6-31132334-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132334
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132334
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 50878
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.*44G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.*44G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1723C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.*44G>A
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26665
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3454
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28548
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3010
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4989
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2037
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

6-31132337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132337
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132337
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 50410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1720C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.*41G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.*41G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.*41G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.*41G>A
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26723
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8006
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2076
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4987
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2908
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7751
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

6-31132347-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132347
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132347
    reference: chr 6
allele count: 1
allele frequency: 2.078397140125535e-5
allele num: 48114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.*31G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.*31G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1710C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.*31G>A
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2835
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29279
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8624
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

6-31132348-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132348
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132349
    reference: chr 6
allele count: 1
allele frequency: 2.088991017338625e-5
allele num: 47870
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.*29dupA
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.*29dupA
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.*29dupA
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.*29dupA
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.*29dupA
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1708dupT
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.*29dupA
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8792
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8709
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

6-31132349-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132349
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132349
    reference: chr 6
allele count: 1
allele frequency: 2.09494280806134e-5
allele num: 47734
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.*29A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1708T>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.*29A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.*29A>G
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12822
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3027
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2455
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 933
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

6-31132367-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132367
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132367
    reference: chr 6
allele count: 2
allele frequency: 4.519774011299435e-5
allele num: 44250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.*11C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.*11C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.*11C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1690G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.*11C>T
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 25829
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12044
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

6-31132391-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132391
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132391
    reference: chr 6
allele count: 1
allele frequency: 2.856979601165648e-5
allele num: 35002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.482T>A
  hgvsp: ENSP00000389359.2:p.Met161Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.482T>A
  hgvsp: ENSP00000425479.1:p.Met161Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.482T>A
  hgvsp: ENSP00000425083.1:p.Met161Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.1070T>A
  hgvsp: ENSP00000259915.7:p.Met357Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.482T>A
  hgvsp: ENSP00000475512.1:p.Met161Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1666A>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.560T>A
  hgvsp: ENSP00000475880.1:p.Met187Lys
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8037
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14930
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4982
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5267
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met357Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS

6-31132399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132399
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132399
    reference: chr 6
allele count: 1
allele frequency: 2.917663535041139e-5
allele num: 34274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1658G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.474C>T
  hgvsp: ENST00000513407.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.474C>T
  hgvsp: ENST00000471529.2:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.1062C>T
  hgvsp: ENST00000259915.8:c.1062C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.474C>T
  hgvsp: ENST00000512818.1:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.552C>T
  hgvsp: ENST00000606567.1:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.474C>T
  hgvsp: ENST00000441888.3:c.474C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20388
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly354Gly
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-31132406-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132406
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132406
    reference: chr 6
allele count: 2
allele frequency: 5.784024524263983e-5
allele num: 34578
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.467C>G
  hgvsp: ENSP00000389359.2:p.Thr156Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.545C>G
  hgvsp: ENSP00000475880.1:p.Thr182Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1651G>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.467C>G
  hgvsp: ENSP00000475512.1:p.Thr156Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.1055C>G
  hgvsp: ENSP00000259915.7:p.Thr352Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.467C>G
  hgvsp: ENSP00000425479.1:p.Thr156Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.467C>G
  hgvsp: ENSP00000425083.1:p.Thr156Ser
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14393
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21016
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4985
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4460
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4698
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr352Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

6-31132414-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132414
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132414
    reference: chr 6
allele count: 29319
allele frequency: 6.585875376252303e-1
allele num: 44518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.459C>T
  hgvsp: ENST00000471529.2:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.459C>T
  hgvsp: ENST00000513407.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1643G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.459C>T
  hgvsp: ENST00000512818.1:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.1047C>T
  hgvsp: ENST00000259915.8:c.1047C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.537C>T
  hgvsp: ENST00000606567.1:c.537C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.459C>T
  hgvsp: ENST00000441888.3:c.459C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.25e1
  variant carriers: 160
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 6.75e1
  variant carriers: 452
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.75e1
  variant carriers: 837
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 6.25e1
  variant carriers: 640
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.75e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 2.5e0
  variant carriers: 3892
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 1.25e1
  variant carriers: 10649
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 653
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 811
genotype depth: GenotypeDepth
  all individuals: 26756
  bin: 7.5e0
  variant carriers: 19600
genotype depth: GenotypeDepth
  all individuals: 2409
  bin: 1.75e1
  variant carriers: 2306
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 2.25e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 752
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.25e1
  variant carriers: 522
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.75e1
  variant carriers: 379
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.75e1
  variant carriers: 744
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 333
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 5.25e1
  variant carriers: 763
genotype quality: GenotypeQuality
  all individuals: 5784
  bin: 2.5e0
  variant carriers: 267
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 8.75e1
  variant carriers: 696
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 7.75e1
  variant carriers: 967
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 1.25e1
  variant carriers: 2430
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 2.75e1
  variant carriers: 2140
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 8.25e1
  variant carriers: 827
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 5.75e1
  variant carriers: 728
genotype quality: GenotypeQuality
  all individuals: 1197
  bin: 6.75e1
  variant carriers: 1144
hgvs: p.Ser349Ser
num of homozygotes: 9127
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

6-31132422-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132422
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132422
    reference: chr 6
allele count: 1
allele frequency: 3.121098626716604e-5
allele num: 32040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.529C>T
  hgvsp: ENSP00000475880.1:p.Pro177Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1635G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.451C>T
  hgvsp: ENSP00000389359.2:p.Pro151Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.451C>T
  hgvsp: ENSP00000475512.1:p.Pro151Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.1039C>T
  hgvsp: ENSP00000259915.7:p.Pro347Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.451C>T
  hgvsp: ENSP00000425479.1:p.Pro151Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.451C>T
  hgvsp: ENSP00000425083.1:p.Pro151Ser
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 26125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16998
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7109
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2946
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro347Ser
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

6-31132423-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132423
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132423
    reference: chr 6
allele count: 1
allele frequency: 3.14070351758794e-5
allele num: 31840
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.450C>A
  hgvsp: ENST00000441888.3:c.450C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.450C>A
  hgvsp: ENST00000512818.1:c.450C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.528C>A
  hgvsp: ENST00000606567.1:c.528C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.450C>A
  hgvsp: ENST00000471529.2:c.450C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.1038C>A
  hgvsp: ENST00000259915.8:c.1038C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1634G>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.450C>A
  hgvsp: ENST00000513407.1:c.450C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 17212
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25985
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2973
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro346Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-31132441-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132441
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132441
    reference: chr 6
allele count: 1
allele frequency: 3.484806244772791e-5
allele num: 28696
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.432T>G
  hgvsp: ENST00000441888.3:c.432T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.432T>G
  hgvsp: ENST00000471529.2:c.432T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.1020T>G
  hgvsp: ENST00000259915.8:c.1020T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.510T>G
  hgvsp: ENST00000606567.1:c.510T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1616A>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.432T>G
  hgvsp: ENST00000513407.1:c.432T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.432T>G
  hgvsp: ENST00000512818.1:c.432T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5727
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5583
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18850
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20175
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro340Pro
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-31132453-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132453
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132453
    reference: chr 6
allele count: 1
allele frequency: 3.8028597505324e-5
allele num: 26296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.420G>A
  hgvsp: ENST00000512818.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.420G>A
  hgvsp: ENST00000471529.2:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.420G>A
  hgvsp: ENST00000441888.3:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.420G>A
  hgvsp: ENST00000513407.1:c.420G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1604C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.498G>A
  hgvsp: ENST00000606567.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.1008G>A
  hgvsp: ENST00000259915.8:c.1008G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21479
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16516
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser336Ser
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-31132454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132454
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132454
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 25972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.497C>T
  hgvsp: ENSP00000475880.1:p.Ser166Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.419C>T
  hgvsp: ENSP00000425083.1:p.Ser140Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.419C>T
  hgvsp: ENSP00000475512.1:p.Ser140Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.1007C>T
  hgvsp: ENSP00000259915.7:p.Ser336Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.419C>T
  hgvsp: ENSP00000389359.2:p.Ser140Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.419C>T
  hgvsp: ENSP00000425479.1:p.Ser140Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1603G>A
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21563
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23100
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16530
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser336Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-31132460-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132460
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132460
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 25470
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.413A>C
  hgvsp: ENSP00000475512.1:p.Tyr138Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.413A>C
  hgvsp: ENSP00000425083.1:p.Tyr138Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.1001A>C
  hgvsp: ENSP00000259915.7:p.Tyr334Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1597T>G
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.413A>C
  hgvsp: ENSP00000389359.2:p.Tyr138Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.413A>C
  hgvsp: ENSP00000425479.1:p.Tyr138Ser
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.491A>C
  hgvsp: ENSP00000475880.1:p.Tyr164Ser
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23203
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21447
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1181
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3606
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5583
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr334Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-31132488-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132488
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132488
    reference: chr 6
allele count: 1
allele frequency: 3.716919417187035e-5
allele num: 26904
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.973T>G
  hgvsp: ENSP00000259915.7:p.Tyr325Asp
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1569A>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.385T>G
  hgvsp: ENSP00000425479.1:p.Tyr129Asp
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.385T>G
  hgvsp: ENSP00000425083.1:p.Tyr129Asp
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.463T>G
  hgvsp: ENSP00000475880.1:p.Tyr155Asp
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.385T>G
  hgvsp: ENSP00000475512.1:p.Tyr129Asp
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.385T>G
  hgvsp: ENSP00000389359.2:p.Tyr129Asp
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17510
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr325Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

6-31132495-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132495
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132495
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 29326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.456C>G
  hgvsp: ENST00000606567.1:c.456C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.378C>G
  hgvsp: ENST00000471529.2:c.378C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.966C>G
  hgvsp: ENST00000259915.8:c.966C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1562G>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.378C>G
  hgvsp: ENST00000513407.1:c.378C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.378C>G
  hgvsp: ENST00000512818.1:c.378C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.378C>G
  hgvsp: ENST00000441888.3:c.378C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31250
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12858
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12772
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1092
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5587
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr322Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

