8-133771175-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133771175
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133771174
    reference: chr 8
allele count: 4
allele frequency: 3.299350028044475e-5
allele num: 121236
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165071
  ensembl protein: ENSP00000428397
  ensembl transcript: ENST00000519016
  gene symbol: TMEM71
  hgvsc: ENST00000519016.1:c.-266-15delT
  variant of: http://identifiers.org/hgnc/26572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165071
  ensembl protein: ENSP00000430847
  ensembl transcript: ENST00000522334
  gene symbol: TMEM71
  hgvsc: ENST00000522334.1:c.-252+1546delT
  variant of: http://identifiers.org/hgnc/26572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165071
  ensembl protein: ENSP00000430239
  ensembl transcript: ENST00000519304
  gene symbol: TMEM71
  hgvsc: ENST00000519304.1:c.-36-15delT
  variant of: http://identifiers.org/hgnc/26572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165071
  ensembl protein: ENSP00000429873
  ensembl transcript: ENST00000519187
  gene symbol: TMEM71
  hgvsc: ENST00000519187.1:c.-36-15delT
  variant of: http://identifiers.org/hgnc/26572
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000165071
  ensembl protein: ENSP00000349296
  ensembl transcript: ENST00000356838
  gene symbol: TMEM71
  hgvsc: ENST00000356838.3:c.-36-15delT
  variant of: http://identifiers.org/hgnc/26572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165071
  ensembl transcript: ENST00000522594
  gene symbol: TMEM71
  hgvsc: ENST00000522594.1:n.238-15delT
  variant of: http://identifiers.org/hgnc/26572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165071
  ensembl protein: ENSP00000367133
  ensembl transcript: ENST00000377901
  gene symbol: TMEM71
  hgvsc: ENST00000377901.4:c.-36-15delT
  variant of: http://identifiers.org/hgnc/26572
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000165071
  ensembl protein: ENSP00000428228
  ensembl transcript: ENST00000523829
  gene symbol: TMEM71
  hgvsc: ENST00000523829.1:c.-36-15delT
  variant of: http://identifiers.org/hgnc/26572
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000165071
  ensembl transcript: ENST00000517538
  gene symbol: TMEM71
  hgvsc: ENST00000517538.1:n.102-15delT
  variant of: http://identifiers.org/hgnc/26572
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6499
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2984
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7245
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 884
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: TA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

8-133790025-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790025
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790025
    reference: chr 8
allele count: 1
allele frequency: 8.302613662781043e-6
allele num: 120444
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.-37-13T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.272-13T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.-37-13T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1798-13T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.249-17T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.275-17T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.-33-17T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.-37-13T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.247-13T>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11151
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17839
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS

8-133790030-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790030
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790030
    reference: chr 8
allele count: 1
allele frequency: 8.301235223801302e-6
allele num: 120464
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.275-12C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.-37-8C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.-37-8C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1798-8C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.-37-8C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.247-8C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.-33-12C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.249-12C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.272-8C>T
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12613
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3700
  bin: 9.25e1
  variant carriers: 0
hgvs: c.-37-8C>T
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

8-133790043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790043
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790043
    reference: chr 8
allele count: 1
allele frequency: 8.289949265510494e-6
allele num: 120628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.277G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.250G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.-32G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-354G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1793G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.-32G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.276G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.-32G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.252G>A
  variant of: http://identifiers.org/hgnc/24280
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12659
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
hgvs: n.276G>A
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

8-133790049-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790049
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790049
    reference: chr 8
allele count: 1
allele frequency: 8.285416010737898e-6
allele num: 120694
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.-26A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.-26A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.-26A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.-26A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.282A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.258A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.-26A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1787A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.256A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.283A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-348A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12660
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4568
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

8-133790063-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790063
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790063
    reference: chr 8
allele count: 7
allele frequency: 5.792208651904809e-5
allele num: 120852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1773T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.-12T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.272T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.-12T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.-12T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.-12T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.296T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.-12T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-334T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.270T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.297T>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6974
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD

8-133790089-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790089
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790089
    reference: chr 8
allele count: 2
allele frequency: 1.652237129072764e-5
allele num: 121048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.298C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.15C>T
  hgvsp: ENST00000395376.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.15C>T
  hgvsp: ENST00000395386.2:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.15C>T
  hgvsp: ENST00000395390.2:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-308C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.15C>T
  hgvsp: ENST00000337920.4:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.296C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.322C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.15C>T
  hgvsp: ENST00000395379.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.15C>T
  hgvsp: ENST00000486199.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1747C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.323C>T
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro5Pro
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

8-133790093-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790093
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790093
    reference: chr 8
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.19A>G
  hgvsp: ENSP00000378777.1:p.Asn7Asp
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.19A>G
  hgvsp: ENSP00000433125.1:p.Asn7Asp
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.327A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.302A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.19A>G
  hgvsp: ENSP00000378775.1:p.Asn7Asp
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.19A>G
  hgvsp: ENSP00000338269.4:p.Asn7Asp
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.19A>G
  hgvsp: ENSP00000378784.2:p.Asn7Asp
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-304A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.19A>G
  hgvsp: ENSP00000378788.2:p.Asn7Asp
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1743A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.300A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.326A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn7Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

