9-82267864-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82267864
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82267864
    reference: chr 9
allele count: 1
allele frequency: 9.686918784872907e-6
allele num: 103232
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-628+155A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.547+155A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.592+155A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+155A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*414+155A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+155A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.109+155A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.592+155A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.517+155A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.592+155A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.202+155A>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8464
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD

9-82267872-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82267872
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82267872
    reference: chr 9
allele count: 9
allele frequency: 8.81178037126968e-5
allele num: 102136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.517+163A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.109+163A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.547+163A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-628+163A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.592+163A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+163A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+163A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.592+163A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*414+163A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.592+163A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.202+163A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12845
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6663
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6686
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

9-82267877-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82267877
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82267877
    reference: chr 9
allele count: 16
allele frequency: 1.576665352778873e-4
allele num: 101480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.592+168A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.109+168A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+168A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.592+168A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.517+168A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-628+168A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*414+168A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.547+168A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+168A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.202+168A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.592+168A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14504
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16683
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

9-82267886-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82267886
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82267886
    reference: chr 9
allele count: 1
allele frequency: 1.013828622409668e-5
allele num: 98636
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.592+177G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*414+177G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.547+177G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.202+177G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.592+177G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.109+177G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-628+177G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.592+177G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+177G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+177G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.517+177G>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14483
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

9-82268925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268925
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268925
    reference: chr 9
allele count: 1
allele frequency: 8.340144451301897e-6
allele num: 119902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-49C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-49C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1216C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1216C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-49C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-49C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-49C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-49C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-49C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-49C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-49C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/9-82268928-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268928
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268928
    reference: chr 9
allele count: 15
allele frequency: 1.250979934281854e-4
allele num: 119906
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-46C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-46C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-46C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-46C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-46C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-46C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1219C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-46C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-46C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1219C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-46C>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4101
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6999
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

9-82268941-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268941
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268941
    reference: chr 9
allele count: 3
allele frequency: 2.501334044823906e-5
allele num: 119936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-33T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-33T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1232T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1232T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-33T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-33T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-33T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-33T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-33T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-33T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-33T>G
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 51289
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

9-82268942-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268942
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268942
    reference: chr 9
allele count: 1
allele frequency: 8.337780149413021e-6
allele num: 119936
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-32A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-32A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1233A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-32A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-32A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-32A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-32A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-32A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-32A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1233A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-32A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5275
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-82268949-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268949
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268949
    reference: chr 9
allele count: 2
allele frequency: 1.667472611762352e-5
allele num: 119942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-25T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-25T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-25T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-25T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-25T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1240T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-25T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-25T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1240T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-25T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-25T>C
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6997
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

9-82268953-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268953
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268953
    reference: chr 9
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1244T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1244T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-21T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-21T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-21T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-21T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-21T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-21T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-21T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-21T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-21T>C
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

9-82268953-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268953
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268953
    reference: chr 9
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1244T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1244T>G
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6377
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6996
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

9-82268957-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268957
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268957
    reference: chr 9
allele count: 16
allele frequency: 1.334000333500083e-4
allele num: 119940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-17T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-17T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-17T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-17T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-17T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-17T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1248T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-17T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-17T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-17T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1248T>C
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

9-82268959-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268959
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268959
    reference: chr 9
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-15C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-15C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-15C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1250C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-15C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-15C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-15C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-15C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-15C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1250C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-15C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD

9-82268966-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268966
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268966
    reference: chr 9
allele count: 1
allele frequency: 8.337641114575865e-6
allele num: 119938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-8G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-8G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-8G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-8G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-8G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-8G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-8G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-8G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-8G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1257G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1257G>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6376
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1737
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.593-8G>T
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

9-82268970-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268970
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268970
    reference: chr 9
allele count: 10
allele frequency: 8.337641114575864e-5
allele num: 119938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.518-4A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.593-4A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.593-4A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.593-4A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1261A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*415-4A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.548-4A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.203-4A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.110-4A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-627-4A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1261A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7002
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5273
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.593-4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

9-82268982-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82268982
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82268982
    reference: chr 9
allele count: 1
allele frequency: 8.337919188887221e-6
allele num: 119934
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.601T>C
  hgvsp: ENSP00000365735.2:p.Ser201Pro
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.601T>C
  hgvsp: ENSP00000365720.4:p.Ser201Pro
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1273T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.211T>C
  hgvsp: ENSP00000417844.1:p.Ser71Pro
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.526T>C
  hgvsp: ENSP00000265284.6:p.Ser176Pro
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1273T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.118T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-619T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.556T>C
  hgvsp: ENSP00000409313.1:p.Ser186Pro
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.601T>C
  hgvsp: ENSP00000417715.1:p.Ser201Pro
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*423T>C
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser201Pro
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

9-82269001-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82269001
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82269001
    reference: chr 9
allele count: 1
allele frequency: 8.337085021593051e-6
allele num: 119946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+11A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+11A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1292A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+11A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.609+11A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1292A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+11A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-611+11A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+11A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.126+11A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+11A>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6374
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6063
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