6-31132510-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132510
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132510
    reference: chr 6
allele count: 1
allele frequency: 2.651254043162416e-5
allele num: 37718
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.951G>A
  hgvsp: ENST00000259915.8:c.951G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.363G>A
  hgvsp: ENST00000471529.2:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.363G>A
  hgvsp: ENST00000441888.3:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.441G>A
  hgvsp: ENST00000606567.1:c.441G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.363G>A
  hgvsp: ENST00000513407.1:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1547C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.363G>A
  hgvsp: ENST00000512818.1:c.363G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5347
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1431
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35477
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly317Gly
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-31132542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132542
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132542
    reference: chr 6
allele count: 1
allele frequency: 1.650110557407346e-5
allele num: 60602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.331G>A
  hgvsp: ENSP00000475512.1:p.Gly111Arg
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.331G>A
  hgvsp: ENSP00000425083.1:p.Gly111Arg
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.919G>A
  hgvsp: ENSP00000259915.7:p.Gly307Arg
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.331G>A
  hgvsp: ENSP00000425479.1:p.Gly111Arg
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.331G>A
  hgvsp: ENSP00000389359.2:p.Gly111Arg
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1515C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.409G>A
  hgvsp: ENSP00000475880.1:p.Gly137Arg
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6929
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29171
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly307Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

6-31132553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132553
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132553
    reference: chr 6
allele count: 1
allele frequency: 1.510209012927389e-5
allele num: 66216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.320C>T
  hgvsp: ENSP00000389359.2:p.Ser107Phe
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.320C>T
  hgvsp: ENSP00000475512.1:p.Ser107Phe
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1504G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.398C>T
  hgvsp: ENSP00000475880.1:p.Ser133Phe
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.908C>T
  hgvsp: ENSP00000259915.7:p.Ser303Phe
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.320C>T
  hgvsp: ENSP00000425083.1:p.Ser107Phe
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.320C>T
  hgvsp: ENSP00000425479.1:p.Ser107Phe
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7954
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5593
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27232
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser303Phe
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-31132566-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132566
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132566
    reference: chr 6
allele count: 1
allele frequency: 1.419688236463273e-5
allele num: 70438
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.895G>A
  hgvsp: ENSP00000259915.7:p.Glu299Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.307G>A
  hgvsp: ENSP00000389359.2:p.Glu103Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.307G>A
  hgvsp: ENSP00000425083.1:p.Glu103Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.307G>A
  hgvsp: ENSP00000425479.1:p.Glu103Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.307G>A
  hgvsp: ENSP00000475512.1:p.Glu103Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.385G>A
  hgvsp: ENSP00000475880.1:p.Glu129Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1491C>T
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10744
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu299Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD

6-31132577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132577
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132577
    reference: chr 6
allele count: 1
allele frequency: 1.348363087212124e-5
allele num: 74164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.296G>A
  hgvsp: ENSP00000389359.2:p.Arg99Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.884G>A
  hgvsp: ENSP00000259915.7:p.Arg295Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.374G>A
  hgvsp: ENSP00000475880.1:p.Arg125Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.296G>A
  hgvsp: ENSP00000425479.1:p.Arg99Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1480C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.296G>A
  hgvsp: ENSP00000425083.1:p.Arg99Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.296G>A
  hgvsp: ENSP00000475512.1:p.Arg99Gln
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5597
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10340
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23998
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg295Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

6-31132577-CGTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132577
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132574
    reference: chr 6
allele count: 2
allele frequency: 2.696726174424249e-5
allele num: 74164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.293_295delAAC
  hgvsp: ENSP00000425479.1:p.Gln98del
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.881_883delAAC
  hgvsp: ENSP00000259915.7:p.Gln294del
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.293_295delAAC
  hgvsp: ENSP00000389359.2:p.Gln98del
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.293_295delAAC
  hgvsp: ENSP00000475512.1:p.Gln98del
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.371_373delAAC
  hgvsp: ENSP00000475880.1:p.Gln124del
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.293_295delAAC
  hgvsp: ENSP00000425083.1:p.Gln98del
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1477_558-1475delTGT
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20988
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6446
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1272
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23998
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3267
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gln294del
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: CGTT
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

6-31132590-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132590
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132590
    reference: chr 6
allele count: 2
allele frequency: 2.522640700285058e-5
allele num: 79282
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.871G>A
  hgvsp: ENSP00000259915.7:p.Asp291Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.283G>A
  hgvsp: ENSP00000475512.1:p.Asp95Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.283G>A
  hgvsp: ENSP00000389359.2:p.Asp95Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.283G>A
  hgvsp: ENSP00000425479.1:p.Asp95Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.361G>A
  hgvsp: ENSP00000475880.1:p.Asp121Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.283G>A
  hgvsp: ENSP00000425083.1:p.Asp95Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1467C>T
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9695
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5597
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2628
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13319
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp291Asn
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP

6-31132591-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132591
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132591
    reference: chr 6
allele count: 3
allele frequency: 3.757232672895324e-5
allele num: 79846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.282C>T
  hgvsp: ENST00000513407.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.282C>T
  hgvsp: ENST00000512818.1:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.870C>T
  hgvsp: ENST00000259915.8:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1466G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.360C>T
  hgvsp: ENST00000606567.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.282C>T
  hgvsp: ENST00000471529.2:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.282C>T
  hgvsp: ENST00000441888.3:c.282C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6002
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14393
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14104
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21133
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3713
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser290Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

6-31132593-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132593
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132593
    reference: chr 6
allele count: 4
allele frequency: 4.919928169048732e-5
allele num: 81302
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.280A>G
  hgvsp: ENSP00000475512.1:p.Ser94Gly
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1464T>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.280A>G
  hgvsp: ENSP00000425083.1:p.Ser94Gly
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.280A>G
  hgvsp: ENSP00000389359.2:p.Ser94Gly
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.280A>G
  hgvsp: ENSP00000425479.1:p.Ser94Gly
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.868A>G
  hgvsp: ENSP00000259915.7:p.Ser290Gly
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.358A>G
  hgvsp: ENSP00000475880.1:p.Ser120Gly
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5673
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9456
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5599
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3028
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser290Gly
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

6-31132627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132627
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132627
    reference: chr 6
allele count: 1
allele frequency: 1.054318488529015e-5
allele num: 94848
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.834C>T
  hgvsp: ENST00000259915.8:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.246C>T
  hgvsp: ENST00000471529.2:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.324C>T
  hgvsp: ENST00000606567.1:c.324C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.246C>T
  hgvsp: ENST00000512818.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.246C>T
  hgvsp: ENST00000513407.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.246C>T
  hgvsp: ENST00000441888.3:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1430G>A
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23830
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe278Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

6-31132637-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132637
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132637
    reference: chr 6
allele count: 1
allele frequency: 1.043906716495814e-5
allele num: 95794
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.236G>A
  hgvsp: ENSP00000425479.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.824G>A
  hgvsp: ENSP00000259915.7:p.Arg275Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.236G>A
  hgvsp: ENSP00000389359.2:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.236G>A
  hgvsp: ENSP00000425083.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.314G>A
  hgvsp: ENSP00000475880.1:p.Arg105Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.236G>A
  hgvsp: ENSP00000475512.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1420C>T
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5609
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1027
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22307
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg275Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-31132643-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132643
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132643
    reference: chr 6
allele count: 5
allele frequency: 5.215178254792749e-5
allele num: 95874
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.818T>G
  hgvsp: ENSP00000259915.7:p.Val273Gly
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.308T>G
  hgvsp: ENSP00000475880.1:p.Val103Gly
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.230T>G
  hgvsp: ENSP00000425479.1:p.Val77Gly
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.230T>G
  hgvsp: ENSP00000425083.1:p.Val77Gly
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.230T>G
  hgvsp: ENSP00000475512.1:p.Val77Gly
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1414A>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.230T>G
  hgvsp: ENSP00000389359.2:p.Val77Gly
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 10066
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7554
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20864
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6682
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2473
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1747
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5614
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12114
  bin: 2.25e1
  variant carriers: 1
hgvs: p.Val273Gly
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-31132649-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132649
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132649
    reference: chr 6
allele count: 71490
allele frequency: 6.585662435285664e-1
allele num: 108554
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-5T>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-5T>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-5T>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1408A>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-5T>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-5T>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-5T>G
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 6.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 8069
  bin: 2.75e1
  variant carriers: 7197
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 7.5e0
  variant carriers: 1736
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 1.25e1
  variant carriers: 6414
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 3.75e1
  variant carriers: 1741
genotype depth: GenotypeDepth
  all individuals: 13068
  bin: 2.25e1
  variant carriers: 10771
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 5.25e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 11750
  bin: 1.75e1
  variant carriers: 11230
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.25e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.5e0
  variant carriers: 286
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 237
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.75e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 4.75e1
  variant carriers: 488
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 8.75e1
  variant carriers: 232
genotype depth: GenotypeDepth
  all individuals: 3892
  bin: 3.25e1
  variant carriers: 3644
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 4.25e1
  variant carriers: 838
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 9.75e1
  variant carriers: 4662
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 8.25e1
  variant carriers: 249
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 7.25e1
  variant carriers: 909
genotype quality: GenotypeQuality
  all individuals: 1511
  bin: 3.25e1
  variant carriers: 1200
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 1.75e1
  variant carriers: 508
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 2.25e1
  variant carriers: 681
genotype quality: GenotypeQuality
  all individuals: 911
  bin: 2.75e1
  variant carriers: 546
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.25e1
  variant carriers: 307
genotype quality: GenotypeQuality
  all individuals: 4780
  bin: 6.25e1
  variant carriers: 2198
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 8.75e1
  variant carriers: 637
genotype quality: GenotypeQuality
  all individuals: 1277
  bin: 5.75e1
  variant carriers: 1212
hgvs: c.817-5T>G
num of homozygotes: 23113
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

6-31132653-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132653
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132653
    reference: chr 6
allele count: 2
allele frequency: 1.898217573698297e-5
allele num: 105362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1404G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-9C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-9C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-9C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-9C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-9C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-9C>T
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6859
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18396
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2023
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27039
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 713
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