8-133790093-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790093
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790093
    reference: chr 8
allele count: 2
allele frequency: 1.651664051531918e-5
allele num: 121090
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.19A>T
  hgvsp: ENSP00000433125.1:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-304A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.19A>T
  hgvsp: ENSP00000378784.2:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.300A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1743A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.19A>T
  hgvsp: ENSP00000378775.1:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.19A>T
  hgvsp: ENSP00000378788.2:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.19A>T
  hgvsp: ENSP00000338269.4:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.302A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.19A>T
  hgvsp: ENSP00000378777.1:p.Asn7Tyr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.327A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.326A>T
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11930
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn7Tyr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-133790097-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790097
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790097
    reference: chr 8
allele count: 1
allele frequency: 8.256411103221652e-6
allele num: 121118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.23G>A
  hgvsp: ENSP00000378775.1:p.Arg8His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.23G>A
  hgvsp: ENSP00000378788.2:p.Arg8His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.306G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1739G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.23G>A
  hgvsp: ENSP00000378777.1:p.Arg8His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.23G>A
  hgvsp: ENSP00000378784.2:p.Arg8His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-300G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.304G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.23G>A
  hgvsp: ENSP00000433125.1:p.Arg8His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.23G>A
  hgvsp: ENSP00000338269.4:p.Arg8His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.331G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.330G>A
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg8His
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-133790101-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790101
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790101
    reference: chr 8
allele count: 2
allele frequency: 1.650873311982039e-5
allele num: 121148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.27T>C
  hgvsp: ENST00000395379.1:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1735T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-296T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.27T>C
  hgvsp: ENST00000395386.2:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.27T>C
  hgvsp: ENST00000395390.2:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.308T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.27T>C
  hgvsp: ENST00000395376.1:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.27T>C
  hgvsp: ENST00000486199.1:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.335T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.334T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.27T>C
  hgvsp: ENST00000337920.4:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.310T>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro9Pro
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/8-133790108-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790108
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790108
    reference: chr 8
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.34A>C
  hgvsp: ENSP00000433125.1:p.Thr12Pro
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.34A>C
  hgvsp: ENSP00000378777.1:p.Thr12Pro
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.34A>C
  hgvsp: ENSP00000378775.1:p.Thr12Pro
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.341A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.34A>C
  hgvsp: ENSP00000338269.4:p.Thr12Pro
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-289A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.317A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.34A>C
  hgvsp: ENSP00000378788.2:p.Thr12Pro
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.34A>C
  hgvsp: ENSP00000378784.2:p.Thr12Pro
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.342A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1728A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.315A>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr12Pro
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

8-133790119-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790119
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790119
    reference: chr 8
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.326T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.45T>G
  hgvsp: ENSP00000338269.4:p.Ile15Met
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.45T>G
  hgvsp: ENSP00000378788.2:p.Ile15Met
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1717T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-278T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.45T>G
  hgvsp: ENSP00000433125.1:p.Ile15Met
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.45T>G
  hgvsp: ENSP00000378777.1:p.Ile15Met
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.45T>G
  hgvsp: ENSP00000378775.1:p.Ile15Met
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.352T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.45T>G
  hgvsp: ENSP00000378784.2:p.Ile15Met
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.353T>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.328T>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile15Met
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

8-133790135-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790135
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790135
    reference: chr 8
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.369G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.344G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.61G>A
  hgvsp: ENSP00000378775.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.61G>A
  hgvsp: ENSP00000378777.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.61G>A
  hgvsp: ENSP00000378784.2:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.368G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1701G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.61G>A
  hgvsp: ENSP00000338269.4:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.61G>A
  hgvsp: ENSP00000378788.2:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.61G>A
  hgvsp: ENSP00000433125.1:p.Ala21Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.342G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-262G>A
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11967
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala21Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

8-133790138-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790138
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790138
    reference: chr 8
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.64C>T
  hgvsp: ENST00000395376.1:c.64C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.64C>T
  hgvsp: ENST00000337920.4:c.64C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-259C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.64C>T
  hgvsp: ENST00000395386.2:c.64C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.64C>T
  hgvsp: ENST00000486199.1:c.64C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.64C>T
  hgvsp: ENST00000395379.1:c.64C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.64C>T
  hgvsp: ENST00000395390.2:c.64C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.372C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.371C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1698C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.345C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.347C>T
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu22Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

8-133790152-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790152
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790152
    reference: chr 8
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.359A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.78A>G
  hgvsp: ENST00000486199.1:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.78A>G
  hgvsp: ENST00000395379.1:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.385A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.78A>G
  hgvsp: ENST00000395376.1:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-245A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.386A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.361A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.78A>G
  hgvsp: ENST00000337920.4:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.78A>G
  hgvsp: ENST00000395390.2:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1684A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.78A>G
  hgvsp: ENST00000395386.2:c.78A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln26Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

8-133790169-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790169
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790169
    reference: chr 8
allele count: 5
allele frequency: 4.13045633281565e-5
allele num: 121052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.83+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.83+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.391+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.390+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.83+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-240+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.364+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.83+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.83+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.83+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1679+12A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.366+12A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6979
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

8-133790170-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790170
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790170
    reference: chr 8
allele count: 1
allele frequency: 8.261731658955718e-6
allele num: 121040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1679+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.83+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.83+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.83+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.390+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-240+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.391+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.83+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.83+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.83+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.366+13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.364+13T>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

8-133790175-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790175
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790175
    reference: chr 8
allele count: 1
allele frequency: 8.265145879824779e-6
allele num: 120990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.83+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.364+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.83+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.83+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1679+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.391+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.366+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.83+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.83+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.390+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.83+18C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-240+18C>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11820
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12679
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/8-133790180-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790180
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790180
    reference: chr 8
allele count: 2
allele frequency: 1.653767281868095e-5
allele num: 120936
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.83+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.83+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.364+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.366+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.83+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.83+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.83+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.83+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1679+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.391+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.390+23A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-240+23A>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11723
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

8-133790198-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790198
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790198
    reference: chr 8
allele count: 1
allele frequency: 8.287475966319697e-6
allele num: 120664
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.83+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.83+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-240+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.83+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.83+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1679+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.364+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.366+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.83+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.390+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.83+41C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.391+41C>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10102
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

8-133790204-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133790204
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133790204
    reference: chr 8
allele count: 2
allele frequency: 1.6604400166044e-5
allele num: 120450
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1679+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.366+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.83+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.390+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.83+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.83+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.83+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-240+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.364+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.83+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.83+47C>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.391+47C>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10917
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6913
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