9-82269016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82269016
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82269016
    reference: chr 9
allele count: 2
allele frequency: 1.66761164659974e-5
allele num: 119932
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+26G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.126+26G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-611+26G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1307G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.609+26G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1307G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+26G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+26G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+26G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+26G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+26G>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum

9-82269019-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82269019
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82269019
    reference: chr 9
allele count: 1
allele frequency: 8.338892595063375e-6
allele num: 119920
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+29A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+29A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+29A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+29A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+29A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-611+29A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.126+29A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1310A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1310A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.609+29A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+29A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6504
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4097
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

9-82269023-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82269023
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82269023
    reference: chr 9
allele count: 3
allele frequency: 2.50191813723855e-5
allele num: 119908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.609+33C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1314C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+33C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+33C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+33C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+33C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+33C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.126+33C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-611+33C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+33C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1314C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6994
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3528
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6503
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 867
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

9-82269031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82269031
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82269031
    reference: chr 9
allele count: 2
allele frequency: 1.668195846192343e-5
allele num: 119890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-611+41G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+41G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1322G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.126+41G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+41G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+41G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1322G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.609+41G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+41G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+41G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+41G>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5265
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6062
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6500
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

9-82269035-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82269035
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82269035
    reference: chr 9
allele count: 2
allele frequency: 1.668279336692136e-5
allele num: 119884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1326G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+45G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1326G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+45G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+45G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.126+45G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.609+45G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+45G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-611+45G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+45G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+45G>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4092
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

9-82269037-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82269037
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82269037
    reference: chr 9
allele count: 1
allele frequency: 8.341675008341675e-6
allele num: 119880
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+47A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.126+47A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-611+47A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+47A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.609+47A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+47A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+47A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+47A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1328A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1328A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+47A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6498
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6373
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4436
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/9-82269038-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82269038
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82269038
    reference: chr 9
allele count: 38
allele frequency: 3.170153835886141e-4
allele num: 119868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-611+48A>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+48A>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.126+48A>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+48A>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+48A>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1329A>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+48A>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.609+48A>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+48A>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1329A>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+48A>C
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4432
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5676
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6371
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5261
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP

9-82269039-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82269039
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82269039
    reference: chr 9
allele count: 1
allele frequency: 8.341953351796856e-6
allele num: 119876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+49A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.609+49A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+1330A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+1330A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+49A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+49A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+49A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.126+49A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+49A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+49A>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-611+49A>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5675
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4085
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2669
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6990
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

9-82286086-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286086
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286086
    reference: chr 9
allele count: 27
allele frequency: 2.518186905428092e-3
allele num: 10722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17096A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.127-38A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17096A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-610-38A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17096A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18377A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17096A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17096A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.610-38A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17096A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7568A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18377A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1202
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-82286095-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286095
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286095
    reference: chr 9
allele count: 1
allele frequency: 9.189487226612754e-5
allele num: 10882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17105T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17105T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17105T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17105T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18386T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.610-29T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.127-29T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17105T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18386T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17105T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-610-29T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7577T>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1362
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

9-82286129-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286129
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286129
    reference: chr 9
allele count: 14
allele frequency: 1.184633609747842e-3
allele num: 11818
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18420C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.615C>G
  hgvsp: ENSP00000417715.1:p.Asn205Lys
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17139C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18420C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17139C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.132C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7611C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17139C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-605C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17139C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17139C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17139C>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn205Lys
num of homozygotes: 1
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-82286141-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286141
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286141
    reference: chr 9
allele count: 14
allele frequency: 1.17096018735363e-3
allele num: 11956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17151C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7623C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18432C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17151C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17151C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.144C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18432C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-593C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.627C>T
  hgvsp: ENST00000462803.1:c.627C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17151C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17151C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17151C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu209Leu
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

9-82286163-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286163
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286163
    reference: chr 9
allele count: 2
allele frequency: 1.659475605708596e-4
allele num: 12052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17173C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17173C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.166C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17173C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-571C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.649C>G
  hgvsp: ENSP00000417715.1:p.Gln217Glu
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17173C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17173C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18454C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17173C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7645C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18454C>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln217Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

9-82286178-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286178
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286178
    reference: chr 9
allele count: 1
allele frequency: 8.265829062654984e-5
allele num: 12098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-556T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18469T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17188T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17188T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7660T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.664T>G
  hgvsp: ENSP00000417715.1:p.Phe222Val
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.181T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17188T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18469T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17188T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17188T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17188T>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe222Val
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

9-82286185-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286185
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286185
    reference: chr 9
allele count: 1
allele frequency: 8.250825082508251e-5
allele num: 12120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7667T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17195T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.188T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18476T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18476T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17195T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17195T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-549T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.671T>A
  hgvsp: ENSP00000417715.1:p.Val224Asp
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17195T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17195T>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17195T>A
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val224Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

9-82286193-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286193
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286193
    reference: chr 9
allele count: 2
allele frequency: 1.649348507339601e-4
allele num: 12126
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17203A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17203A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17203A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.679A>G
  hgvsp: ENSP00000417715.1:p.Ser227Gly
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7675A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17203A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17203A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18484A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17203A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-541A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18484A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.196A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser227Gly
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

