala
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/5-179229039-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229039
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229039
    reference: chr 5
allele count: 736
allele frequency: 6.229896732690029e-3
allele num: 118140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-70T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-70T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-70T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-70T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.73T>G
  hgvsp: ENSP00000430376.1:p.Trp25Gly
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.73T>G
  hgvsp: ENSP00000338487.5:p.Trp25Gly
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-70T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-70T>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-70T>G
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4336
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 1.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 12112
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 37606
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 9.75e1
  variant carriers: 487
genotype quality: GenotypeQuality
  all individuals: 6105
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Trp25Gly
num of homozygotes: 18
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

5-179229040-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229040
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229040
    reference: chr 5
allele count: 1
allele frequency: 8.47314014573801e-6
allele num: 118020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.72C>T
  hgvsp: ENST00000520918.1:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-71C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-71C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-71C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-71C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.72C>T
  hgvsp: ENST00000337755.5:c.72C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-71C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-71C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-71C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37584
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg24Arg
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-179229042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229042
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229042
    reference: chr 5
allele count: 2
allele frequency: 1.699726344058606e-5
allele num: 117666
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-73C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-73C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.70C>T
  hgvsp: ENSP00000430376.1:p.Arg24Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-73C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-73C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-73C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.70C>T
  hgvsp: ENSP00000338487.5:p.Arg24Cys
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-73C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-73C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg24Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

5-179229052-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229052
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229052
    reference: chr 5
allele count: 1
allele frequency: 8.574564412127864e-6
allele num: 116624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-83C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-83C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-83C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-83C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-83C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-83C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-83C>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.60C>A
  hgvsp: ENST00000520918.1:c.60C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.60C>A
  hgvsp: ENST00000337755.5:c.60C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11687
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro20Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

5-179229054-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229054
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229054
    reference: chr 5
allele count: 1
allele frequency: 8.588114050154586e-6
allele num: 116440
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-85C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-85C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.58C>T
  hgvsp: ENSP00000430376.1:p.Pro20Ser
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-85C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-85C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.58C>T
  hgvsp: ENSP00000338487.5:p.Pro20Ser
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-85C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-85C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-85C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 36721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11628
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro20Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

5-179229056-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229056
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229056
    reference: chr 5
allele count: 1
allele frequency: 8.620392400262059e-6
allele num: 116004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-87C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-87C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.56C>T
  hgvsp: ENSP00000430376.1:p.Thr19Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-87C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-87C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.56C>T
  hgvsp: ENSP00000338487.5:p.Thr19Ile
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-87C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-87C>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-87C>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4335
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11491
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr19Ile
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: QD

5-179229057-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229057
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229057
    reference: chr 5
allele count: 3
allele frequency: 2.586519062645492e-5
allele num: 115986
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-88A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-88A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-88A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.55A>G
  hgvsp: ENSP00000430376.1:p.Thr19Ala
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-88A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-88A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-88A>G
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.55A>G
  hgvsp: ENSP00000338487.5:p.Thr19Ala
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-88A>G
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36518
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2239
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3681
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr19Ala
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/5-179229061-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229061
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229061
    reference: chr 5
allele count: 5
allele frequency: 4.333807162916479e-5
allele num: 115372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.51G>T
  hgvsp: ENSP00000430376.1:p.Arg17Ser
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-92G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.51G>T
  hgvsp: ENSP00000338487.5:p.Arg17Ser
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-92G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-92G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-92G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-92G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-92G>T
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-92G>T
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11357
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1515
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 9.75e1
  variant carriers: 5
hgvs: p.Arg17Ser
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP

5-179229061-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229061
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229061
    reference: chr 5
allele count: 36
allele frequency: 3.120341157299865e-4
allele num: 115372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-92G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-92G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.51G>A
  hgvsp: ENST00000337755.5:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-92G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-92G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-92G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.51G>A
  hgvsp: ENST00000520918.1:c.51G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-92G>A
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-92G>A
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2024
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3943
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg17Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