8-133806605-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806605
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806605
    reference: chr 8
allele count: 1
allele frequency: 9.30908007670682e-6
allele num: 107422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-43-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.84-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.365-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.392-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.84-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.84-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.367-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.84-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.391-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.84-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.84-51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1678-51A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5969
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11404
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD

8-133806606-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806606
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806604
    reference: chr 8
allele count: 1
allele frequency: 9.304922303898762e-6
allele num: 107470
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.392-48_392-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.84-48_84-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-43-48_-43-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.84-48_84-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.84-48_84-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1678-48_-1678-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.84-48_84-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.391-48_391-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.84-48_84-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.84-48_84-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.365-48_365-47delAA
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.367-48_367-47delAA
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13438
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: TAA
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

8-133806615-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806615
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806615
    reference: chr 8
allele count: 1
allele frequency: 9.242998428690267e-6
allele num: 108190
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.392-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.84-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.367-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-43-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.365-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.84-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.84-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1678-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.84-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.84-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.84-41A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.391-41A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12407
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19496
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

8-133806616-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806616
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806616
    reference: chr 8
allele count: 1
allele frequency: 9.235827622513254e-6
allele num: 108274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.367-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.392-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.84-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.84-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.84-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.84-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.84-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.391-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1678-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-43-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.84-40T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.365-40T>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7014
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12036
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20609
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

8-133806617-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806617
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806617
    reference: chr 8
allele count: 1
allele frequency: 9.231905465288035e-6
allele num: 108320
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1678-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.84-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.84-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.84-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.365-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-43-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.392-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.84-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.84-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.391-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.84-39A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.367-39A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11540
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2969
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7143
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/8-133806626-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806626
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806626
    reference: chr 8
allele count: 1
allele frequency: 9.086613600843237e-6
allele num: 110052
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.84-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.84-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.84-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.391-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.392-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.84-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.84-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1678-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.84-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-43-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.365-30C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.367-30C>A
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

8-133806631-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806631
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806631
    reference: chr 8
allele count: 1
allele frequency: 8.900439681720277e-6
allele num: 112354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.84-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.84-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.84-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.391-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.84-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.367-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1678-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.392-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-43-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.84-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.84-25T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.365-25T>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33406
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

8-133806634-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806634
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806634
    reference: chr 8
allele count: 1
allele frequency: 8.77470078270331e-6
allele num: 113964
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.84-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.367-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.392-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.391-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.84-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.365-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.84-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.84-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.84-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.84-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1678-22A>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-43-22A>T
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1564
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2791
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

8-133806640-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806640
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806640
    reference: chr 8
allele count: 163
allele frequency: 1.398445409152525e-3
allele num: 116558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1678-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.84-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.84-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.392-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.365-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.367-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-43-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.84-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.391-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.84-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.84-16C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.84-16C>T
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3987
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 10046
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 37194
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

8-133806646-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806646
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806646
    reference: chr 8
allele count: 1
allele frequency: 8.45394291897741e-6
allele num: 118288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.84-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-43-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.84-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.392-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.84-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1678-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.367-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.84-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.84-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.365-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.84-10G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.391-10G>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

8-133806662-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806662
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806662
    reference: chr 8
allele count: 1
allele frequency: 8.303854649328218e-6
allele num: 120426
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.373A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.90A>G
  hgvsp: ENST00000395386.2:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.90A>G
  hgvsp: ENST00000486199.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.397A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.90A>G
  hgvsp: ENST00000395379.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.90A>G
  hgvsp: ENST00000337920.4:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.398A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.371A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.90A>G
  hgvsp: ENST00000395376.1:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.90A>G
  hgvsp: ENST00000395390.2:c.90A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1672A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro30Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

8-133806680-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806680
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806680
    reference: chr 8
allele count: 6
allele frequency: 4.95687518588282e-5
allele num: 121044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.415T>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.108T>A
  hgvsp: ENST00000395376.1:c.108T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.108T>A
  hgvsp: ENST00000395386.2:c.108T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.108T>A
  hgvsp: ENST00000337920.4:c.108T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.391T>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.108T>A
  hgvsp: ENST00000395379.1:c.108T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1654T>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.416T>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.108T>A
  hgvsp: ENST00000486199.1:c.108T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-19T>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.108T>A
  hgvsp: ENST00000395390.2:c.108T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.389T>A
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1653
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ile36Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-133806686-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806686
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806686
    reference: chr 8
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.421T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.397T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.422T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1648T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.114T>C
  hgvsp: ENST00000395379.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.114T>C
  hgvsp: ENST00000337920.4:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.114T>C
  hgvsp: ENST00000395390.2:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.114T>C
  hgvsp: ENST00000395376.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.395T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.-13T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.114T>C
  hgvsp: ENST00000395386.2:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.114T>C
  hgvsp: ENST00000486199.1:c.114T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr38Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum

8-133806717-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806717
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806717
    reference: chr 8
allele count: 1
allele frequency: 8.245110649384915e-6
allele num: 121284
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.145C>T
  hgvsp: ENSP00000433125.1:p.Arg49Cys
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.145C>T
  hgvsp: ENSP00000378775.1:p.Arg49Cys
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.145C>T
  hgvsp: ENSP00000378784.2:p.Arg49Cys
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.426C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.145C>T
  hgvsp: ENSP00000378788.2:p.Arg49Cys
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.452C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.145C>T
  hgvsp: ENSP00000338269.4:p.Arg49Cys
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.145C>T
  hgvsp: ENSP00000378777.1:p.Arg49Cys
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1617C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.19C>T
  hgvsp: ENSP00000428091.1:p.Arg7Cys
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.428C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.453C>T
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11784
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg49Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS

8-133806718-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806718
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806718
    reference: chr 8
allele count: 7
allele frequency: 5.77062586559388e-5
allele num: 121304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.146G>A
  hgvsp: ENSP00000338269.4:p.Arg49His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.429G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.146G>A
  hgvsp: ENSP00000378784.2:p.Arg49His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.146G>A
  hgvsp: ENSP00000378788.2:p.Arg49His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.146G>A
  hgvsp: ENSP00000378775.1:p.Arg49His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.454G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1616G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.146G>A
  hgvsp: ENSP00000378777.1:p.Arg49His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.453G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.20G>A
  hgvsp: ENSP00000428091.1:p.Arg7His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.146G>A
  hgvsp: ENSP00000433125.1:p.Arg49His
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.427G>A
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11794
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg49His
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

8-133806734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806734
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806734
    reference: chr 8
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.162T>C
  hgvsp: ENST00000486199.1:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.36T>C
  hgvsp: ENST00000522580.1:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.470T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.469T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.162T>C
  hgvsp: ENST00000395390.2:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1600T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.445T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.162T>C
  hgvsp: ENST00000395376.1:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.162T>C
  hgvsp: ENST00000395386.2:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.162T>C
  hgvsp: ENST00000337920.4:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.443T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.162T>C
  hgvsp: ENST00000395379.1:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr54Tyr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

8-133806749-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806749
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806749
    reference: chr 8
allele count: 3
allele frequency: 2.47239162683369e-5
allele num: 121340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.177C>T
  hgvsp: ENST00000486199.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.458C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.177C>T
  hgvsp: ENST00000395390.2:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.177C>T
  hgvsp: ENST00000337920.4:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.51C>T
  hgvsp: ENST00000522580.1:c.51C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.177C>T
  hgvsp: ENST00000395379.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.484C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.460C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.177C>T
  hgvsp: ENST00000395386.2:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.485C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.177C>T
  hgvsp: ENST00000395376.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1585C>T
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11874
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr59Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

8-133806758-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806758
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806758
    reference: chr 8
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.186C>T
  hgvsp: ENST00000395376.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.469C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.186C>T
  hgvsp: ENST00000486199.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.493C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.186C>T
  hgvsp: ENST00000395386.2:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.186C>T
  hgvsp: ENST00000337920.4:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.494C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.60C>T
  hgvsp: ENST00000522580.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.186C>T
  hgvsp: ENST00000395390.2:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1576C>T
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.186C>T
  hgvsp: ENST00000395379.1:c.186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.467C>T
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser62Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

8-133806761-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806761
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806761
    reference: chr 8
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.496T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.472T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.189T>C
  hgvsp: ENST00000395376.1:c.189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.63T>C
  hgvsp: ENST00000522580.1:c.63T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.189T>C
  hgvsp: ENST00000395379.1:c.189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.189T>C
  hgvsp: ENST00000486199.1:c.189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.189T>C
  hgvsp: ENST00000337920.4:c.189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.470T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.189T>C
  hgvsp: ENST00000395390.2:c.189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.189T>C
  hgvsp: ENST00000395386.2:c.189T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.497T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1573T>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38785
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn63Asn
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

8-133806764-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806764
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806764
    reference: chr 8
allele count: 5
allele frequency: 4.12044896411913e-5
allele num: 121346
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.475A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.66A>G
  hgvsp: ENST00000522580.1:c.66A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.192A>G
  hgvsp: ENST00000395379.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.192A>G
  hgvsp: ENST00000337920.4:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.192A>G
  hgvsp: ENST00000395376.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.473A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.192A>G
  hgvsp: ENST00000395386.2:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.192A>G
  hgvsp: ENST00000486199.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.192A>G
  hgvsp: ENST00000395390.2:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.499A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1570A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.500A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11891
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg64Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

8-133806781-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806781
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806781
    reference: chr 8
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.516G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.83G>C
  hgvsp: ENSP00000428091.1:p.Arg28Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.492G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.209G>C
  hgvsp: ENSP00000378788.2:p.Arg70Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.490G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.209G>C
  hgvsp: ENSP00000378784.2:p.Arg70Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.209G>C
  hgvsp: ENSP00000433125.1:p.Arg70Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.209G>C
  hgvsp: ENSP00000338269.4:p.Arg70Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1553G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.209G>C
  hgvsp: ENSP00000378777.1:p.Arg70Thr
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.517G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.209G>C
  hgvsp: ENSP00000378775.1:p.Arg70Thr
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg70Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/8-133806784-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806784
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806784
    reference: chr 8
allele count: 1
allele frequency: 8.244159013339049e-6
allele num: 121298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.212C>A
  hgvsp: ENSP00000378775.1:p.Pro71Gln
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.493C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.86C>A
  hgvsp: ENSP00000428091.1:p.Pro29Gln
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.212C>A
  hgvsp: ENSP00000378777.1:p.Pro71Gln
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.212C>A
  hgvsp: ENSP00000433125.1:p.Pro71Gln
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.495C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.212C>A
  hgvsp: ENSP00000378788.2:p.Pro71Gln
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1550C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.519C>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.212C>A
  hgvsp: ENSP00000338269.4:p.Pro71Gln
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.212C>A
  hgvsp: ENSP00000378784.2:p.Pro71Gln
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.520C>A
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38709
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro71Gln
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

8-133806791-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806791
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806791
    reference: chr 8
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.527A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.219A>G
  hgvsp: ENST00000337920.4:c.219A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.219A>G
  hgvsp: ENST00000486199.1:c.219A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.219A>G
  hgvsp: ENST00000395386.2:c.219A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.502A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.219A>G
  hgvsp: ENST00000395376.1:c.219A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.500A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.219A>G
  hgvsp: ENST00000395379.1:c.219A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.93A>G
  hgvsp: ENST00000522580.1:c.93A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.219A>G
  hgvsp: ENST00000395390.2:c.219A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.526A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1543A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11922
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu73Leu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