9-82286258-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286258
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286256
    reference: chr 9
allele count: 1
allele frequency: 8.344459279038718e-5
allele num: 11984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17271_219+17272delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.739+8_739+9delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.264_265delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17271_609+17272delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17271_*431+17272delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17271_609+17272delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7743_154+7744delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18552_592+18553delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-481+8_-481+9delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18552_592+18553delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17271_534+17272delAA
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17271_564+17272delAA
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.-481+8_-481+9delAA
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: GAA
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

9-82286263-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286263
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286263
    reference: chr 9
allele count: 1
allele frequency: 8.357011532675916e-5
allele num: 11966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.739+10G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17273G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18554G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17273G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18554G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17273G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17273G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17273G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17273G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.266G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7745G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-481+10G>A
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

9-82286273-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286273
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286273
    reference: chr 9
allele count: 3
allele frequency: 2.529084471421346e-4
allele num: 11862
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17283A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17283A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18564A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17283A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.276A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17283A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-481+20A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.739+20A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17283A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18564A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7755A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17283A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

9-82286274-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286274
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286274
    reference: chr 9
allele count: 1
allele frequency: 8.427439743805832e-5
allele num: 11866
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-481+21C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17284C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17284C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7756C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17284C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17284C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18565C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18565C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.277C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17284C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17284C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.739+21C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

9-82286280-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286280
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286280
    reference: chr 9
allele count: 92
allele frequency: 7.843137254901961e-3
allele num: 11730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18571C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18571C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17290C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17290C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7762C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.283C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17290C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-481+27C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17290C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.739+27C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17290C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17290C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

9-82286286-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286286
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286286
    reference: chr 9
allele count: 7583
allele frequency: 6.466825857069759e-1
allele num: 11726
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18577C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.739+33C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17296C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17296C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17296C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17296C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17296C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.289C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7768C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-481+33C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18577C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17296C>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 7.5e0
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 2.25e1
  variant carriers: 1504
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 1.25e1
  variant carriers: 614
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 2.5e0
  variant carriers: 320
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 1.75e1
  variant carriers: 1305
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 3.25e1
  variant carriers: 447
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 2.75e1
  variant carriers: 1002
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 3.75e1
  variant carriers: 134
genotype quality: GenotypeQuality
num of homozygotes: 2531
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-82286298-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82286298
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82286298
    reference: chr 9
allele count: 1
allele frequency: 9.084302325581395e-5
allele num: 11008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.609+17308C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*431+17308C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000493163
  gene symbol: TLE4
  hgvsc: ENST00000493163.1:n.301C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.609+17308C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.219+17308C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.739+45C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.564+17308C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.592+18589C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.534+17308C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.154+7780C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-481+45C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.592+18589C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-82308502-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308502
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308502
    reference: chr 9
allele count: 5
allele frequency: 4.560213053153843e-5
allele num: 109644
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11196G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11196G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11196G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11196G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11196G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-47G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11196G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11196G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-47G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11196G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11196G>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1743
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5337
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13004
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12258
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-82308519-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308519
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308519
    reference: chr 9
allele count: 11
allele frequency: 9.992187925803463e-5
allele num: 110086
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11179C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-30C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11179C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11179C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11179C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11179C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11179C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11179C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11179C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11179C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-30C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4857
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13534
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

9-82308524-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308524
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308524
    reference: chr 9
allele count: 1
allele frequency: 9.057806923787613e-6
allele num: 110402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11174G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-25G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-25G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11174G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11174G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11174G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11174G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11174G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11174G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11174G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11174G>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

9-82308525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308525
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308525
    reference: chr 9
allele count: 1
allele frequency: 9.056658455296334e-6
allele num: 110416
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-24C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11173C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11173C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11173C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11173C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11173C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11173C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11173C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11173C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-24C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11173C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16215
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/9-82308526-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308526
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308526
    reference: chr 9
allele count: 1
allele frequency: 9.048463570885663e-6
allele num: 110516
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11172C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11172C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-23C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11172C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11172C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11172C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11172C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11172C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11172C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11172C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-23C>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13764
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

9-82308528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308528
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308528
    reference: chr 9
allele count: 12
allele frequency: 1.084363478638039e-4
allele num: 110664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11170C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11170C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11170C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11170C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-21C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11170C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11170C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-21C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11170C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11170C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11170C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/9-82308530-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308530
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308530
    reference: chr 9
allele count: 1
allele frequency: 9.026411279403535e-6
allele num: 110786
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-19C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11168C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11168C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11168C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11168C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11168C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11168C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11168C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11168C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11168C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-19C>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

9-82308530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308530
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308530
    reference: chr 9
allele count: 8
allele frequency: 7.221129023522828e-5
allele num: 110786
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11168C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11168C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11168C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11168C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11168C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11168C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11168C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-19C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11168C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-19C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11168C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6253
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6689
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