5-179229064-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179229064
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179229064
    reference: chr 5
allele count: 2
allele frequency: 1.740734938290947e-5
allele num: 114894
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000519616
  gene symbol: MGAT4B
  hgvsc: ENST00000519616.1:n.360-95G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000518168
  gene symbol: MGAT4B
  hgvsc: ENST00000518168.1:n.467-95G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000427995
  ensembl transcript: ENST00000523108
  gene symbol: MGAT4B
  hgvsc: ENST00000523108.1:c.-338-95G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430964
  ensembl transcript: ENST00000523329
  gene symbol: MGAT4B
  hgvsc: ENST00000523329.1:c.69-95G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000521305
  gene symbol: MGAT4B
  hgvsc: ENST00000521305.1:n.592-95G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000430376
  ensembl transcript: ENST00000520918
  gene symbol: MGAT4B
  hgvsc: ENST00000520918.1:c.48G>C
  hgvsp: ENSP00000430376.1:p.Gln16His
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000292591
  ensembl transcript: ENST00000292591
  gene symbol: MGAT4B
  hgvsc: ENST00000292591.7:c.98-95G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000161013
  ensembl transcript: ENST00000520134
  gene symbol: MGAT4B
  hgvsc: ENST00000520134.1:n.148-95G>C
  variant of: http://identifiers.org/hgnc/7048
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000161013
  ensembl protein: ENSP00000338487
  ensembl transcript: ENST00000337755
  gene symbol: MGAT4B
  hgvsc: ENST00000337755.5:c.48G>C
  hgvsp: ENSP00000338487.5:p.Gln16His
  variant of: http://identifiers.org/hgnc/7048
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln16His
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1099
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42754
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5637
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1959
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 73
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9522
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.475451724767294e-4
allele num: 10958
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.268020559107433e-5
allele num: 15954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62286
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.35e-1

FS
type: SiteQuality
SIO_000300: 2.579e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

QD
type: SiteQuality
SIO_000300: 1.408e1

DP
type: SiteQuality
SIO_000300: 1.330934e6

GenotypeQuality
all individuals: 285
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5987
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2234
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.560695445890689e-5
allele num: 64074
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.394e0

MQRankSum
type: SiteQuality
SIO_000300: -2.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 1.370133e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.262e0

QD
type: SiteQuality
SIO_000300: 1.412e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.56e-1

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44615
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2185
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1988
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6048
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64336
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.833922261484099e-5
allele num: 11320
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.913e1

DP
type: SiteQuality
SIO_000300: 1.37681e6

VQSLOD
type: SiteQuality
SIO_000300: -5.646e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 1.786e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.11e0

QD
type: SiteQuality
SIO_000300: 1.454e1

GenotypeQuality
all individuals: 147
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1283
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2249
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6203
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539314081645219e-5
allele num: 64964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

DP
type: SiteQuality
SIO_000300: 1.392303e6

QD
type: SiteQuality
SIO_000300: 1.316e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

FS
type: SiteQuality
SIO_000300: 5.613e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 45607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6273
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1295
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 129
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65258
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.67180565288484e-4
allele num: 8562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.326e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 2.548e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

DP
type: SiteQuality
SIO_000300: 1.399886e6

MQ
type: SiteQuality
SIO_000300: 5.913e1

MQRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.472e0

QD
type: SiteQuality
SIO_000300: 2.201e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.32e-1

GenotypeQuality
all individuals: 111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529987760097919e-5
allele num: 65360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

DP
type: SiteQuality
SIO_000300: 1.402027e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
SIO_000300: 1.352e1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.03e-1

GenotypeQuality
all individuals: 459
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1020
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45769
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65374
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.825483753194597e-4
allele num: 16434
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.23e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.736e0

FS
type: SiteQuality
SIO_000300: 1.0942e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 1.402842e6

VQSLOD
type: SiteQuality
SIO_000300: -8.391e-1

GenotypeQuality
all individuals: 145
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6311
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1300
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45886
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16333178222429e-4
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.405925e6

FS
type: SiteQuality
SIO_000300: 1.342e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 2.43e0

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeQuality
all individuals: 147
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6305
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 9.75e1
variant carriers: 188

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2269
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 182
allele frequency: 2.116771342172598e-2
allele num: 8598
num of homozygotes: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.525646111128063e-5
allele num: 65546
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.865588127964968e-4
allele num: 16442
num of homozygotes: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 1.475e1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.37e-2

DP
type: SiteQuality
SIO_000300: 1.414931e6

GenotypeQuality
all individuals: 428
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1932
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2167
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 9.75e1
variant carriers: 2295

GenotypeQuality
all individuals: 44413
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 406
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6040
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 10
allele frequency: 1.123595505617977e-2
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 19
allele frequency: 2.919483712354026e-3
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1179
allele frequency: 1.79665356130566e-2
allele num: 65622
num of homozygotes: 10

African
type: Population
allele count: 879
allele frequency: 8.614268914151313e-2
allele num: 10204
num of homozygotes: 39

Latino
type: Population
allele count: 176
allele frequency: 1.526982474405691e-2
allele num: 11526
num of homozygotes: 4

East Asian
type: Population
allele count: 3
allele frequency: 3.488372093023256e-4
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 95
allele frequency: 5.775075987841946e-3
allele num: 16450
num of homozygotes: 3