8-133806803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806803
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806803
    reference: chr 8
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.231G>A
  hgvsp: ENST00000395376.1:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.231G>A
  hgvsp: ENST00000395386.2:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.514G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.231G>A
  hgvsp: ENST00000486199.1:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.538G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1531G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.105G>A
  hgvsp: ENST00000522580.1:c.105G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.231G>A
  hgvsp: ENST00000395390.2:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.512G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.539G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.231G>A
  hgvsp: ENST00000337920.4:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.231G>A
  hgvsp: ENST00000395379.1:c.231G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11907
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38536
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly77Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

8-133806810-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806810
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806810
    reference: chr 8
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.238G>A
  hgvsp: ENSP00000338269.4:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.546G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.545G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.238G>A
  hgvsp: ENSP00000378784.2:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.112G>A
  hgvsp: ENSP00000428091.1:p.Asp38Asn
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.238G>A
  hgvsp: ENSP00000378788.2:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.238G>A
  hgvsp: ENSP00000378777.1:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.238G>A
  hgvsp: ENSP00000433125.1:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.238G>A
  hgvsp: ENSP00000378775.1:p.Asp80Asn
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1524G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.519G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.521G>A
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38407
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp80Asn
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

8-133806834-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806834
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806834
    reference: chr 8
allele count: 2
allele frequency: 1.655656550605143e-5
allele num: 120798
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+7A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+7A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4344
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.255+7A>G
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/8-133806838-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806838
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806838
    reference: chr 8
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+11A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+11A>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

8-133806838-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806838
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806838
    reference: chr 8
allele count: 1
allele frequency: 8.285141427364165e-6
allele num: 120698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+11A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+11A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11598
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

8-133806839-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806839
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806839
    reference: chr 8
allele count: 33
allele frequency: 2.735547192333836e-4
allele num: 120634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+12G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+12G>A
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 36392
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1659
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

8-133806848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806848
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806848
    reference: chr 8
allele count: 1
allele frequency: 8.306889734345666e-6
allele num: 120382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+21G>A
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+21G>A
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

8-133806848-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806848
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806848
    reference: chr 8
allele count: 1
allele frequency: 8.306889734345666e-6
allele num: 120382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+21G>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+21G>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11298
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

8-133806864-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806864
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806864
    reference: chr 8
allele count: 1
allele frequency: 8.334027835652971e-6
allele num: 119990
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+37A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+37A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

8-133806876-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806876
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806876
    reference: chr 8
allele count: 5
allele frequency: 4.191255364806867e-5
allele num: 119296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+49A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+49A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11442
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum

8-133806877-CAT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806877
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806875
    reference: chr 8
allele count: 1
allele frequency: 8.387572971884856e-6
allele num: 119224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+53_563+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+53_129+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+53_536+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+53_538+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+53_-1507+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+53_562+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+53_255+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+53_255+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+53_255+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+53_255+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+53_255+54delAT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+53_255+54delAT
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11532
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: CAT
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

8-133806878-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806878
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806878
    reference: chr 8
allele count: 4
allele frequency: 3.352386060778759e-5
allele num: 119318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+51A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+51A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

8-133806878-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806878
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806877
    reference: chr 8
allele count: 1
allele frequency: 8.380965151946898e-6
allele num: 119318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.255+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.255+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.255+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1507+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.563+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.129+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.255+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.255+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.538+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.536+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.255+52delT
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.562+52delT
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5133
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1723
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: AT
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

8-133806929-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806929
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806929
    reference: chr 8
allele count: 4
allele frequency: 3.366379963306458e-5
allele num: 118822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.256-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.539-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.130-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1506-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.256-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.564-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.256-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.256-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.537-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.256-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.256-50A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.563-50A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9048
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6532
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

8-133806943-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806943
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806943
    reference: chr 8
allele count: 1
allele frequency: 8.410146000134562e-6
allele num: 118904
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.256-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.256-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.256-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.256-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1506-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.539-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.256-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.256-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.564-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.563-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.537-36A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.130-36A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

8-133806947-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806947
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806947
    reference: chr 8
allele count: 1
allele frequency: 8.401384548173538e-6
allele num: 119028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.564-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.563-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.539-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.256-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.130-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1506-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.256-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.256-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.256-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.256-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.537-32A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.256-32A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23641
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

http://identifiers.org/exac.variant/8-133806947-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806947
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806947
    reference: chr 8
allele count: 2
allele frequency: 1.680276909634708e-5
allele num: 119028
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.130-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.256-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.564-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.256-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.537-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.563-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.256-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1506-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.256-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.256-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.256-32A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.539-32A>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17377
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1983
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9017
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ

8-133806948-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806948
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806948
    reference: chr 8
allele count: 1
allele frequency: 8.398562166157153e-6
allele num: 119068
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.130-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.256-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.256-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.256-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.256-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.564-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.539-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.256-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.537-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1506-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.563-31T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.256-31T>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9033
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

8-133806960-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806960
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806960
    reference: chr 8
allele count: 1
allele frequency: 8.36372152152822e-6
allele num: 119564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1506-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.256-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.256-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.537-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.539-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.256-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.256-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.563-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.256-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.256-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.130-19T>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.564-19T>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9151
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/8-133806961-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806961
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806961
    reference: chr 8
allele count: 1
allele frequency: 8.35952651641811e-6
allele num: 119624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.564-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.256-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.256-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.256-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.130-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.256-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1506-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.256-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.537-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.563-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.539-18A>C
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.256-18A>C
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

8-133806961-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806961
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806961
    reference: chr 8
allele count: 1
allele frequency: 8.35952651641811e-6
allele num: 119624
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1506-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.537-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.564-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.539-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.256-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.130-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.256-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.563-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.256-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.256-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.256-18A>G
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.256-18A>G
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19239
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