9-82308531-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308531
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308531
    reference: chr 9
allele count: 1
allele frequency: 9.01648212933242e-6
allele num: 110908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11167G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11167G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11167G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11167G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11167G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-18G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11167G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11167G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11167G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11167G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-18G>A
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

9-82308531-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308531
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308531
    reference: chr 9
allele count: 1
allele frequency: 9.01648212933242e-6
allele num: 110908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11167G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11167G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-18G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11167G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11167G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11167G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11167G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11167G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-18G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11167G>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11167G>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13899
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

9-82308541-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308541
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308541
    reference: chr 9
allele count: 1
allele frequency: 8.968770740282336e-6
allele num: 111498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11157A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11157A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11157A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11157A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11157A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11157A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11157A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-8A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-8A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11157A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11157A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.593-8A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

9-82308546-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308546
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308546
    reference: chr 9
allele count: 1
allele frequency: 8.948385711217697e-6
allele num: 111752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11152A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11152A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11152A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.593-3A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11152A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11152A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.593-3A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11152A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11152A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11152A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11152A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12330
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.593-3A>G
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

9-82308551-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308551
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308551
    reference: chr 9
allele count: 2
allele frequency: 1.787757437070938e-5
allele num: 111872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11147A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11147A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11147A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.595A>G
  hgvsp: ENSP00000365727.3:p.Arg199Gly
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11147A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.595A>G
  hgvsp: ENSP00000365703.4:p.Arg199Gly
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11147A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11147A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11147A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11147A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11147A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12336
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg199Gly
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

9-82308553-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308553
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308552
    reference: chr 9
allele count: 1
allele frequency: 8.934634216075193e-6
allele num: 111924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11144delG
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11144delG
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11144delG
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11144delG
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11144delG
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.598delG
  hgvsp: ENSP00000365703.4:p.Asp200ThrfsTer80
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11144delG
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.598delG
  hgvsp: ENSP00000365727.3:p.Asp200ThrfsTer75
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11144delG
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11144delG
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11144delG
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp200ThrfsTer75
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: AG
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

9-82308560-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308560
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308560
    reference: chr 9
allele count: 12
allele frequency: 1.071390307489018e-4
allele num: 112004
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11138C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11138C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.604C>G
  hgvsp: ENSP00000365727.3:p.Leu202Val
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11138C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11138C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.604C>G
  hgvsp: ENSP00000365703.4:p.Leu202Val
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11138C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11138C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11138C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11138C>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11138C>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Leu202Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum

9-82308560-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308560
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308560
    reference: chr 9
allele count: 103
allele frequency: 9.19610013928074e-4
allele num: 112004
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11138C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11138C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11138C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.604C>T
  hgvsp: ENSP00000365727.3:p.Leu202Phe
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11138C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11138C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11138C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.604C>T
  hgvsp: ENSP00000365703.4:p.Leu202Phe
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11138C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11138C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11138C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12322
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 7387
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 14284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
hgvs: p.Leu202Phe
num of homozygotes: 1
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

9-82308573-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308573
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308573
    reference: chr 9
allele count: 1
allele frequency: 8.926658573162893e-6
allele num: 112024
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11125G>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11125G>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11125G>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11125G>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11125G>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11125G>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.617G>C
  hgvsp: ENSP00000365727.3:p.Ser206Thr
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11125G>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11125G>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.617G>C
  hgvsp: ENSP00000365703.4:p.Ser206Thr
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11125G>C
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12344
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser206Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

9-82308578-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308578
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308578
    reference: chr 9
allele count: 1
allele frequency: 8.931123178050872e-6
allele num: 111968
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.619+3A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11120A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11120A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11120A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11120A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11120A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.619+3A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11120A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11120A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11120A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11120A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8176
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.619+3A>G
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-82308579-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308579
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308579
    reference: chr 9
allele count: 1
allele frequency: 8.93160179346564e-6
allele num: 111962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.619+4C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11119C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.619+4C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11119C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11119C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11119C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11119C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11119C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11119C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11119C>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11119C>A
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.619+4C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-82308580-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308580
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308580
    reference: chr 9
allele count: 1
allele frequency: 8.932240027154009e-6
allele num: 111954
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11118C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11118C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11118C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.619+5C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11118C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11118C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11118C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.619+5C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11118C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11118C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11118C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12346
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.619+5C>T
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS

9-82308581-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308581
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308581
    reference: chr 9
allele count: 1
allele frequency: 8.933357155619082e-6
allele num: 111940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11117T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11117T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11117T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11117T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.619+6T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.619+6T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11117T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11117T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11117T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11117T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11117T>C
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12345
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.619+6T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-82308588-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308588
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308588
    reference: chr 9
allele count: 1
allele frequency: 8.941184885821069e-6
allele num: 111842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.619+13T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11110T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11110T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11110T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11110T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11110T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.619+13T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11110T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11110T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11110T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11110T>C
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2089
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

9-82308596-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308596
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308596
    reference: chr 9
allele count: 26
allele frequency: 2.327330015396183e-4
allele num: 111716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11102T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11102T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.619+21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11102T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11102T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11102T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11102T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11102T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11102T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.619+21T>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11102T>G
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