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.42e0

DP
type: SiteQuality
SIO_000300: 1.496866e6

QD
type: SiteQuality
SIO_000300: 1.501e1

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523322060750084e-5
allele num: 65646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.753e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 1.450452e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.595e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.125e0

MQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

QD
type: SiteQuality
SIO_000300: 1.274e1

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2017
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1142
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2324
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.044788843893676e-5
allele num: 65686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.338e1

DP
type: SiteQuality
SIO_000300: 1.450924e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.47e-1

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1148
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.597852441981296e-4
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.556915879332868e-5
allele num: 65834
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 6.844e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.377e0

DP
type: SiteQuality
SIO_000300: 1.453872e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.27e-1

QD
type: SiteQuality
SIO_000300: 1.156e1

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45001
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1145
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65850
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.216249087813184e-4
allele num: 16444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.0e0

QD
type: SiteQuality
SIO_000300: 1.032e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.226e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-1

FS
type: SiteQuality
SIO_000300: 8.332000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.453974e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.041362530413625e-4
allele num: 16440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 1.453924e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.054e0

FS
type: SiteQuality
SIO_000300: 5.91e-1

QD
type: SiteQuality
SIO_000300: 1.187e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517819197377208e-5
allele num: 65884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.781e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.49e0

VQSLOD
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SIO_000300: -1.965e0

DP
type: SiteQuality
SIO_000300: 1.454034e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.122e0

QD
type: SiteQuality
SIO_000300: 1.279e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44935
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517727051966974e-5
allele num: 65888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.91e0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.13e-1

FS
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

DP
type: SiteQuality
SIO_000300: 1.454208e6

QD
type: SiteQuality
SIO_000300: 1.487e1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 132
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1213
bin: 9.75e1
variant carriers: 19

East Asian
type: Population
allele count: 19
allele frequency: 2.206736353077816e-3
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65912
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
SIO_000300: 1.457411e6

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 48

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65912
num of homozygotes: 0

South Asian
type: Population
allele count: 47
allele frequency: 2.859228616620027e-3
allele num: 16438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 1.457411e6

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.649999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.206e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16428
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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African
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allele count: 3
allele frequency: 2.927971891469842e-4
allele num: 10246
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65926
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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FS
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.063e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.033704456511847e-5
allele num: 65926
num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.455373e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.39e-1

QD
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516162290011523e-5
allele num: 65956
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.54e-1

DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
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ReadPosRankSum
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SIO_000300: -3.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.715e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.579e0

VQSLOD
type: SiteQuality
SIO_000300: -1.155e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65956
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.090875867949811e-5
allele num: 16418
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.405e0

VQSLOD
type: SiteQuality
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DP
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FS
type: SiteQuality
SIO_000300: 5.865e0

QD
type: SiteQuality
SIO_000300: 1.396e1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-2

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
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SIO_000300: -2.02e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.031589159037167e-5
allele num: 65972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e-1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.45e0

VQSLOD
type: SiteQuality
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MQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.85e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65998
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.521e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.019e0

MQRankSum
type: SiteQuality
SIO_000300: -1.791e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 7.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 8.84e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.456283e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.769441187964049e-5
allele num: 10236
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65998
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.021e1

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.601e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.986e0

DP
type: SiteQuality
SIO_000300: 1.455906e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65998
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.093102607847916e-5
allele num: 16412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.06e-1

ReadPosRankSum
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QD
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

African
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Other
type: Population
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66000
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VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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QD
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 3.460207612456747e-4
allele num: 11560
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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East Asian
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num of homozygotes: 0

South Asian
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
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ReadPosRankSum
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FS
type: SiteQuality
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DP
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele frequency: 9.769441187964049e-5
allele num: 10236
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Latino
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European (Non-Finnish)
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African
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Other
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South Asian
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ClippingRankSum
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InbreedingCoeff
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FS
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DP
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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South Asian
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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VQSLOD
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FS
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BaseQRankSum
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MQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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Other
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FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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VQSLOD
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QD
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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Latino
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Other
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East Asian
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European (Non-Finnish)
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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MQ
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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Latino
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Other
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African
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European (Non-Finnish)
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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VQSLOD
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DP
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FS
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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Latino
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Other
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European (Non-Finnish)
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South Asian
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InbreedingCoeff
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MQ
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ClippingRankSum
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MQRankSum
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QD
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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European (Finnish)
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African
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South Asian
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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VQSLOD
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 577
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1168
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.815469179426777e-5
allele num: 10188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.803e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

FS
type: SiteQuality
SIO_000300: 1.1754e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.76e-1