6-31132656-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132656
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132656
    reference: chr 6
allele count: 5293
allele frequency: 5.05868185641104e-2
allele num: 104632
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-12A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1401T>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-12A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-12A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-12A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-12A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-12A>G
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 3.25e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 2.25e1
  variant carriers: 1101
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 9.75e1
  variant carriers: 227
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 11165
  bin: 1.75e1
  variant carriers: 1422
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 18599
  bin: 1.25e1
  variant carriers: 1009
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 7.5e0
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.75e1
  variant carriers: 648
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 4.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 5.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 7.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 8.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 3.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 7096
  bin: 9.75e1
  variant carriers: 4853
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 2.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 2110
  bin: 6.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 4.25e1
  variant carriers: 11
num of homozygotes: 187
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

6-31132657-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132657
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132657
    reference: chr 6
allele count: 1
allele frequency: 9.639111659469464e-6
allele num: 103744
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-13C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-13C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-13C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-13C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1400G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-13C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-13C>T
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11978
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12051
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

6-31132658-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132658
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132658
    reference: chr 6
allele count: 1
allele frequency: 9.638368416994371e-6
allele num: 103752
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-14T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-14T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-14T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-14T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-14T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-14T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1399A>G
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11988
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32796
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: QD

6-31132670-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132670
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132670
    reference: chr 6
allele count: 1
allele frequency: 1.110272238752942e-5
allele num: 90068
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1387A>G
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-26T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-26T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-26T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-26T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-26T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-26T>C
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13944
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10224
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2876
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

6-31132676-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132676
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132676
    reference: chr 6
allele count: 705
allele frequency: 9.519051605411681e-3
allele num: 74062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-32A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-32A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-32A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-32A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-32A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-32A>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1381T>C
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 9.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 9860
  bin: 7.5e0
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 13106
  bin: 1.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 8.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 5189
  bin: 2.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 18675
  bin: 1.25e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 7.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2771
  bin: 9.75e1
  variant carriers: 673
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 16280
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 6.25e1
  variant carriers: 2
num of homozygotes: 13
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

6-31132680-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132680
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132680
    reference: chr 6
allele count: 1
allele frequency: 1.74361835681406e-5
allele num: 57352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-36T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-36T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-36T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1377A>G
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-36T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-36T>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-36T>C
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

6-31132689-T-TGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132689
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132691
    reference: chr 6
allele count: 46624
allele frequency: 6.282034007922607e-1
allele num: 74218
alternate allele: TGA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-47_229-46dupTC
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-47_229-46dupTC
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1365_558-1364dupGA
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-47_229-46dupTC
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-47_817-46dupTC
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-47_229-46dupTC
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-47_307-46dupTC
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.75e1
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 443
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.75e1
  variant carriers: 623
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 559
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 567
genotype depth: GenotypeDepth
  all individuals: 19944
  bin: 1.25e1
  variant carriers: 16623
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.25e1
  variant carriers: 324
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.25e1
  variant carriers: 527
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 9.75e1
  variant carriers: 617
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 6.25e1
  variant carriers: 636
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 2.75e1
  variant carriers: 623
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 7.75e1
  variant carriers: 444
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.25e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 8218
  bin: 1.75e1
  variant carriers: 6813
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 2.5e0
  variant carriers: 1415
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 3.25e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.75e1
  variant carriers: 229
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 6.75e1
  variant carriers: 610
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 2.25e1
  variant carriers: 1948
genotype depth: GenotypeDepth
  all individuals: 17352
  bin: 7.5e0
  variant carriers: 13594
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 8.25e1
  variant carriers: 150
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 6.75e1
  variant carriers: 514
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 2.5e0
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 6.25e1
  variant carriers: 460
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 7.5e0
  variant carriers: 730
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 2.75e1
  variant carriers: 3585
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 1.75e1
  variant carriers: 2102
genotype quality: GenotypeQuality
  all individuals: 3365
  bin: 3.25e1
  variant carriers: 2525
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 1.25e1
  variant carriers: 1407
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 5.75e1
  variant carriers: 730
num of homozygotes: 14592
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-31132694-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132694
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132694
    reference: chr 6
allele count: 6
allele frequency: 8.81704628949302e-5
allele num: 68050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-50G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-50G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1363C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-50G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-50G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-50G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-50G>A
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19020
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19043
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6863
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2515
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13119
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7510
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

6-31132695-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132695
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132695
    reference: chr 6
allele count: 1
allele frequency: 1.457301078402798e-5
allele num: 68620
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.817-51C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.229-51C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.307-51C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.229-51C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.229-51C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.229-51C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1362G>A
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18961
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3626
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6984
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7788
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5028
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD

6-31132858-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132858
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132858
    reference: chr 6
allele count: 1
allele frequency: 1.393339835585899e-5
allele num: 71770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.228+47C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.816+47C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.228+47C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1199G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.306+47C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.228+47C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.228+47C>T
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17910
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15867
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2266
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4689
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5418
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

6-31132859-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132859
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132859
    reference: chr 6
allele count: 1
allele frequency: 1.389274798555154e-5
allele num: 71980
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.228+46C>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.228+46C>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.306+46C>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.228+46C>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.228+46C>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1198G>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.816+46C>A
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6507
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6856
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5445
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3338
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

6-31132863-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132863
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132863
    reference: chr 6
allele count: 1
allele frequency: 1.388657445981225e-5
allele num: 72012
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1194C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.228+42G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.228+42G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.228+42G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.816+42G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.228+42G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.306+42G>A
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17911
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5734
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18937
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3701
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6856
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-31132867-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132867
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132867
    reference: chr 6
allele count: 2
allele frequency: 2.758620689655172e-5
allele num: 72500
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.228+38C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.816+38C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.306+38C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.228+38C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1190G>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.228+38C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.228+38C>G
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5088
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2517
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7076
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

6-31132883-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132883
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132883
    reference: chr 6
allele count: 1
allele frequency: 1.25862155767004e-5
allele num: 79452
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.816+22G>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.306+22G>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.228+22G>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.228+22G>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.228+22G>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1174C>G
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.228+22G>C
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16091
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15356
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3807
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

6-31132883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132883
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132883
    reference: chr 6
allele count: 11804
allele frequency: 1.485676886673715e-1
allele num: 79452
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.816+22G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.228+22G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.228+22G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1174C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.228+22G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.306+22G>A
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.228+22G>A
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2193
  bin: 2.5e0
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 1.75e1
  variant carriers: 3091
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 2.75e1
  variant carriers: 552
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 5.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 9.75e1
  variant carriers: 1037
genotype depth: GenotypeDepth
  all individuals: 16091
  bin: 7.5e0
  variant carriers: 1874
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 2.25e1
  variant carriers: 1458
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 8.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 6.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 3.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 4.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 16301
  bin: 1.25e1
  variant carriers: 4047
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.25e1
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 7.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 1.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 4.75e1
  variant carriers: 157
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.75e1
  variant carriers: 197
genotype quality: GenotypeQuality
  all individuals: 2579
  bin: 3.75e1
  variant carriers: 163
genotype quality: GenotypeQuality
  all individuals: 14956
  bin: 2.25e1
  variant carriers: 169
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 5.25e1
  variant carriers: 189
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.25e1
  variant carriers: 241
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 4625
  bin: 3.25e1
  variant carriers: 171
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 7.5e0
  variant carriers: 71
num of homozygotes: 770
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

6-31132884-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132884
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132884
    reference: chr 6
allele count: 10
allele frequency: 1.250531475877248e-4
allele num: 79966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.228+21C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.228+21C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.306+21C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.228+21C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.228+21C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.816+21C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1173G>A
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16621
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15953
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9172
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2173
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18247
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1507
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

6-31132897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132897
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132897
    reference: chr 6
allele count: 1
allele frequency: 1.210272795488103e-5
allele num: 82626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.228+8C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.228+8C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.306+8C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.228+8C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.816+8C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.228+8C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1160G>A
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15984
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4793
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18575
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14272
  bin: 6.25e1
  variant carriers: 0
hgvs: c.816+8C>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

6-31132910-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132910
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132910
    reference: chr 6
allele count: 1
allele frequency: 1.179606954962606e-5
allele num: 84774
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1147T>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.223A>G
  hgvsp: ENSP00000475512.1:p.Lys75Glu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.811A>G
  hgvsp: ENSP00000259915.7:p.Lys271Glu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.223A>G
  hgvsp: ENSP00000425083.1:p.Lys75Glu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.301A>G
  hgvsp: ENSP00000475880.1:p.Lys101Glu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.223A>G
  hgvsp: ENSP00000389359.2:p.Lys75Glu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.223A>G
  hgvsp: ENSP00000425479.1:p.Lys75Glu
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15219
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6757
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4026
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15007
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys271Glu
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD

6-31132913-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132913
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132913
    reference: chr 6
allele count: 2
allele frequency: 2.35599010484156e-5
allele num: 84890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.220G>A
  hgvsp: ENSP00000475512.1:p.Glu74Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.220G>A
  hgvsp: ENSP00000425083.1:p.Glu74Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.298G>A
  hgvsp: ENSP00000475880.1:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.220G>A
  hgvsp: ENSP00000389359.2:p.Glu74Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.220G>A
  hgvsp: ENSP00000425479.1:p.Glu74Lys
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1144C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.808G>A
  hgvsp: ENSP00000259915.7:p.Glu270Lys
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12423
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15492
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18030
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4448
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1611
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4019
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu270Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

6-31132914-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132914
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132914
    reference: chr 6
allele count: 2
allele frequency: 2.345600825651491e-5
allele num: 85266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.219C>T
  hgvsp: ENST00000441888.3:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.219C>T
  hgvsp: ENST00000471529.2:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1143G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.807C>T
  hgvsp: ENST00000259915.8:c.807C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.297C>T
  hgvsp: ENST00000606567.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.219C>T
  hgvsp: ENST00000512818.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.219C>T
  hgvsp: ENST00000513407.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14846
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15864
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12269
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1607
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2232
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17980
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu269Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