8-133806992-GAGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 133806992
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 133806989
    reference: chr 8
allele count: 1
allele frequency: 8.285827919925758e-6
allele num: 120688
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000395383
  gene symbol: PHF20L1
  hgvsc: ENST00000395383.1:n.582_584delAAG
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378784
  ensembl transcript: ENST00000395386
  gene symbol: PHF20L1
  hgvsc: ENST00000395386.2:c.275_277delAAG
  hgvsp: ENSP00000378784.2:p.Glu92del
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000361997
  gene symbol: PHF20L1
  hgvsc: ENST00000361997.5:n.583_585delAAG
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000220847
  ensembl transcript: ENST00000220847
  gene symbol: PHF20L1
  hgvsc: ENST00000220847.7:c.-1487_-1485delAAG
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000433125
  ensembl transcript: ENST00000486199
  gene symbol: PHF20L1
  hgvsc: ENST00000486199.1:c.275_277delAAG
  hgvsp: ENSP00000433125.1:p.Glu92del
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000428091
  ensembl transcript: ENST00000522580
  gene symbol: PHF20L1
  hgvsc: ENST00000522580.1:c.149_151delAAG
  hgvsp: ENSP00000428091.1:p.Glu50del
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378775
  ensembl transcript: ENST00000395376
  gene symbol: PHF20L1
  hgvsc: ENST00000395376.1:c.275_277delAAG
  hgvsp: ENSP00000378775.1:p.Glu92del
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000338269
  ensembl transcript: ENST00000337920
  gene symbol: PHF20L1
  hgvsc: ENST00000337920.4:c.275_277delAAG
  hgvsp: ENSP00000338269.4:p.Glu92del
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000315808
  gene symbol: PHF20L1
  hgvsc: ENST00000315808.10:n.558_560delAAG
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378777
  ensembl transcript: ENST00000395379
  gene symbol: PHF20L1
  hgvsc: ENST00000395379.1:c.275_277delAAG
  hgvsp: ENSP00000378777.1:p.Glu92del
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000129292
  ensembl transcript: ENST00000485595
  gene symbol: PHF20L1
  hgvsc: ENST00000485595.1:n.556_558delAAG
  variant of: http://identifiers.org/hgnc/24280
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000129292
  ensembl protein: ENSP00000378788
  ensembl transcript: ENST00000395390
  gene symbol: PHF20L1
  hgvsc: ENST00000395390.2:c.275_277delAAG
  hgvsp: ENSP00000378788.2:p.Glu92del
  variant of: http://identifiers.org/hgnc/24280
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9253
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu92del
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
reference allele: GAGA

GenotypeQuality
all individuals: 141
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1168
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 199
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51511
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.001680470531749e-5
allele num: 66648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 3.796087e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.16e-1

QD
type: SiteQuality
SIO_000300: 7.58e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.24e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.42e-1

GenotypeQuality
all individuals: 473
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4603
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3074
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13192
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.178967224711153e-4
allele num: 8482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10250
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 2.117e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

VQSLOD
type: SiteQuality
SIO_000300: -1.28e0

DP
type: SiteQuality
SIO_000300: 2.348534e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14261
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5124
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17824
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66298
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.091617933723197e-5
allele num: 16416
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.702e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.61e-1

DP
type: SiteQuality
SIO_000300: 2.352903e6

VQSLOD
type: SiteQuality
SIO_000300: 1.92e-1

QD
type: SiteQuality
SIO_000300: 8.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

GenotypeQuality
all individuals: 3063
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7184
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3694
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17822
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16448
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.962e1

QD
type: SiteQuality
SIO_000300: 1.258e1

VQSLOD
type: SiteQuality
SIO_000300: 9.15e-1

DP
type: SiteQuality
SIO_000300: 2.362679e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.035e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

FS
type: SiteQuality
SIO_000300: 8.852e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15754
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7194
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17821
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3062
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5135
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505933377507379e-5
allele num: 66404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.54e-2

QD
type: SiteQuality
SIO_000300: 1.941e1

FS
type: SiteQuality
SIO_000300: 6.933e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.95e-1

DP
type: SiteQuality
SIO_000300: 2.365281e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: -1.815e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16240
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7212
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5129
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4567
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17821
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3073
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.052916578923618e-4
allele num: 66482
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.369839e6

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

MQ
type: SiteQuality
SIO_000300: 5.985e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-2

FS
type: SiteQuality
SIO_000300: 1.395e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-1

QD
type: SiteQuality
SIO_000300: 1.39e1

GenotypeDepth
all individuals: 6976
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 607
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1002
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4570
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17816
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16456
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003995313767311e-5
allele num: 66578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.51e0

DP
type: SiteQuality
SIO_000300: 2.37331e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.994e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.8e-2

GenotypeDepth
all individuals: 9521
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 769
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4392
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17815
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

FS
type: SiteQuality
SIO_000300: 3.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

DP
type: SiteQuality
SIO_000300: 2.373981e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

GenotypeDepth
all individuals: 477
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6975
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3695
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5140
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17815
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7252
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.932367149758454e-4
allele num: 10350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e-1

FS
type: SiteQuality
SIO_000300: 3.71e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

DP
type: SiteQuality
SIO_000300: 2.373981e6

QD
type: SiteQuality
SIO_000300: 1.281e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

GenotypeDepth
all individuals: 607
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12705
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2636
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17813
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5138
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3087
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16529
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3693
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501231009427731e-5
allele num: 66612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.374142e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.103e0

QD
type: SiteQuality
SIO_000300: 1.503e1

MQRankSum
type: SiteQuality
SIO_000300: -2.205e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.867e1

VQSLOD
type: SiteQuality
SIO_000300: -2.145e0

FS
type: SiteQuality
SIO_000300: 4.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

GenotypeDepth
all individuals: 1576
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6975
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12708
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16555
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4569
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5139
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17813
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3693
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0016509079994e-5
allele num: 66630
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.98e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.863e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.374535e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeDepth
all individuals: 6975
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12708
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3693
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17811
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5138
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4569
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3088
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.32e0

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.374976e6

FS
type: SiteQuality
SIO_000300: 2.612e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

GenotypeDepth
all individuals: 4392
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 412
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 12708
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3693
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16594
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17811
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5140
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.389e1