DP
type: SiteQuality
SIO_000300: 1.458009e6

MQRankSum
type: SiteQuality
SIO_000300: -1.526e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

QD
type: SiteQuality
SIO_000300: 4.56e0

GenotypeQuality
all individuals: 6367
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1416
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514142087093453e-5
allele num: 66044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.937e1

MQRankSum
type: SiteQuality
SIO_000300: -1.761e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.627e0

DP
type: SiteQuality
SIO_000300: 1.457663e6

VQSLOD
type: SiteQuality
SIO_000300: -1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.366e0

FS
type: SiteQuality
SIO_000300: 6.820000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.220852154804053e-4
allele num: 16382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.357e1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

DP
type: SiteQuality
SIO_000300: 1.458883e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.985e1

GenotypeQuality
all individuals: 794
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 16

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66054
num of homozygotes: 0

South Asian
type: Population
allele count: 16
allele frequency: 9.766817238432426e-4
allele num: 16382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

DP
type: SiteQuality
SIO_000300: 1.458883e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

QD
type: SiteQuality
SIO_000300: 1.357e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66036
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.662508662508663e-5
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.322e0

QD
type: SiteQuality
SIO_000300: 9.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.938e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.649e-1

DP
type: SiteQuality
SIO_000300: 1.457311e6

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44708
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 2041
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6358
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514279657167086e-5
allele num: 66038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.457489e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

FS
type: SiteQuality
SIO_000300: 5.009e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514279657167086e-5
allele num: 66038
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

FS
type: SiteQuality
SIO_000300: 5.009e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.165e1

DP
type: SiteQuality
SIO_000300: 1.457489e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10070
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65962
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.713e1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.012841091492777e-4
allele num: 9968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.836e0

QD
type: SiteQuality
SIO_000300: 1.43e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.452738e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.188884762965714e-5
allele num: 16158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.907e0

DP
type: SiteQuality
SIO_000300: 1.450789e6

MQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

FS
type: SiteQuality
SIO_000300: 3.196e0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

QD
type: SiteQuality
SIO_000300: 1.381e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.519987840097279e-5
allele num: 65790
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.01010101010101e-4
allele num: 9900
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.04e-1

DP
type: SiteQuality
SIO_000300: 1.450335e6

FS
type: SiteQuality
SIO_000300: 3.218e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65790
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.04e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.218e0

DP
type: SiteQuality
SIO_000300: 1.450335e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.077549532028686e-5
allele num: 65816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.00928542591845e-4
allele num: 9908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.33e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.224e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.451095e6

QD
type: SiteQuality
SIO_000300: 1.241e1

VQSLOD
type: SiteQuality
SIO_000300: 6.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.239925604463732e-4
allele num: 16130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
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QD
type: SiteQuality
SIO_000300: 1.241e1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.451095e6

ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.55913194127838e-5
allele num: 65802
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 1.169590643274854e-4
allele num: 8550
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African
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 1
allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ClippingRankSum
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FS
type: SiteQuality
SIO_000300: 5.27e-1

BaseQRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
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South Asian
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African
type: Population
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allele frequency: 0.0e0
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Latino
type: Population
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allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.520958812435359e-5
allele num: 65748
num of homozygotes: 0

Other
type: Population
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQ
type: SiteQuality
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MQRankSum
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DP
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FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521884702014975e-5
allele num: 65708
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -4.97e-1

MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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QD
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MQ
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6255
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.341372044017794e-4
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.6e-2

FS
type: SiteQuality
SIO_000300: 4.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.77e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.74e-1

QD
type: SiteQuality
SIO_000300: 1.803e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

DP
type: SiteQuality
SIO_000300: 1.444485e6

GenotypeQuality
all individuals: 1176
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
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GenotypeQuality
all individuals: 227
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6225
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.34192037470726e-4
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.173e0

FS
type: SiteQuality
SIO_000300: 4.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.776e1

DP
type: SiteQuality
SIO_000300: 1.441066e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.763e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6231
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.013993104846887e-4
allele num: 9862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 2.477e1

DP
type: SiteQuality
SIO_000300: 1.44083e6

VQSLOD
type: SiteQuality
SIO_000300: -2.174e0

MQRankSum
type: SiteQuality
SIO_000300: -5.16e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

FS
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1957
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6021
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
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GenotypeQuality
all individuals: 252
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2854
bin: 9.75e1
variant carriers: 1724

GenotypeQuality
all individuals: 559
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 173
allele frequency: 2.622006668687481e-2
allele num: 6598
num of homozygotes: 4

South Asian
type: Population
allele count: 85
allele frequency: 5.424377791959157e-3
allele num: 15670
num of homozygotes: 1