6-31132932-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132932
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132932
    reference: chr 6
allele count: 1
allele frequency: 1.146631197541623e-5
allele num: 87212
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1125G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.201C>T
  hgvsp: ENST00000513407.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.201C>T
  hgvsp: ENST00000471529.2:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.279C>T
  hgvsp: ENST00000606567.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.201C>T
  hgvsp: ENST00000512818.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.201C>T
  hgvsp: ENST00000441888.3:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.789C>T
  hgvsp: ENST00000259915.8:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13538
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4841
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6759
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12584
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile263Ile
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

6-31132939-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132939
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132939
    reference: chr 6
allele count: 1
allele frequency: 1.136828702651085e-5
allele num: 87964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.194G>A
  hgvsp: ENSP00000425083.1:p.Ser65Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.194G>A
  hgvsp: ENSP00000475512.1:p.Ser65Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.194G>A
  hgvsp: ENSP00000425479.1:p.Ser65Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.782G>A
  hgvsp: ENSP00000259915.7:p.Ser261Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.272G>A
  hgvsp: ENSP00000475880.1:p.Ser91Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.194G>A
  hgvsp: ENSP00000389359.2:p.Ser65Asn
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1118C>T
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12635
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4878
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12848
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1405
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17543
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser261Asn
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

6-31132950-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132950
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132950
    reference: chr 6
allele count: 2
allele frequency: 2.25504566467471e-5
allele num: 88690
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.771G>A
  hgvsp: ENST00000259915.8:c.771G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.183G>A
  hgvsp: ENST00000512818.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.261G>A
  hgvsp: ENST00000606567.1:c.261G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.183G>A
  hgvsp: ENST00000471529.2:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.183G>A
  hgvsp: ENST00000441888.3:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1107C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.183G>A
  hgvsp: ENST00000513407.1:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12825
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7905
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12633
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17585
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6764
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu257Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

6-31132956-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132956
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132956
    reference: chr 6
allele count: 10501
allele frequency: 1.14807688102683e-1
allele num: 91466
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.177C>G
  hgvsp: ENST00000471529.2:c.177C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.177C>G
  hgvsp: ENST00000513407.1:c.177C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.177C>G
  hgvsp: ENST00000441888.3:c.177C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.255C>G
  hgvsp: ENST00000606567.1:c.255C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.177C>G
  hgvsp: ENST00000512818.1:c.177C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1101G>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.765C>G
  hgvsp: ENST00000259915.8:c.765C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 2.75e1
  variant carriers: 830
genotype depth: GenotypeDepth
  all individuals: 13052
  bin: 1.25e1
  variant carriers: 2148
genotype depth: GenotypeDepth
  all individuals: 11394
  bin: 7.5e0
  variant carriers: 503
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 9.75e1
  variant carriers: 1247
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 5.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 4.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 4.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 7.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 10261
  bin: 1.75e1
  variant carriers: 2977
genotype depth: GenotypeDepth
  all individuals: 11104
  bin: 2.25e1
  variant carriers: 1977
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.25e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 2.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 5.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 8.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 5.75e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 717
  bin: 1.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 2.5e0
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.25e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 14646
  bin: 2.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 4.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 2.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 4.75e1
  variant carriers: 111
hgvs: p.Pro255Pro
num of homozygotes: 535
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

6-31132962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132962
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132962
    reference: chr 6
allele count: 2
allele frequency: 2.217049107637734e-5
allele num: 90210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.171G>A
  hgvsp: ENST00000441888.3:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.171G>A
  hgvsp: ENST00000513407.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.171G>A
  hgvsp: ENST00000471529.2:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.249G>A
  hgvsp: ENST00000606567.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1095C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.171G>A
  hgvsp: ENST00000512818.1:c.171G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.759G>A
  hgvsp: ENST00000259915.8:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13851
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9966
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3988
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6659
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9656
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro253Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-31132977-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132977
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132977
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 92018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1080C>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.156G>T
  hgvsp: ENSP00000475512.1:p.Leu52Phe
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.156G>T
  hgvsp: ENSP00000425083.1:p.Leu52Phe
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.234G>T
  hgvsp: ENSP00000475880.1:p.Leu78Phe
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.156G>T
  hgvsp: ENSP00000389359.2:p.Leu52Phe
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.744G>T
  hgvsp: ENSP00000259915.7:p.Leu248Phe
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.156G>T
  hgvsp: ENSP00000425479.1:p.Leu52Phe
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7724
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1257
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13750
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6656
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu248Phe
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

6-31132992-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31132992
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31132992
    reference: chr 6
allele count: 1
allele frequency: 1.066393669887175e-5
allele num: 93774
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.729C>T
  hgvsp: ENST00000259915.8:c.729C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1065G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.141C>T
  hgvsp: ENST00000512818.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.219C>T
  hgvsp: ENST00000606567.1:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.141C>T
  hgvsp: ENST00000471529.2:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.141C>T
  hgvsp: ENST00000513407.1:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.141C>T
  hgvsp: ENST00000441888.3:c.141C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10998
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3832
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15645
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3357
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly243Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD

6-31133001-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133001
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133001
    reference: chr 6
allele count: 1
allele frequency: 1.054251797499315e-5
allele num: 94854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.132A>T
  hgvsp: ENST00000513407.1:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.132A>T
  hgvsp: ENST00000441888.3:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.720A>T
  hgvsp: ENST00000259915.8:c.720A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.132A>T
  hgvsp: ENST00000512818.1:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.210A>T
  hgvsp: ENST00000606567.1:c.210A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.132A>T
  hgvsp: ENST00000471529.2:c.132A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1056T>A
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10262
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1352
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg240Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

6-31133002-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133002
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133002
    reference: chr 6
allele count: 2
allele frequency: 2.111843216759588e-5
allele num: 94704
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.209G>A
  hgvsp: ENSP00000475880.1:p.Arg70Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.131G>A
  hgvsp: ENSP00000389359.2:p.Arg44Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1055C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.131G>A
  hgvsp: ENSP00000425479.1:p.Arg44Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.131G>A
  hgvsp: ENSP00000475512.1:p.Arg44Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.131G>A
  hgvsp: ENSP00000425083.1:p.Arg44Gln
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.719G>A
  hgvsp: ENSP00000259915.7:p.Arg240Gln
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20035
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10464
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14910
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg240Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-31133010-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133010
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133010
    reference: chr 6
allele count: 2
allele frequency: 2.094811152774577e-5
allele num: 95474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.123C>T
  hgvsp: ENST00000441888.3:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.123C>T
  hgvsp: ENST00000512818.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.711C>T
  hgvsp: ENST00000259915.8:c.711C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1047G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.123C>T
  hgvsp: ENST00000471529.2:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.201C>T
  hgvsp: ENST00000606567.1:c.201C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.123C>T
  hgvsp: ENST00000513407.1:c.123C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 979
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1194
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22785
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ile237Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-31133037-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133037
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133037
    reference: chr 6
allele count: 1
allele frequency: 1.048833696929015e-5
allele num: 95344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.96G>A
  hgvsp: ENST00000512818.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.96G>A
  hgvsp: ENST00000471529.2:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.96G>A
  hgvsp: ENST00000513407.1:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.684G>A
  hgvsp: ENST00000259915.8:c.684G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1020C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.96G>A
  hgvsp: ENST00000441888.3:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.174G>A
  hgvsp: ENST00000606567.1:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9773
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21194
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10179
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23124
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1655
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2397
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln228Gln
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ

6-31133042-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133042
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133042
    reference: chr 6
allele count: 2
allele frequency: 2.111174446344501e-5
allele num: 94734
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.169G>C
  hgvsp: ENSP00000475880.1:p.Val57Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.91G>C
  hgvsp: ENSP00000389359.2:p.Val31Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.679G>C
  hgvsp: ENSP00000259915.7:p.Val227Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.91G>C
  hgvsp: ENSP00000425083.1:p.Val31Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1015C>G
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.91G>C
  hgvsp: ENSP00000475512.1:p.Val31Leu
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.91G>C
  hgvsp: ENSP00000425479.1:p.Val31Leu
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2499
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6660
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val227Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

6-31133042-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133042
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133042
    reference: chr 6
allele count: 3
allele frequency: 3.166761669516752e-5
allele num: 94734
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1015C>T
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.91G>A
  hgvsp: ENSP00000475512.1:p.Val31Met
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.91G>A
  hgvsp: ENSP00000425479.1:p.Val31Met
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.679G>A
  hgvsp: ENSP00000259915.7:p.Val227Met
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.169G>A
  hgvsp: ENSP00000475880.1:p.Val57Met
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.91G>A
  hgvsp: ENSP00000425083.1:p.Val31Met
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.91G>A
  hgvsp: ENSP00000389359.2:p.Val31Met
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10331
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2829
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20282
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2661
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6660
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val227Met
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum

6-31133043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133043
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133043
    reference: chr 6
allele count: 1
allele frequency: 1.060490370747434e-5
allele num: 94296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.90C>T
  hgvsp: ENST00000471529.2:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.90C>T
  hgvsp: ENST00000512818.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.678C>T
  hgvsp: ENST00000259915.8:c.678C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.90C>T
  hgvsp: ENST00000513407.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.168C>T
  hgvsp: ENST00000606567.1:c.168C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.90C>T
  hgvsp: ENST00000441888.3:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-1014G>A
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21202
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu226Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

6-31133067-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133067
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133067
    reference: chr 6
allele count: 3
allele frequency: 3.338823843654009e-5
allele num: 89852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.70-4A>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.70-4A>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.70-4A>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.70-4A>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.148-4A>C
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-990T>G
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.658-4A>C
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1810
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12428
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20854
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6658
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1942
  bin: 3.75e1
  variant carriers: 0
hgvs: c.658-4A>C
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

6-31133080-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133080
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133080
    reference: chr 6
allele count: 1
allele frequency: 1.151834872952614e-5
allele num: 86818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.70-17C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-977G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.70-17C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.70-17C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.658-17C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.70-17C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.148-17C>T
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