FS
type: SiteQuality
SIO_000300: 2.019e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.699e0

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

DP
type: SiteQuality
SIO_000300: 2.375207e6

GenotypeDepth
all individuals: 1282
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1002
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 339
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7264
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17811
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3693
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.923e0

QD
type: SiteQuality
SIO_000300: 1.384e1

DP
type: SiteQuality
SIO_000300: 2.374959e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.57e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

GenotypeDepth
all individuals: 769
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11967
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 9520
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5137
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3693
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17810
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3085
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.176e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.987e1

FS
type: SiteQuality
SIO_000300: 3.357e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

DP
type: SiteQuality
SIO_000300: 2.374888e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.216e1

GenotypeDepth
all individuals: 412
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 606
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3694
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5138
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16469
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17809
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.661008141347653e-5
allele num: 11546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.14e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.364e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

DP
type: SiteQuality
SIO_000300: 2.373833e6

VQSLOD
type: SiteQuality
SIO_000300: 5.92e-1

QD
type: SiteQuality
SIO_000300: 1.625e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 478
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3694
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7215
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 16110
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5128
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17809
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3067
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.838397522740468e-4
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 8.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.08e0

MQ
type: SiteQuality
SIO_000300: 5.983e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.63e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.74e-1

QD
type: SiteQuality
SIO_000300: 1.612e1

DP
type: SiteQuality
SIO_000300: 2.370215e6

GenotypeDepth
all individuals: 1281
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16059
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3063
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2308
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4566
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3694
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17807
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.0e-3

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.41e0

QD
type: SiteQuality
SIO_000300: 1.207e1

MQRankSum
type: SiteQuality
SIO_000300: -1.869e0

DP
type: SiteQuality
SIO_000300: 2.369574e6

FS
type: SiteQuality
SIO_000300: 1.081e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.16e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeDepth
all individuals: 6983
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7179
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5126
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3056
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15753
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17807
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3692
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4565
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.073120369245719e-5
allele num: 16466
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.366579e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.449e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.224e0

MQRankSum
type: SiteQuality
SIO_000300: -1.6e0

QD
type: SiteQuality
SIO_000300: 1.188e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-1

GenotypeDepth
all individuals: 1576
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3687
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4556
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7145
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15348
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3033
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17804
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5106
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.329373398555789e-4
allele num: 8586
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.05e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e-1

DP
type: SiteQuality
SIO_000300: 2.362264e6

QD
type: SiteQuality
SIO_000300: 8.529999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.19e-1

GenotypeDepth
all individuals: 4382
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 973
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11838
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2297
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5010
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2912
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6462
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17776
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 176
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3677
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4512
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505978735580254e-5
allele num: 66402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.572e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.451e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.322824e6

MQRankSum
type: SiteQuality
SIO_000300: -4.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.334e0

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

GenotypeDepth
all individuals: 769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2836
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 279
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4940
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17767
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 917
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1958
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1327
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4501
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9323
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5976
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3664
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.220256253813301e-4
allele num: 16390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.567e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.071e0

DP
type: SiteQuality
SIO_000300: 2.303859e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.96e-1

QD
type: SiteQuality
SIO_000300: 1.001e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 252
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2579
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5736
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3390
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1413
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4460
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6023
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4479
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 758
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6482
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5703
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1897
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6135
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.453786523553965e-5
allele num: 13416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59262
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10824
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6336
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.659e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 1.250177e6

QD
type: SiteQuality
SIO_000300: 9.58e0

GenotypeDepth
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4775
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1892
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 628
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7013
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6484
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2947
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3387
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3534
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5426
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6008
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1253
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.223390518354546e-5
allele num: 10842
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.841e0

FS
type: SiteQuality
SIO_000300: 3.632e0

QD
type: SiteQuality
SIO_000300: 1.395e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

MQ
type: SiteQuality
SIO_000300: 5.848e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 1.252306e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.67e-1

GenotypeDepth
all individuals: 364
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5439
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2012
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18320
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5596
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6236
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2808
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2602
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4491
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.359434795407713e-5
allele num: 13588
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.309007e6

QD
type: SiteQuality
SIO_000300: 1.483e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.2e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

GenotypeDepth
all individuals: 907
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2178
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5460
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1552
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4492
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6261
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 790
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19441
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4309
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9220
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.358351729212656e-5
allele num: 13590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.94e-1

DP
type: SiteQuality
SIO_000300: 1.318102e6

QD
type: SiteQuality
SIO_000300: 1.535e1

GenotypeDepth
all individuals: 328
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4722
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20716
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2721
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 791
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6297
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5268
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4493
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.34322220590395e-5
allele num: 13618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6360
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.809e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.43e0

DP
type: SiteQuality
SIO_000300: 1.328737e6

VQSLOD
type: SiteQuality
SIO_000300: -9.174e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.31e-1

GenotypeDepth
all individuals: 201
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3209
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1763
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 228
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 707
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2286
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1943
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 832
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4513
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28463
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5739
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.275835672365399e-4
allele num: 7838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60666
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.616e0

MQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

DP
type: SiteQuality
SIO_000300: 1.415116e6

FS
type: SiteQuality
SIO_000300: 1.2085e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.491e0

QD
type: SiteQuality
SIO_000300: 8.59e0

GenotypeDepth
all individuals: 1552
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4532
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4670
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1824
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 870
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1893
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.973438621679828e-5
allele num: 11144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61954
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.679e0

MQRankSum
type: SiteQuality
SIO_000300: -3.11e-1

QD
type: SiteQuality
SIO_000300: 2.042e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.25e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 1.467994e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

GenotypeDepth
all individuals: 3681
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2463
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35321
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4536
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 702
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1924
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1218
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5668
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14632
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8220
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024590163934426e-4
allele num: 9760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62802
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.497102e6