Latino
type: Population
allele count: 63
allele frequency: 5.477308294209703e-3
allele num: 11502
num of homozygotes: 0

Other
type: Population
allele count: 14
allele frequency: 1.583710407239819e-2
allele num: 884
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1365
allele frequency: 2.080729246059571e-2
allele num: 65602
num of homozygotes: 16

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

African
type: Population
allele count: 51
allele frequency: 5.175563223056626e-3
allele num: 9854
num of homozygotes: 1

MQ
type: SiteQuality
SIO_000300: 5.974e1

VQSLOD
type: SiteQuality
SIO_000300: 6.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

DP
type: SiteQuality
SIO_000300: 1.643004e6

QD
type: SiteQuality
SIO_000300: 1.364e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
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variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 559
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variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6224
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variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
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variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.17096018735363e-4
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.404e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.97e-1

DP
type: SiteQuality
SIO_000300: 1.459901e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 5.341e0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1478
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 220
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2237
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 269
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2287
bin: 9.75e1
variant carriers: 710

GenotypeQuality
all individuals: 2032
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 642
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2379
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 544
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41784
bin: 6.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 26
allele frequency: 2.261656228253305e-3
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15368
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.257336343115124e-3
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

African
type: Population
allele count: 701
allele frequency: 7.129780309194467e-2
allele num: 9832
num of homozygotes: 18

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.069747539580659e-4
allele num: 65436
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.77e-1

DP
type: SiteQuality
SIO_000300: 1.525997e6

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.52e-2

FS
type: SiteQuality
SIO_000300: 5.18e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 1.371e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41870
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6167
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
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GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 161
bin: 3.75e1
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GenotypeQuality
all individuals: 570
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variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172332942555686e-4
allele num: 8530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65418
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15300
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.914e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.374e0

QD
type: SiteQuality
SIO_000300: 1.386e1

DP
type: SiteQuality
SIO_000300: 1.459922e6

MQRankSum
type: SiteQuality
SIO_000300: 2.82e0

FS
type: SiteQuality
SIO_000300: 1.099e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.971e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2049
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 7.5e0
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GenotypeQuality
all individuals: 262
bin: 3.25e1
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GenotypeQuality
all individuals: 41428
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
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GenotypeQuality
all individuals: 16
bin: 2.5e0
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GenotypeQuality
all individuals: 90
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1519
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.619886137958427e-5
allele num: 15106
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024590163934426e-4
allele num: 9760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65318
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.957e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.31e-1

FS
type: SiteQuality
SIO_000300: 2.881e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

DP
type: SiteQuality
SIO_000300: 1.454799e6

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6089
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40666
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1806
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536475938786798e-5
allele num: 65084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.173e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

FS
type: SiteQuality
SIO_000300: 4.771e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.29e-1

DP
type: SiteQuality
SIO_000300: 1.439263e6

QD
type: SiteQuality
SIO_000300: 1.697e1

GenotypeQuality
all individuals: 1805
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40503
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65044
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.715356458079135e-5
allele num: 11474
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2477e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e0

QD
type: SiteQuality
SIO_000300: 9.09e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.43642e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e0

VQSLOD
type: SiteQuality
SIO_000300: -5.866e0

GenotypeQuality
all individuals: 2407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6035
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539788125153979e-5
allele num: 64944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.48e-1

DP
type: SiteQuality
SIO_000300: 1.430848e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

VQSLOD
type: SiteQuality
SIO_000300: -7.835e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 7.182e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.916e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

QD
type: SiteQuality
SIO_000300: 1.009e1

GenotypeQuality
all individuals: 446
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.03498240529911e-4
allele num: 9662
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.080240258740182e-5
allele num: 64930
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.28e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

FS
type: SiteQuality
SIO_000300: 2.567e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e-1

DP
type: SiteQuality
SIO_000300: 1.430777e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.29e-1

QD
type: SiteQuality
SIO_000300: 1.416e1

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39856
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3943
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6014
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.912961210974456e-4
allele num: 8456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64766
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.184e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.696e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

FS
type: SiteQuality
SIO_000300: 1.154e0

DP
type: SiteQuality
SIO_000300: 1.429163e6

GenotypeQuality
all individuals: 507
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 6014
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 348
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
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variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39856
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13604
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.721437292865864e-5
allele num: 11466
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 34
allele frequency: 5.249668035697743e-4
allele num: 64766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.517450682852807e-4
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.429163e6

FS
type: SiteQuality
SIO_000300: 1.154e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.696e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

QD
type: SiteQuality
SIO_000300: 1.184e1