6-31133080-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133080
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133080
    reference: chr 6
allele count: 1
allele frequency: 1.151834872952614e-5
allele num: 86818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.70-17C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.70-17C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.70-17C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.658-17C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.70-17C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.148-17C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-977G>C
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8027
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19282
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13077
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8545
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22004
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4775
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5200
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6657
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-31133081-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133081
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133081
    reference: chr 6
allele count: 2
allele frequency: 2.302449806594216e-5
allele num: 86864
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.148-18C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.70-18C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.70-18C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.70-18C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-976G>C
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.658-18C>G
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.70-18C>G
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19320
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5192
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8077
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8838
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4767
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

6-31133112-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133112
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133112
    reference: chr 6
allele count: 3
allele frequency: 3.824969400244798e-5
allele num: 78432
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.70-49C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.658-49C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.70-49C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.70-49C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.70-49C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.148-49C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-945G>A
  variant of: http://identifiers.org/hgnc/11629
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18148
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6655
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3923
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 8.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

6-31133315-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 31133315
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 31133315
    reference: chr 6
allele count: 1
allele frequency: 8.576329331046313e-6
allele num: 116600
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475880
  ensembl transcript: ENST00000606567
  gene symbol: POU5F1
  hgvsc: ENST00000606567.1:c.147+33C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425083
  ensembl transcript: ENST00000471529
  gene symbol: POU5F1
  hgvsc: ENST00000471529.2:c.69+33C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000389359
  ensembl transcript: ENST00000441888
  gene symbol: POU5F1
  hgvsc: ENST00000441888.3:c.69+33C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000259915
  ensembl transcript: ENST00000259915
  gene symbol: POU5F1
  hgvsc: ENST00000259915.8:c.657+33C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000475512
  ensembl transcript: ENST00000513407
  gene symbol: POU5F1
  hgvsc: ENST00000513407.1:c.69+33C>T
  variant of: http://identifiers.org/hgnc/9221
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137310
  ensembl protein: ENSP00000439397
  ensembl transcript: ENST00000542218
  gene symbol: TCF19
  hgvsc: ENST00000542218.1:c.558-742G>A
  variant of: http://identifiers.org/hgnc/11629
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204531
  ensembl protein: ENSP00000425479
  ensembl transcript: ENST00000512818
  gene symbol: POU5F1
  hgvsc: ENST00000512818.1:c.69+33C>T
  variant of: http://identifiers.org/hgnc/9221
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 309
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 499
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9912
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3972
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2822
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

QD
type: SiteQuality
SIO_000300: 3.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.62e-1

MQ
type: SiteQuality
SIO_000300: 3.38e1

VQSLOD
type: SiteQuality
SIO_000300: -3.718e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.77e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.62e-1

DP
type: SiteQuality
SIO_000300: 8.39602e5

GenotypeQuality
all individuals: 414
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1622
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3069
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28873
bin: 2.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2806
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3444
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.449e1

VQSLOD
type: SiteQuality
SIO_000300: -2.767e0

DP
type: SiteQuality
SIO_000300: 8.36e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 3.745e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 2495
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2061
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4983
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24416
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.023541453428864e-4
allele num: 9770
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.755e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

DP
type: SiteQuality
SIO_000300: 8.21211e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.634e0

MQ
type: SiteQuality
SIO_000300: 3.692e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.96e-2

QD
type: SiteQuality
SIO_000300: 2.725e1

GenotypeQuality
all individuals: 323
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4983
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 29256
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2452
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3676
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.025220422390814e-4
allele num: 9754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3210
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2650
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.97e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

MQ
type: SiteQuality
SIO_000300: 3.603e1

QD
type: SiteQuality
SIO_000300: 2.214e1

FS
type: SiteQuality
SIO_000300: 7.207e0

VQSLOD
type: SiteQuality
SIO_000300: 7.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

DP
type: SiteQuality
SIO_000300: 8.19394e5

GenotypeQuality
all individuals: 499
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8819
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4983
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.787878787878788e-4
allele num: 2640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3912
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 24168
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 4.276e1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.854e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.34e0

DP
type: SiteQuality
SIO_000300: 8.16748e5

GenotypeQuality
all individuals: 27618
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11006
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4985
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2882
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 5.509641873278236e-4
allele num: 3630
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22130
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.758e0

MQ
type: SiteQuality
SIO_000300: 2.959e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.38e-2

FS
type: SiteQuality
SIO_000300: 2.953e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 5.35e0

DP
type: SiteQuality
SIO_000300: 7.87652e5

GenotypeQuality
all individuals: 19215
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2351
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14855
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.912363067292645e-4
allele num: 2556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1684
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1834
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.08e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.104e0

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

MQ
type: SiteQuality
SIO_000300: 3.081e1

DP
type: SiteQuality
SIO_000300: 7.30675e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 4842
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4492
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14741
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4984
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.106497313141182e-5
allele num: 16376
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.093e0

FS
type: SiteQuality
SIO_000300: 3.512e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.04e-2

DP
type: SiteQuality
SIO_000300: 7.28476e5

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

MQ
type: SiteQuality
SIO_000300: 3.31e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.51e-1

GenotypeQuality
all individuals: 923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14446
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1770
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 312
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.255808707421611e-4
allele num: 8866
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.859e1

QD
type: SiteQuality
SIO_000300: 1.523e1

MQRankSum
type: SiteQuality
SIO_000300: -2.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

DP
type: SiteQuality
SIO_000300: 7.34244e5

VQSLOD
type: SiteQuality
SIO_000300: -4.565e0

GenotypeQuality
all individuals: 4158
bin: 7.5e0
variant carriers: 1751

GenotypeQuality
all individuals: 1094
bin: 7.25e1
variant carriers: 1052

GenotypeQuality
all individuals: 1851
bin: 3.75e1
variant carriers: 1820

GenotypeQuality
all individuals: 5650
bin: 1.75e1
variant carriers: 5175

GenotypeQuality
all individuals: 927
bin: 9.25e1
variant carriers: 867

GenotypeQuality
all individuals: 8014
bin: 2.25e1
variant carriers: 4821

GenotypeQuality
all individuals: 997
bin: 4.75e1
variant carriers: 987

GenotypeQuality
all individuals: 964
bin: 6.25e1
variant carriers: 773

GenotypeQuality
all individuals: 3030
bin: 3.25e1
variant carriers: 2913

GenotypeQuality
all individuals: 13538
bin: 9.75e1
variant carriers: 12842

GenotypeQuality
all individuals: 1020
bin: 4.25e1
variant carriers: 1012

East Asian
type: Population
allele count: 2126
allele frequency: 6.656230432060113e-1
allele num: 3194
num of homozygotes: 677

European (Finnish)
type: Population
allele count: 1522
allele frequency: 6.253081347576006e-1
allele num: 2434
num of homozygotes: 432

Other
type: Population
allele count: 224
allele frequency: 5.957446808510638e-1
allele num: 376
num of homozygotes: 63

South Asian
type: Population
allele count: 5602
allele frequency: 5.824495737159493e-1
allele num: 9618
num of homozygotes: 1561

European (Non-Finnish)
type: Population
allele count: 15304
allele frequency: 6.763899938124281e-1
allele num: 22626
num of homozygotes: 4834

African
type: Population
allele count: 2915
allele frequency: 7.921195652173914e-1
allele num: 3680
num of homozygotes: 1122

Latino
type: Population
allele count: 1626
allele frequency: 6.277992277992278e-1
allele num: 2590
num of homozygotes: 438

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.483e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

DP
type: SiteQuality
SIO_000300: 8.37444e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 2.151e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.06e-1

MQ
type: SiteQuality
SIO_000300: 2.826e1

VQSLOD
type: SiteQuality
SIO_000300: 5.64e0

GenotypeQuality
all individuals: 5584
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 578
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23712
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
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variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
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variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.693440428380188e-5
allele num: 14940
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8762
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

QD
type: SiteQuality
SIO_000300: 1.274e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.297e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.386e0

MQ
type: SiteQuality
SIO_000300: 2.876e1

DP
type: SiteQuality
SIO_000300: 7.42673e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 1170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3651
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 103
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GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 607
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GenotypeQuality
all individuals: 16720
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GenotypeQuality
all individuals: 1198
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variant carriers: 0

GenotypeQuality
all individuals: 184
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5584
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.736728644570196e-5
allele num: 14844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1454
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.842e1

VQSLOD
type: SiteQuality
SIO_000300: -5.015e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.25e-2

DP
type: SiteQuality
SIO_000300: 7.40781e5

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 1.089e1

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3958
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
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variant carriers: 0

GenotypeQuality
all individuals: 197
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variant carriers: 0

GenotypeQuality
all individuals: 181
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variant carriers: 0

GenotypeQuality
all individuals: 3667
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1822
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

QD
type: SiteQuality
SIO_000300: 3.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.915e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 7.09215e5

MQ
type: SiteQuality
SIO_000300: 2.866e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.05e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 20907
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 303
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variant carriers: 0

GenotypeQuality
all individuals: 4494
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variant carriers: 0

GenotypeQuality
all individuals: 5579
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variant carriers: 0

GenotypeQuality
all individuals: 3799
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variant carriers: 0

GenotypeQuality
all individuals: 1213
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 8.25e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 1.183712121212121e-4
allele num: 8448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 980
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1440
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 2.803e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.90465e5

VQSLOD
type: SiteQuality
SIO_000300: -5.148e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.39e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 4501
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 201
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GenotypeQuality
all individuals: 292
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GenotypeQuality
all individuals: 20934
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variant carriers: 0

GenotypeQuality
all individuals: 1692
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GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 354
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GenotypeQuality
all individuals: 5580
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variant carriers: 0

GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1408
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 2.779e1

VQSLOD
type: SiteQuality
SIO_000300: -4.691e0

DP
type: SiteQuality
SIO_000300: 6.88266e5

BaseQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 4.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.35e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

GenotypeQuality
all individuals: 20848
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1759
bin: 2.5e0
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GenotypeQuality
all individuals: 303
bin: 9.25e1
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GenotypeQuality
all individuals: 336
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variant carriers: 1

GenotypeQuality
all individuals: 67
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variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4610
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1456
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 6.849e5

QD
type: SiteQuality
SIO_000300: 1.065e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.249e0

MQ
type: SiteQuality
SIO_000300: 2.957e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.41e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