9-82308604-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308604
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308604
    reference: chr 9
allele count: 2
allele frequency: 1.791857798165138e-5
allele num: 111616
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11094T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11094T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11094T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.619+29T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11094T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11094T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11094T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11094T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11094T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.619+29T>C
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11094T>C
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

9-82308606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82308606
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82308606
    reference: chr 9
allele count: 3
allele frequency: 2.689473401108063e-5
allele num: 111546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-11092C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-11092C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-11092C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.619+31C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-11092C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-11092C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-11092C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-11092C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-11092C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.619+31C>T
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-11092C>T
  variant of: http://identifiers.org/hgnc/11840
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13601
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1720
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3144
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

9-82319647-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82319647
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82319647
    reference: chr 9
allele count: 203
allele frequency: 1.688964323748669e-3
allele num: 120192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-51G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-51G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-51G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-51G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-51G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-51G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-51G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.620-61G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000495170
  gene symbol: TLE4
  hgvsc: ENST00000495170.1:n.88G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.620-61G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-51G>A
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-51G>A
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2861
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3968
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23710
  bin: 9.75e1
  variant carriers: 114
genotype quality: GenotypeQuality
num of homozygotes: 5
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

9-82319652-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82319652
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82319652
    reference: chr 9
allele count: 1
allele frequency: 8.317114959162966e-6
allele num: 120234
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-46A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-46A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-46A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-46A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000495170
  gene symbol: TLE4
  hgvsc: ENST00000495170.1:n.93A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.620-56A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-46A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-46A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-46A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-46A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.620-56A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-46A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2300
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2869
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23630
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

9-82319656-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 82319656
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 82319656
    reference: chr 9
allele count: 1
allele frequency: 8.315731701232391e-6
allele num: 120254
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365735
  ensembl transcript: ENST00000376552
  gene symbol: TLE4
  hgvsc: ENST00000376552.2:c.610-42A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000265284
  ensembl transcript: ENST00000265284
  gene symbol: TLE4
  hgvsc: ENST00000265284.6:c.535-42A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417245
  ensembl transcript: ENST00000470872
  gene symbol: TLE4
  hgvsc: ENST00000470872.1:c.*432-42A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365720
  ensembl transcript: ENST00000376537
  gene symbol: TLE4
  hgvsc: ENST00000376537.4:c.610-42A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365727
  ensembl transcript: ENST00000376544
  gene symbol: TLE4
  hgvsc: ENST00000376544.3:c.620-52A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417844
  ensembl transcript: ENST00000490347
  gene symbol: TLE4
  hgvsc: ENST00000490347.1:c.220-42A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000463431
  gene symbol: TLE4
  hgvsc: ENST00000463431.1:n.155-42A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365703
  ensembl transcript: ENST00000376520
  gene symbol: TLE4
  hgvsc: ENST00000376520.4:c.620-52A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000417715
  ensembl transcript: ENST00000462803
  gene symbol: TLE4
  hgvsc: ENST00000462803.1:c.740-42A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106829
  ensembl transcript: ENST00000495170
  gene symbol: TLE4
  hgvsc: ENST00000495170.1:n.97A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000365717
  ensembl transcript: ENST00000376534
  gene symbol: TLE4
  hgvsc: ENST00000376534.4:c.-480-42A>G
  variant of: http://identifiers.org/hgnc/11840
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106829
  ensembl protein: ENSP00000409313
  ensembl transcript: ENST00000428713
  gene symbol: TLE4
  hgvsc: ENST00000428713.1:c.565-42A>G
  variant of: http://identifiers.org/hgnc/11840
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 2504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12053
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4540
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2180
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3155
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 382
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 944
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4442
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6550
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9926
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.335113484646195e-4
allele num: 7490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56230
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.207916e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.0e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.326e1

GenotypeQuality
all individuals: 702
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10657
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7742
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11658
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3161
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2022
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4907
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6186
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 9.46969696969697e-4
allele num: 7392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7348
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55590
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.039983680130559e-4
allele num: 9804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.186e1

FS
type: SiteQuality
SIO_000300: 8.081e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 1.159221e6

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2036
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1159
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 849
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2835
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6691
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8599
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 436
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7987
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11291
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3166
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 990
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4958
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2457
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7286
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6160
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55250
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 2.18161985274066e-3
allele num: 7334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.474e0

DP
type: SiteQuality
SIO_000300: 1.141638e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

QD
type: SiteQuality
SIO_000300: 1.298e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

GenotypeQuality
all individuals: 4959
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3635
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1197
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4522
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7059
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9204
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8084
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3151
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.654533421575116e-4
allele num: 6044
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7098
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.121077e6

FS
type: SiteQuality
SIO_000300: 2.363e0

VQSLOD
type: SiteQuality
SIO_000300: -1.613e0

MQ
type: SiteQuality
SIO_000300: 5.747e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.002e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.591e0

QD
type: SiteQuality
SIO_000300: 8.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 885
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51289
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 957
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

DP
type: SiteQuality
SIO_000300: 4.087346e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.111e0

FS
type: SiteQuality
SIO_000300: 1.3222e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.229e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