GenotypeQuality
all individuals: 945
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1393
bin: 2.75e1
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GenotypeQuality
all individuals: 3161
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.25e1
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GenotypeQuality
all individuals: 372
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variant carriers: 0

GenotypeQuality
all individuals: 71
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GenotypeQuality
all individuals: 305
bin: 9.25e1
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GenotypeQuality
all individuals: 5586
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11714
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.188118811881188e-4
allele num: 1616
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 6.97e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 2.027e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.356e0

MQ
type: SiteQuality
SIO_000300: 3.341e1

VQSLOD
type: SiteQuality
SIO_000300: -4.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.58e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 7.17784e5

GenotypeQuality
all individuals: 1767
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 2.5e0
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
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GenotypeQuality
all individuals: 29920
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13158
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1964
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2260
num of homozygotes: 0

East Asian
type: Population
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South Asian
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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QD
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MQRankSum
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BaseQRankSum
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DP
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FS
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SIO_000300: 1.74e0

MQ
type: SiteQuality
SIO_000300: 3.364e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2898
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2558
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1740
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 5.469861065528935e-5
allele num: 18282
num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
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VQSLOD
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.33e-1

DP
type: SiteQuality
SIO_000300: 8.55048e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.44e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 32094
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4016
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South Asian
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East Asian
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allele count: 1
allele frequency: 2.27894257064722e-4
allele num: 4388
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3730
num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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FS
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QD
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MQRankSum
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BaseQRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 3.876e1

VQSLOD
type: SiteQuality
SIO_000300: -4.439e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.72e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 35418
num of homozygotes: 0

South Asian
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allele frequency: 8.762705923589205e-5
allele num: 11412
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 3.652e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: -5.1e-3

DP
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.68e-1

BaseQRankSum
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SIO_000300: -8.875999999999999e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 11702
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 37992
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 2.393489707994256e-4
allele num: 4178
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 4.145e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.48e0

FS
type: SiteQuality
SIO_000300: 2.748e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.59e-1

QD
type: SiteQuality
SIO_000300: 2.818e1

DP
type: SiteQuality
SIO_000300: 1.063854e6

VQSLOD
type: SiteQuality
SIO_000300: -1.834e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 5396
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 1.746419839329375e-4
allele num: 5726
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 610
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QD
type: SiteQuality
SIO_000300: 1.442e1

BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

InbreedingCoeff
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MQ
type: SiteQuality
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MQRankSum
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
allele num: 4362
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Latino
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.966969651815427e-5
allele num: 40266
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 5978
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Other
type: Population
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European (Non-Finnish)
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allele frequency: 2.3121387283237e-5
allele num: 43250
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East Asian
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Latino
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European (Finnish)
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South Asian
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VQSLOD
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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MQ
type: SiteQuality
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QD
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BaseQRankSum
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FS
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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African
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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allele frequency: 2.295473326599945e-5
allele num: 43564
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 6094
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East Asian
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European (Finnish)
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allele num: 4732
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Other
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South Asian
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European (Non-Finnish)
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Latino
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VQSLOD
type: SiteQuality
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FS
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1920
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5608
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52022
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6990
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.134816159782115e-4
allele num: 8812
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.53e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.113e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.89e-1

FS
type: SiteQuality
SIO_000300: 4.506e0

MQ
type: SiteQuality
SIO_000300: 5.361e1

VQSLOD
type: SiteQuality
SIO_000300: -2.122e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

DP
type: SiteQuality
SIO_000300: 1.281234e6

MQRankSum
type: SiteQuality
SIO_000300: -1.927e0

GenotypeQuality
all individuals: 308
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2382
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1133
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2932
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2182
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12742
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7316
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52566
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.120322652924042e-4
allele num: 8926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.485e0

QD
type: SiteQuality
SIO_000300: 6.89e0

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 4.984e1

DP
type: SiteQuality
SIO_000300: 1.287032e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

GenotypeQuality
all individuals: 1147
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 714
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 2425
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2156
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17641
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 7.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.606298014756218e-5
allele num: 52588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7322
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.415227851684121e-4
allele num: 7066
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.325e0

QD
type: SiteQuality
SIO_000300: 7.6e-1

FS
type: SiteQuality
SIO_000300: 1.2062e2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.906e1

MQ
type: SiteQuality
SIO_000300: 5.02e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.184e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.49e-1

DP
type: SiteQuality
SIO_000300: 1.290425e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

GenotypeQuality
all individuals: 2580
bin: 5.25e1
variant carriers: 2440

GenotypeQuality
all individuals: 861
bin: 2.5e0
variant carriers: 174

GenotypeQuality
all individuals: 1298
bin: 8.25e1
variant carriers: 1222

GenotypeQuality
all individuals: 628
bin: 7.5e0
variant carriers: 347

GenotypeQuality
all individuals: 2286
bin: 4.75e1
variant carriers: 2195

GenotypeQuality
all individuals: 1139
bin: 4.25e1
variant carriers: 1047

GenotypeQuality
all individuals: 30325
bin: 9.75e1
variant carriers: 29627

GenotypeQuality
all individuals: 1844
bin: 3.75e1
variant carriers: 1655

GenotypeQuality
all individuals: 1532
bin: 7.75e1
variant carriers: 1484

GenotypeQuality
all individuals: 2046
bin: 6.75e1
variant carriers: 1868

GenotypeQuality
all individuals: 943
bin: 9.25e1
variant carriers: 882

European (Finnish)
type: Population
allele count: 3633
allele frequency: 5.959645669291339e-1
allele num: 6096
num of homozygotes: 1057

East Asian
type: Population
allele count: 5326
allele frequency: 6.635933217044605e-1
allele num: 8026
num of homozygotes: 1715

Latino
type: Population
allele count: 6240
allele frequency: 6.051202482544609e-1
allele num: 10312
num of homozygotes: 1810

African
type: Population
allele count: 6825
allele frequency: 7.928671003717472e-1
allele num: 8608
num of homozygotes: 2675

European (Non-Finnish)
type: Population
allele count: 39881
allele frequency: 6.71940288448578e-1
allele num: 59352
num of homozygotes: 13080

Other
type: Population
allele count: 511
allele frequency: 6.293103448275862e-1
allele num: 812
num of homozygotes: 161

South Asian
type: Population
allele count: 9074
allele frequency: 5.912170966901225e-1
allele num: 15348
num of homozygotes: 2615

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.19e-2

FS
type: SiteQuality
SIO_000300: 5.669999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 5.082e1

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

QD
type: SiteQuality
SIO_000300: 2.407e1

DP
type: SiteQuality
SIO_000300: 1.922841e6

GenotypeQuality
all individuals: 1295
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 834
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14710
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2765
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.465844106332097e-5
allele num: 57706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14786
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5970
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.461555e6

MQ
type: SiteQuality
SIO_000300: 5.161e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

VQSLOD
type: SiteQuality
SIO_000300: -1.481e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

FS
type: SiteQuality
SIO_000300: 2.262e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.037e0

GenotypeQuality
all individuals: 28012
bin: 2.25e1
variant carriers: 23

GenotypeQuality
all individuals: 221
bin: 1.75e1
variant carriers: 18

GenotypeQuality
all individuals: 2427
bin: 7.5e0
variant carriers: 16

GenotypeQuality
all individuals: 360
bin: 9.25e1
variant carriers: 52

GenotypeQuality
all individuals: 498
bin: 7.25e1
variant carriers: 40

GenotypeQuality
all individuals: 595
bin: 7.75e1
variant carriers: 60

GenotypeQuality
all individuals: 12696
bin: 6.25e1
variant carriers: 36

GenotypeQuality
all individuals: 573
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 48

GenotypeQuality
all individuals: 454
bin: 8.25e1
variant carriers: 55

African
type: Population
allele count: 177
allele frequency: 2.179802955665025e-2
allele num: 8120
num of homozygotes: 3

East Asian
type: Population
allele count: 9
allele frequency: 1.144455747711089e-3
allele num: 7864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4370
allele frequency: 7.640394433177146e-2
allele num: 57196
num of homozygotes: 171

Other
type: Population
allele count: 30
allele frequency: 3.787878787878788e-2
allele num: 792
num of homozygotes: 0

Latino
type: Population
allele count: 243
allele frequency: 2.43535778713169e-2
allele num: 9978
num of homozygotes: 4

South Asian
type: Population
allele count: 174
allele frequency: 1.180461329715061e-2
allele num: 14740
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 290
allele frequency: 4.880511612251767e-2
allele num: 5942
num of homozygotes: 4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.88e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.161e0

MQ
type: SiteQuality
SIO_000300: 5.024e1

VQSLOD
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.81e-1

DP
type: SiteQuality
SIO_000300: 1.444172e6

QD
type: SiteQuality
SIO_000300: 1.542e1

GenotypeQuality
all individuals: 32554
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 265
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.00928542591845e-4
allele num: 9908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56688
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.423e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.2e-3

DP
type: SiteQuality
SIO_000300: 1.397781e6

QD
type: SiteQuality
SIO_000300: 1.205e1

MQRankSum
type: SiteQuality
SIO_000300: 1.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

FS
type: SiteQuality
SIO_000300: 6.456e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.12e-1

MQ
type: SiteQuality
SIO_000300: 5.468e1

GenotypeQuality
all individuals: 545
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3219
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1399
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2206
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12101
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8022
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.281394156842645e-4
allele num: 7804
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56712
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.756e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e0

MQRankSum
type: SiteQuality
SIO_000300: -2.117e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.395837e6

MQ
type: SiteQuality
SIO_000300: 5.042e1

QD
type: SiteQuality
SIO_000300: 1.086e1

GenotypeQuality
all individuals: 521
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.039068553484768e-5
allele num: 49042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13338
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.165e0

MQ
type: SiteQuality
SIO_000300: 5.449e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.14e0

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.056e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

DP
type: SiteQuality
SIO_000300: 1.313847e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.682e0

GenotypeQuality
all individuals: 1918
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 94
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 743
bin: 3.75e1
variant carriers: 4

GenotypeQuality
all individuals: 165
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1270
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 319
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 23738
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 147
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 401
bin: 7.25e1
variant carriers: 6

African
type: Population
allele count: 8
allele frequency: 1.647446457990115e-3
allele num: 4856
num of homozygotes: 0

South Asian
type: Population
allele count: 431
allele frequency: 3.567880794701987e-2
allele num: 12080
num of homozygotes: 13

Other
type: Population
allele count: 11
allele frequency: 1.713395638629283e-2
allele num: 642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 211
allele frequency: 5.292465134945319e-3
allele num: 39868
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.840245775729647e-4
allele num: 5208
num of homozygotes: 0

Latino
type: Population
allele count: 42
allele frequency: 6.041426927502876e-3
allele num: 6952
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.156e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.43e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

DP
type: SiteQuality
SIO_000300: 1.290288e6

MQ
type: SiteQuality
SIO_000300: 5.082e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

QD
type: SiteQuality
SIO_000300: 1.583e1

GenotypeQuality
all individuals: 4151
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18451
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GenotypeQuality
all individuals: 2623
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variant carriers: 0

GenotypeQuality
all individuals: 2109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.346048316937697e-5
allele num: 29886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3818
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10938
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.218e0

FS
type: SiteQuality
SIO_000300: 5.409e0

QD
type: SiteQuality
SIO_000300: 1.003e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.14e-2

MQ
type: SiteQuality
SIO_000300: 5.176e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

DP
type: SiteQuality
SIO_000300: 1.256136e6

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 243

GenotypeQuality
all individuals: 1064
bin: 4.75e1
variant carriers: 852

GenotypeQuality
all individuals: 566
bin: 9.25e1
variant carriers: 506

GenotypeQuality
all individuals: 151
bin: 7.75e1
variant carriers: 105

GenotypeQuality
all individuals: 3530
bin: 3.75e1
variant carriers: 2959

GenotypeQuality
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bin: 7.25e1
variant carriers: 480

GenotypeQuality
all individuals: 1061
bin: 5.25e1
variant carriers: 999

GenotypeQuality
all individuals: 24133
bin: 9.75e1
variant carriers: 23413

GenotypeQuality
all individuals: 5906
bin: 2.25e1
variant carriers: 3778

GenotypeQuality
all individuals: 2142
bin: 4.25e1
variant carriers: 1976

South Asian
type: Population
allele count: 7023
allele frequency: 5.71533203125e-1
allele num: 12288
num of homozygotes: 1991

European (Finnish)
type: Population
allele count: 2442
allele frequency: 5.616375344986201e-1
allele num: 4348
num of homozygotes: 685

East Asian
type: Population
allele count: 3176
allele frequency: 6.344386735916899e-1
allele num: 5006
num of homozygotes: 993

African
type: Population
allele count: 4141
allele frequency: 7.751778360164733e-1
allele num: 5342
num of homozygotes: 1598

Latino
type: Population
allele count: 3567
allele frequency: 5.578667500781983e-1
allele num: 6394
num of homozygotes: 973

European (Non-Finnish)
type: Population
allele count: 25910
allele frequency: 6.44142800318218e-1
allele num: 40224
num of homozygotes: 8247

Other
type: Population
allele count: 365
allele frequency: 5.925324675324676e-1
allele num: 616
num of homozygotes: 105

FS
type: SiteQuality
SIO_000300: 7.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

DP
type: SiteQuality
SIO_000300: 1.066198e6

MQ
type: SiteQuality
SIO_000300: 5.099e1

QD
type: SiteQuality
SIO_000300: 2.931e1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.599999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 4938
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4290
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6187
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 142
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variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4039
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variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
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variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.653986106516705e-4
allele num: 36276
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.093e1

FS
type: SiteQuality
SIO_000300: 1.445e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.93e-1

DP
type: SiteQuality
SIO_000300: 1.023828e6

QD
type: SiteQuality
SIO_000300: 1.062e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e-1

GenotypeQuality
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4285
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1470
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6206
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variant carriers: 1

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
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variant carriers: 0

GenotypeQuality
all individuals: 756
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3652
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4117
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.130379207498935e-4
allele num: 4694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4232
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

QD
type: SiteQuality
SIO_000300: 1.818e1

DP
type: SiteQuality
SIO_000300: 1.022835e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 4.805e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.77e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: -1.518e0

GenotypeQuality
all individuals: 3825
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 582
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variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
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variant carriers: 0

GenotypeQuality
all individuals: 254
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variant carriers: 0

GenotypeQuality
all individuals: 6856
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variant carriers: 1

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4228
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.802816901408451e-5
allele num: 11360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.483e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

DP
type: SiteQuality
SIO_000300: 1.12813e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.003e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: -1.62e0

MQ
type: SiteQuality
SIO_000300: 5.398e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.003e0

QD
type: SiteQuality
SIO_000300: 2.53e0

GenotypeQuality
all individuals: 7213
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
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variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 16368
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variant carriers: 0

GenotypeQuality
all individuals: 228
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GenotypeQuality
all individuals: 255
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GenotypeQuality
all individuals: 4710
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3420
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variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.552452907243861e-5
allele num: 39178
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.365e1

VQSLOD
type: SiteQuality
SIO_000300: -1.327e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
type: SiteQuality
SIO_000300: 1.129279e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.431e0

QD
type: SiteQuality
SIO_000300: 8.24e0

GenotypeQuality
all individuals: 7135
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5401
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GenotypeQuality
all individuals: 233
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GenotypeQuality
all individuals: 241
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GenotypeQuality
all individuals: 4592
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GenotypeQuality
all individuals: 225
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GenotypeQuality
all individuals: 607
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GenotypeQuality
all individuals: 2490
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variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.553626149131767e-5
allele num: 39160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4664
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

MQ
type: SiteQuality
SIO_000300: 5.567e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.532e0

DP
type: SiteQuality
SIO_000300: 1.137026e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.62e0

MQRankSum
type: SiteQuality
SIO_000300: 7.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.225e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

GenotypeQuality
all individuals: 1438
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6856
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 249
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
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variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 4243
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GenotypeQuality
all individuals: 244
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.07330931966922e-5
allele num: 39422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6644
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 5.37e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.368e0

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.68e-1

MQ
type: SiteQuality
SIO_000300: 5.142e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

DP
type: SiteQuality
SIO_000300: 1.1463e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.85e-1

GenotypeQuality
all individuals: 807
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
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variant carriers: 0

GenotypeQuality
all individuals: 4625
bin: 3.25e1
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GenotypeQuality
all individuals: 697
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variant carriers: 0

GenotypeQuality
all individuals: 447
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GenotypeQuality
all individuals: 708
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GenotypeQuality
all individuals: 548
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GenotypeQuality
all individuals: 1942
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GenotypeQuality
all individuals: 404
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GenotypeQuality
all individuals: 6742
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.287491993778022e-5
allele num: 43716
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.005e0

MQ
type: SiteQuality
SIO_000300: 5.302e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.03e-2

DP
type: SiteQuality
SIO_000300: 1.292411e6

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.496e1

GenotypeQuality
all individuals: 447
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variant carriers: 316

GenotypeQuality
all individuals: 1062
bin: 1.75e1
variant carriers: 149

GenotypeQuality
all individuals: 1673
bin: 2.5e0
variant carriers: 41

GenotypeQuality
all individuals: 3807
bin: 2.75e1
variant carriers: 112

GenotypeQuality
all individuals: 746
bin: 6.75e1
variant carriers: 165

GenotypeQuality
all individuals: 552
bin: 9.25e1
variant carriers: 361

GenotypeQuality
all individuals: 15356
bin: 9.75e1
variant carriers: 9970

GenotypeQuality
all individuals: 6742
bin: 6.25e1
variant carriers: 175

GenotypeQuality
all individuals: 827
bin: 4.25e1
variant carriers: 108

GenotypeQuality
all individuals: 548
bin: 5.75e1
variant carriers: 170

African
type: Population
allele count: 1090
allele frequency: 1.792763157894737e-1
allele num: 6080
num of homozygotes: 71

European (Non-Finnish)
type: Population
allele count: 7598
allele frequency: 1.738036416872541e-1
allele num: 43716
num of homozygotes: 566

East Asian
type: Population
allele count: 635
allele frequency: 1.189584113900337e-1
allele num: 5338
num of homozygotes: 25

European (Finnish)
type: Population
allele count: 600
allele frequency: 1.31694468832309e-1
allele num: 4556
num of homozygotes: 32

Other
type: Population
allele count: 93
allele frequency: 1.448598130841121e-1
allele num: 642
num of homozygotes: 9

South Asian
type: Population
allele count: 978
allele frequency: 8.258740077689579e-2
allele num: 11842
num of homozygotes: 37

Latino
type: Population
allele count: 810
allele frequency: 1.112943116240726e-1
allele num: 7278
num of homozygotes: 30

ClippingRankSum
type: SiteQuality
SIO_000300: -1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

FS
type: SiteQuality
SIO_000300: 3.005e0

DP
type: SiteQuality
SIO_000300: 1.292411e6

QD
type: SiteQuality
SIO_000300: 1.496e1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.03e-2

MQ
type: SiteQuality
SIO_000300: 5.302e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

GenotypeQuality
all individuals: 5951
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4821
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3451
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 6763
bin: 9.75e1
variant carriers: 10

African
type: Population
allele count: 1
allele frequency: 1.645278051990786e-4
allele num: 6078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44048
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.842978252856616e-4
allele num: 5426
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 5.919161170302722e-4
allele num: 11826
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.361285053090117e-4
allele num: 7346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.413e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 5.288e1

VQSLOD
type: SiteQuality
SIO_000300: -1.271e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.22e-1

DP
type: SiteQuality
SIO_000300: 1.201831e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

QD
type: SiteQuality
SIO_000300: 1.292e1

GenotypeQuality
all individuals: 335
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 415
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 779
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4742
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7770
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.741553465691397e-4
allele num: 5742
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45460
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.66e0

QD
type: SiteQuality
SIO_000300: 3.37e0

DP
type: SiteQuality
SIO_000300: 1.254963e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