VQSLOD
type: SiteQuality
SIO_000300: -2.395e0

QD
type: SiteQuality
SIO_000300: 1.226e1

GenotypeQuality
all individuals: 1289
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1548
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51292
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 888
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 959
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.691117677733357e-5
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 1.458941225510629e-3
allele num: 9596
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.75e0

DP
type: SiteQuality
SIO_000300: 4.087483e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.099e0

QD
type: SiteQuality
SIO_000300: 1.358e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.75e-1

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.526115687516973e-5
allele num: 66282
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BaseQRankSum
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ReadPosRankSum
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DP
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MQ
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FS
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VQSLOD
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QD
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InbreedingCoeff
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SIO_000300: 2.6e-3

MQRankSum
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SIO_000300: 1.69e-1

ClippingRankSum
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SIO_000300: -6.830000000000001e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66280
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South Asian
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QD
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VQSLOD
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FS
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 2.5e-3

DP
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MQRankSum
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MQ
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.017319413433106e-5
allele num: 66284
num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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DP
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FS
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SIO_000300: 9.72e-1

BaseQRankSum
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9600
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.512401693889897e-4
allele num: 6612
num of homozygotes: 0

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: 5.35e0

DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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QD
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ReadPosRankSum
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SIO_000300: 1.49e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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South Asian
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East Asian
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European (Non-Finnish)
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

Other
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.263057843758486e-4
allele num: 66282
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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Latino
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allele num: 11510
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BaseQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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DP
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InbreedingCoeff
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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FS
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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East Asian
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European (Finnish)
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European (Non-Finnish)
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allele num: 66282
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South Asian
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Latino
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.347e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.047e0

DP
type: SiteQuality
SIO_000300: 4.088303e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeDepth
all individuals: 4434
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51284
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 566
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017410458344649e-5
allele num: 66282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.058681185722928e-3
allele num: 6612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.26e1

MQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

DP
type: SiteQuality
SIO_000300: 4.08894e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

FS
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

GenotypeDepth
all individuals: 6995
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042318115488847e-4
allele num: 9594
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.088e0

MQ
type: SiteQuality
SIO_000300: 5.904e1

VQSLOD
type: SiteQuality
SIO_000300: -1.775e0

QD
type: SiteQuality
SIO_000300: 1.041e1

DP
type: SiteQuality
SIO_000300: 4.088303e6

FS
type: SiteQuality
SIO_000300: 2.277e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.03e0

GenotypeQuality
all individuals: 1106
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 568
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 888
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variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508523155830442e-5
allele num: 66290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

QD
type: SiteQuality
SIO_000300: 8.92e0

DP
type: SiteQuality
SIO_000300: 4.087778e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 51280
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 879
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variant carriers: 0

GenotypeQuality
all individuals: 427
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variant carriers: 0

GenotypeQuality
all individuals: 567
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variant carriers: 0

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 102
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variant carriers: 0

GenotypeQuality
all individuals: 2057
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.084636230977694e-4
allele num: 9594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66280
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

FS
type: SiteQuality
SIO_000300: 5.108e0

DP
type: SiteQuality
SIO_000300: 4.086857e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.0e-3

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.042535446205171e-4
allele num: 9592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.571e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 2.88e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

FS
type: SiteQuality
SIO_000300: 3.247e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.07e0

QD
type: SiteQuality
SIO_000300: 1.523e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

DP
type: SiteQuality
SIO_000300: 4.086561e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1284
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.328830926874709e-4
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66270
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

FS
type: SiteQuality
SIO_000300: 7.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.179e1

DP
type: SiteQuality
SIO_000300: 4.085716e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 913
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.082725060827251e-5
allele num: 16440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509251713000694e-5
allele num: 66258
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.084592e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

FS
type: SiteQuality
SIO_000300: 9.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.958e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

QD
type: SiteQuality
SIO_000300: 1.328e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 1.164144353899884e-4
allele num: 8590
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African
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allele num: 9594
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 892
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16442
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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MQ
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DP
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FS
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: 4.0e-4

QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: -1.248e0

VQSLOD
type: SiteQuality
SIO_000300: -7.4e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8590
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European (Non-Finnish)
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allele frequency: 1.509433962264151e-5
allele num: 66250
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
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Other
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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BaseQRankSum
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FS
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SIO_000300: 9.54e-1

MQ
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InbreedingCoeff
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SIO_000300: 1.5e-3

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
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allele frequency: 3.441084462982273e-3
allele num: 9590
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 7.548309178743961e-5
allele num: 66240
num of homozygotes: 0

QD
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MQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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SIO_000300: 7.7e-2

FS
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SIO_000300: 9.05e-1

BaseQRankSum
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DP
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SIO_000300: 4.083122e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.042752867570386e-4
allele num: 9590
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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ClippingRankSum
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SIO_000300: -1.697e0