MQ
type: SiteQuality
SIO_000300: 5.264e1

FS
type: SiteQuality
SIO_000300: 4.943e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.201e0

GenotypeQuality
all individuals: 345
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4497
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.148873990029225e-5
allele num: 46536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

FS
type: SiteQuality
SIO_000300: 3.353e0

DP
type: SiteQuality
SIO_000300: 1.280258e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.441e0

MQ
type: SiteQuality
SIO_000300: 5.361e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

QD
type: SiteQuality
SIO_000300: 5.46e0

GenotypeQuality
all individuals: 280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 14966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 809
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6756
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.627604166666667e-4
allele num: 12288
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6370
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.116e1

FS
type: SiteQuality
SIO_000300: 1.687e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 1.286062e6

MQ
type: SiteQuality
SIO_000300: 5.099e1

VQSLOD
type: SiteQuality
SIO_000300: -1.23e0

GenotypeQuality
all individuals: 910
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 930
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4338
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16038
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6758
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.562011871290222e-4
allele num: 6402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.139220468061438e-5
allele num: 46746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12342
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.28e-1

FS
type: SiteQuality
SIO_000300: 3.005e0

QD
type: SiteQuality
SIO_000300: 1.429e1

MQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.57e0

VQSLOD
type: SiteQuality
SIO_000300: -9.65e-1

MQ
type: SiteQuality
SIO_000300: 5.582e1

DP
type: SiteQuality
SIO_000300: 1.291213e6

GenotypeQuality
all individuals: 1421
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2976
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1054
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17520
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.561524047470331e-4
allele num: 6404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.185e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

DP
type: SiteQuality
SIO_000300: 1.295336e6

QD
type: SiteQuality
SIO_000300: 5.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.847e0

MQ
type: SiteQuality
SIO_000300: 4.682e1

GenotypeQuality
all individuals: 688
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1028
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12688
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5062
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.517450682852807e-4
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 690
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.2961e6

FS
type: SiteQuality
SIO_000300: 1.83e0

MQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

QD
type: SiteQuality
SIO_000300: 5.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.535e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

MQ
type: SiteQuality
SIO_000300: 4.106e1

GenotypeQuality
all individuals: 380
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3443
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5097
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4382
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12252
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5168
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.509661835748792e-4
allele num: 6624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.07090788601723e-5
allele num: 48288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.235e1

QD
type: SiteQuality
SIO_000300: 1.2e1

VQSLOD
type: SiteQuality
SIO_000300: -2.081e0

FS
type: SiteQuality
SIO_000300: 4.45e-1

DP
type: SiteQuality
SIO_000300: 1.294912e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.125e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.24e-1

GenotypeQuality
all individuals: 14510
bin: 9.75e1
variant carriers: 9108

GenotypeQuality
all individuals: 1317
bin: 7.5e0
variant carriers: 35

GenotypeQuality
all individuals: 4237
bin: 3.25e1
variant carriers: 68

GenotypeQuality
all individuals: 395
bin: 7.75e1
variant carriers: 137

GenotypeQuality
all individuals: 453
bin: 1.25e1
variant carriers: 31

GenotypeQuality
all individuals: 2879
bin: 3.75e1
variant carriers: 66

GenotypeQuality
all individuals: 320
bin: 9.25e1
variant carriers: 98

GenotypeQuality
all individuals: 1273
bin: 5.25e1
variant carriers: 83

GenotypeQuality
all individuals: 8651
bin: 6.25e1
variant carriers: 109

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 129

GenotypeQuality
all individuals: 892
bin: 6.75e1
variant carriers: 111

European (Non-Finnish)
type: Population
allele count: 5322
allele frequency: 1.072594622919102e-1
allele num: 49618
num of homozygotes: 213

South Asian
type: Population
allele count: 1400
allele frequency: 1.061088373503108e-1
allele num: 13194
num of homozygotes: 75

East Asian
type: Population
allele count: 373
allele frequency: 5.545643770443057e-2
allele num: 6726
num of homozygotes: 7

Latino
type: Population
allele count: 1735
allele frequency: 1.935951796474001e-1
allele num: 8962
num of homozygotes: 121

African
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allele count: 492
allele frequency: 7.199297629499561e-2
allele num: 6834
num of homozygotes: 13

European (Finnish)
type: Population
allele count: 1078
allele frequency: 1.988196237550719e-1
allele num: 5422
num of homozygotes: 101

Other
type: Population
allele count: 101
allele frequency: 1.422535211267606e-1
allele num: 710
num of homozygotes: 5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.373e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.434662e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.565e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 4.067e1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.860119047619048e-4
allele num: 5376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6746
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13016
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.432664756446991e-3
allele num: 698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48834
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.349e0

FS
type: SiteQuality
SIO_000300: 2.293e0

MQRankSum
type: SiteQuality
SIO_000300: -1.43e-1

DP
type: SiteQuality
SIO_000300: 1.241978e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
type: SiteQuality
SIO_000300: 4.096e1

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4865
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7010
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

QD
type: SiteQuality
SIO_000300: 1.053e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.812e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.270878e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.967e0

MQ
type: SiteQuality
SIO_000300: 3.75e1

GenotypeQuality
all individuals: 18735
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5524
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.380071763731714e-4
allele num: 7246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50492
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.415e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.387e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.589e0

VQSLOD
type: SiteQuality
SIO_000300: -2.652e0

DP
type: SiteQuality
SIO_000300: 1.313556e6

MQRankSum
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 1.623e0

QD
type: SiteQuality
SIO_000300: 1.146e1

GenotypeQuality
all individuals: 170
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15022
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7408
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.365374112506827e-4
allele num: 7324
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e0

VQSLOD
type: SiteQuality
SIO_000300: -1.306e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.122e0

FS
type: SiteQuality
SIO_000300: 1.957e0

QD
type: SiteQuality
SIO_000300: 1.245e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: -1.22e0

MQ
type: SiteQuality
SIO_000300: 4.315e1

DP
type: SiteQuality
SIO_000300: 1.336282e6

GenotypeQuality
all individuals: 1487
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variant carriers: 0

GenotypeQuality
all individuals: 1341
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variant carriers: 0

GenotypeQuality
all individuals: 422
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 830
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 20585
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GenotypeQuality
all individuals: 6658
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variant carriers: 2

GenotypeQuality
all individuals: 269
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.927112786679233e-5
allele num: 50928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.889e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.427e0

MQ
type: SiteQuality
SIO_000300: 4.105e1

FS
type: SiteQuality
SIO_000300: 1.237e0

DP
type: SiteQuality
SIO_000300: 1.339966e6

MQRankSum
type: SiteQuality
SIO_000300: -1.037e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.29e-1

QD
type: SiteQuality
SIO_000300: 7.84e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13558
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
type: Population
allele count: 2
allele frequency: 2.658867322520606e-4
allele num: 7522
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 4.948e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.114e0

MQRankSum
type: SiteQuality
SIO_000300: 4.23e-1

QD
type: SiteQuality
SIO_000300: 1.143e1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

DP
type: SiteQuality
SIO_000300: 1.357397e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.266e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13636
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 7410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.96078431372549e-5
allele num: 51000
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5706
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7604
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
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MQRankSum
type: SiteQuality
SIO_000300: 9.77e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.361605e6

MQ
type: SiteQuality
SIO_000300: 5.098e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 7384
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 3.954444795950648e-5
allele num: 50576
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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Latino
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 3.264417845484222e-4
allele num: 9190
num of homozygotes: 0

African
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 8.789e0

MQ
type: SiteQuality
SIO_000300: 4.9e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

GenotypeQuality
all individuals: 1378
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16187
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6656
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2593
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.987597392272221e-5
allele num: 50312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7360
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.19e-1

QD
type: SiteQuality
SIO_000300: 1.652e1

VQSLOD
type: SiteQuality
SIO_000300: -1.709e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.306e1

DP
type: SiteQuality
SIO_000300: 1.345693e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

GenotypeQuality
all individuals: 14172
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3974
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3968
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.293266205160478e-5
allele num: 47670
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13290
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

MQ
type: SiteQuality
SIO_000300: 5.316e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.402e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

QD
type: SiteQuality
SIO_000300: 1.614e1

FS
type: SiteQuality
SIO_000300: 8.149999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 9.21e-1

DP
type: SiteQuality
SIO_000300: 1.240403e6

VQSLOD
type: SiteQuality
SIO_000300: -2.055e0

GenotypeQuality
all individuals: 742
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6657
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.179123992155154e-5
allele num: 45890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12998
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.421e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.372e0

FS
type: SiteQuality
SIO_000300: 1.819e0

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

DP
type: SiteQuality
SIO_000300: 1.174689e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

QD
type: SiteQuality
SIO_000300: 1.07e1

VQSLOD
type: SiteQuality
SIO_000300: -8.908e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

GenotypeQuality
all individuals: 1118
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12998
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6974
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.246261216350947e-4
allele num: 8024
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6914
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

FS
type: SiteQuality
SIO_000300: 1.819e0

DP
type: SiteQuality
SIO_000300: 1.174689e6

QD
type: SiteQuality
SIO_000300: 1.07e1

VQSLOD
type: SiteQuality
SIO_000300: -8.908e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.372e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

MQ
type: SiteQuality
SIO_000300: 5.421e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.15e-1

GenotypeQuality
all individuals: 835
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6657
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22183
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2477
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13016
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6928
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8044
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.359958144401814e-5
allele num: 45872
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 2.383e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

DP
type: SiteQuality
SIO_000300: 1.173744e6

FS
type: SiteQuality
SIO_000300: 5.293e0

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQ
type: SiteQuality
SIO_000300: 5.297e1

VQSLOD
type: SiteQuality
SIO_000300: -1.34e0

GenotypeQuality
all individuals: 4097
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4163
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1653
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40788
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.347826086956522e-4
allele num: 6900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.121e0

QD
type: SiteQuality
SIO_000300: 4.14e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -1.323e0

MQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

DP
type: SiteQuality
SIO_000300: 1.096626e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.299999999999999e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 5.641e1