VQSLOD
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 24
allele frequency: 8.097165991902834e-3
allele num: 2964
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 6.437768240343348e-3
allele num: 466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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Other
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allele count: 0
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: NaN
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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Other
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South Asian
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allele num: 6944
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Latino
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BaseQRankSum
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ClippingRankSum
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QD
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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VQSLOD
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MQ
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MQRankSum
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QD
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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Other
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South Asian
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Latino
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MQ
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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DP
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MQ
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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Latino
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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South Asian
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DP
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VQSLOD
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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VQSLOD
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DP
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European (Non-Finnish)
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African
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DP
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MQ
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InbreedingCoeff
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VQSLOD
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European (Non-Finnish)
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DP
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 130
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 1.339046598821639e-4
allele num: 7468
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
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ReadPosRankSum
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SIO_000300: 7.44e-1

BaseQRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeDepth
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variant carriers: 23

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
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Other
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allele num: 130
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South Asian
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African
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 7.793764988009592e-3
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DP
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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ClippingRankSum
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MQ
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QD
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MQRankSum
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SIO_000300: 1.93e-1

ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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allele frequency: 6.010222489476849e-1
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African
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Other
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allele num: 130
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European (Finnish)
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Latino
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allele frequency: 6.764705882352942e-1
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South Asian
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allele frequency: 6.92027027027027e-1
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
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QD
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DP
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MQRankSum
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FS
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 6936
num of homozygotes: 0

East Asian
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Other
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African
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Latino
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European (Finnish)
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allele frequency: NaN
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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ClippingRankSum
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FS
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QD
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MQRankSum
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VQSLOD
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8180
num of homozygotes: 0

African
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Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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QD
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InbreedingCoeff
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DP
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VQSLOD
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MQ
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FS
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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allele frequency: 7.580978635423845e-4
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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Latino
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QD
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MQ
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ReadPosRankSum
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InbreedingCoeff
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DP
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

Other
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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South Asian
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.648478454386601e-5
allele num: 60662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

DP
type: SiteQuality
SIO_000300: 1.925723e6

FS
type: SiteQuality
SIO_000300: 3.822e0

VQSLOD
type: SiteQuality
SIO_000300: -1.816e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

MQ
type: SiteQuality
SIO_000300: 5.847e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

QD
type: SiteQuality
SIO_000300: 1.253e1

GenotypeQuality
all individuals: 3269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
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GenotypeQuality
all individuals: 4219
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14814
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.647717910693689e-5
allele num: 60690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.081e0

DP
type: SiteQuality
SIO_000300: 1.927703e6

FS
type: SiteQuality
SIO_000300: 9.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.912e1

QD
type: SiteQuality
SIO_000300: 1.82e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.805e0

VQSLOD
type: SiteQuality
SIO_000300: -6.447000000000001e-1

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 12
allele frequency: 1.06138333628162e-3
allele num: 11306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.194e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.876e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-2

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

DP
type: SiteQuality
SIO_000300: 1.931428e6

QD
type: SiteQuality
SIO_000300: 1.065e1

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17066
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 6689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3271
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.645873794397446e-5
allele num: 60758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15008
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.081e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

FS
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 5.888e1

DP
type: SiteQuality
SIO_000300: 1.934759e6

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4783
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3153
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3271
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.844861135680169e-5
allele num: 11306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.875242766384674e-5
allele num: 60758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.663113006396588e-5
allele num: 15008
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

MQ
type: SiteQuality
SIO_000300: 5.888e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

FS
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

QD
type: SiteQuality
SIO_000300: 1.081e1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.92e-1

DP
type: SiteQuality
SIO_000300: 1.934759e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.644736842105263e-5
allele num: 60800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15082
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.936981e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

FS
type: SiteQuality
SIO_000300: 2.829e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.1e-1

QD
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SIO_000300: 1.057e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15082
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.644736842105263e-5
allele num: 60800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.829e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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SIO_000300: 6.26e-1

ClippingRankSum
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SIO_000300: -1.92e-1

DP
type: SiteQuality
SIO_000300: 1.936981e6

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.63950552513362e-5
allele num: 60994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15460
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.79e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

MQRankSum
type: SiteQuality
SIO_000300: -3.63e-1

BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.95e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.482e-1

DP
type: SiteQuality
SIO_000300: 1.94789e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.63735795919704e-5
allele num: 61074
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.616e0

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 8.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 1.951085e6

GenotypeQuality
all individuals: 2090
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.76772140710624e-4
allele num: 11314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15694
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61116
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

MQRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 7.56e-1

DP
type: SiteQuality
SIO_000300: 1.952815e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.27e-1

QD
type: SiteQuality
SIO_000300: 8.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.13e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.221299462628236e-4
allele num: 8188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61124
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15738
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e-1

QD
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SIO_000300: 1.277e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.94e-1

FS
type: SiteQuality
SIO_000300: 9.705e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.269e0

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.953262e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 12

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15798
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.350356002946231e-3
allele num: 8146
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.84016973125884e-5
allele num: 11312
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.151e1

MQ
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FS
type: SiteQuality
SIO_000300: 5.33e-1

MQRankSum
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SIO_000300: 3.19e-1

DP
type: SiteQuality
SIO_000300: 1.957518e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.014e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 102

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 68
allele frequency: 1.112092369083832e-3
allele num: 61146
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 18
allele frequency: 2.736394040741867e-3
allele num: 6578
num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 4.43094062539562e-4
allele num: 15798
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.072135785007072e-4
allele num: 11312
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.392344497607655e-3
allele num: 836
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.39e-2

QD
type: SiteQuality
SIO_000300: 1.151e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15810
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 1.227596366314756e-4
allele num: 8146
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11304
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
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QD
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MQRankSum
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DP
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InbreedingCoeff
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FS
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MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
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ClippingRankSum
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SIO_000300: -5.35e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.849557522123894e-5
allele num: 11300
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61134
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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DP
type: SiteQuality
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MQRankSum
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QD
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InbreedingCoeff
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FS
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ReadPosRankSum
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18450
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12716
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61132
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.334726973267453e-5
allele num: 15786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.234e0

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

QD
type: SiteQuality
SIO_000300: 7.57e0

MQ
type: SiteQuality
SIO_000300: 5.875e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 2.883e0

DP
type: SiteQuality
SIO_000300: 1.952559e6

VQSLOD
type: SiteQuality
SIO_000300: -1.985e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.94e-1

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6827
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.635965055786408e-5
allele num: 61126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15782
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.109e0

VQSLOD
type: SiteQuality
SIO_000300: -1.212e0

QD
type: SiteQuality
SIO_000300: 8.74e0

DP
type: SiteQuality
SIO_000300: 1.952201e6

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.831e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.6e-1

FS
type: SiteQuality
SIO_000300: 8.56e-1

GenotypeQuality
all individuals: 609
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4779
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
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GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4215
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6827
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.227596366314756e-4
allele num: 8146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61124
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15774
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.663e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e0

FS
type: SiteQuality
SIO_000300: 1.111e0

MQRankSum
type: SiteQuality
SIO_000300: 4.32e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.691e-1

DP
type: SiteQuality
SIO_000300: 1.951859e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 1.102e1

GenotypeQuality
all individuals: 76
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4768
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12715
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6763
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.227897838899803e-4
allele num: 8144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61072
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.907e-1

FS
type: SiteQuality
SIO_000300: 3.388e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.036e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.633e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

QD
type: SiteQuality
SIO_000300: 1.168e1

DP
type: SiteQuality
SIO_000300: 1.948288e6

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4757
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variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17534
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12723
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 4201
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.193229115458985e-5
allele num: 61026
num of homozygotes: 0

African
type: Population
allele count: 21
allele frequency: 2.57985257985258e-3
allele num: 8140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.941898e6

MQ
type: SiteQuality
SIO_000300: 5.901e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 6.53e-1

QD
type: SiteQuality
SIO_000300: 1.351e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.76e-1

GenotypeQuality
all individuals: 4194
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 535
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GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 521
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GenotypeQuality
all individuals: 4738
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variant carriers: 0

GenotypeQuality
all individuals: 131
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variant carriers: 0

GenotypeQuality
all individuals: 12700
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2086
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3263
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11292
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.458210422812193e-4
allele num: 8136
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.119e0

DP
type: SiteQuality
SIO_000300: 1.923974e6

FS
type: SiteQuality
SIO_000300: 1.0257e1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 5.924e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e0

QD
type: SiteQuality
SIO_000300: 1.577e1

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3088
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
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GenotypeQuality
all individuals: 80
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
all individuals: 934
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variant carriers: 0

GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 6495
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.920775514221041e-5
allele num: 60966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.929e1

FS
type: SiteQuality
SIO_000300: 6.929999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.1e-2

DP
type: SiteQuality
SIO_000300: 1.918043e6

QD
type: SiteQuality
SIO_000300: 1.206e1

VQSLOD
type: SiteQuality
SIO_000300: 8.44e-1

GenotypeDepth
all individuals: 608
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 33
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 312
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 235
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GenotypeQuality
all individuals: 507
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GenotypeQuality
all individuals: 579
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variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 3.25e1
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GenotypeQuality
all individuals: 303
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GenotypeQuality
all individuals: 175
bin: 2.75e1
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 380
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GenotypeQuality
all individuals: 52110
bin: 9.75e1
variant carriers: 190

GenotypeQuality
all individuals: 348
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 6.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 183
allele frequency: 1.120225269343781e-2
allele num: 16336
num of homozygotes: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732501732501733e-4
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.406449284081338e-4
allele num: 66488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.232142857142857e-3
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
type: SiteQuality
SIO_000300: 9.1e-2

QD
type: SiteQuality
SIO_000300: 1.347e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.785e0

FS
type: SiteQuality
SIO_000300: 2.491e0

DP
type: SiteQuality
SIO_000300: 5.283484e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

GenotypeDepth
all individuals: 3982
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3610
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52030
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 98
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514692517418964e-4
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.748e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.78e0

VQSLOD
type: SiteQuality
SIO_000300: -9.453e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 4.604e0

DP
type: SiteQuality
SIO_000300: 5.274857e6

QD
type: SiteQuality
SIO_000300: 1.446e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e0