QD
type: SiteQuality
SIO_000300: 1.5e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 4.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeDepth
all individuals: 84
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4701
bin: 9.75e1
variant carriers: 160

GenotypeQuality
all individuals: 29
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1994
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 901
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 37590
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2465
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 3
allele frequency: 3.401360544217687e-3
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 94
allele frequency: 1.464265686335597e-3
allele num: 64196
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.316135825217162e-4
allele num: 15196
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 1.422475106685633e-3
allele num: 8436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 52
allele frequency: 7.987711213517665e-3
allele num: 6510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.27e-1

DP
type: SiteQuality
SIO_000300: 1.541658e6

FS
type: SiteQuality
SIO_000300: 2.026e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.81e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

QD
type: SiteQuality
SIO_000300: 1.173e1

VQSLOD
type: SiteQuality
SIO_000300: 3.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

GenotypeDepth
all individuals: 10499
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2597
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6095
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 925
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4604
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 39084
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65094
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.83671060397403e-5
allele num: 10166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.741e0

MQRankSum
type: SiteQuality
SIO_000300: 2.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.563987e6

QD
type: SiteQuality
SIO_000300: 1.123e1

MQ
type: SiteQuality
SIO_000300: 5.712e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: -1.181e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeDepth
all individuals: 657
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 366
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11249
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4614
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2111
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 482
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40633
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6369
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510391493475109e-5
allele num: 66208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

QD
type: SiteQuality
SIO_000300: 1.318e1

FS
type: SiteQuality
SIO_000300: 9.782999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.752e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.569e-1

DP
type: SiteQuality
SIO_000300: 1.591537e6

GenotypeDepth
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 255
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4618
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1770
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6455
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.021742399182028e-5
allele num: 66506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.34e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.364e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.85e-1

DP
type: SiteQuality
SIO_000300: 1.600197e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.11e-1

GenotypeDepth
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2663
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41075
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4614
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1761
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6476
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.661e-1

FS
type: SiteQuality
SIO_000300: 4.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.118e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.17e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.601174e6

QD
type: SiteQuality
SIO_000300: 1.405e1

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

GenotypeDepth
all individuals: 366
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4414
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4616
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41159
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6482
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

DP
type: SiteQuality
SIO_000300: 1.603789e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e-1

FS
type: SiteQuality
SIO_000300: 6.04e0

GenotypeDepth
all individuals: 150
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 945
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41182
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4622
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06134076857801e-5
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.461405330564209e-4
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.796e0

QD
type: SiteQuality
SIO_000300: 1.386e1

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.47e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

DP
type: SiteQuality
SIO_000300: 1.604198e6

GenotypeDepth
all individuals: 38814
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6490
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41214
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49934029027228e-5
allele num: 66696
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.604535e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

QD
type: SiteQuality
SIO_000300: 1.488e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

GenotypeDepth
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 113
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2665
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41223
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4620
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 41
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6490
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497616263380409e-5
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

DP
type: SiteQuality
SIO_000300: 1.60497e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.039e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.81e-1

FS
type: SiteQuality
SIO_000300: 1.003e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

QD
type: SiteQuality
SIO_000300: 1.348e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeDepth
all individuals: 946
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 209
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 439
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41232
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 939
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 748
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6493
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.361e0

VQSLOD
type: SiteQuality
SIO_000300: 3.86e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.337e1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

DP
type: SiteQuality
SIO_000300: 1.605014e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.086e0

GenotypeDepth
all individuals: 338
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 366
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41239
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 748
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6496
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

FS
type: SiteQuality
SIO_000300: 6.947e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.81e-1

DP
type: SiteQuality
SIO_000300: 1.605042e6

QD
type: SiteQuality
SIO_000300: 1.164e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e0

GenotypeDepth
all individuals: 439
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 367
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 126
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41230
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4622
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.106194690265487e-3
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817961459217065e-4
allele num: 16502
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.605276e6

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.138e1

GenotypeDepth
all individuals: 366
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 338
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41210
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6503
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2669
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2139
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66678
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.062075654704171e-5
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.091e0

FS
type: SiteQuality
SIO_000300: 3.983e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.13e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

MQRankSum
type: SiteQuality
SIO_000300: -4.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

DP
type: SiteQuality
SIO_000300: 1.604911e6

GenotypeDepth
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6499
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 938
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41196
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2668
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.155e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.64e-1

QD
type: SiteQuality
SIO_000300: 9.970000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -7.76e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.604745e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 38662
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 256
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 947
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6500
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2664
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4619
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41148
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.47e0

FS
type: SiteQuality
SIO_000300: 9.273999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: -1.478e0

MQ
type: SiteQuality
SIO_000300: 5.936e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 1.604346e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeDepth
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1668
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 200
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2132
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6474
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40997
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4620
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2659
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50154659299078e-5
allele num: 66598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.185e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.453e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e-1

FS
type: SiteQuality
SIO_000300: 1.083e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

DP
type: SiteQuality
SIO_000300: 1.602965e6

GenotypeDepth
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 663
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40817
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4620
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6452
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.639e1

MQ
type: SiteQuality
SIO_000300: 5.881e1

DP
type: SiteQuality
SIO_000300: 1.601387e6

FS
type: SiteQuality
SIO_000300: 4.054e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.771e0

VQSLOD
type: SiteQuality
SIO_000300: -1.553e0

MQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.21e-1

GenotypeDepth
all individuals: 953
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 367
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 150
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39368
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4620
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.01050666827227e-5
allele num: 66434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.44e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: 4.65e-1

DP
type: SiteQuality
SIO_000300: 1.587965e6

FS
type: SiteQuality
SIO_000300: 2.904e0

QD
type: SiteQuality
SIO_000300: 1.682e1

GenotypeDepth
all individuals: 439
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38921
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4621
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6352
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505978735580254e-5
allele num: 66402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.584103e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

FS
type: SiteQuality
SIO_000300: 8.718e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

QD
type: SiteQuality
SIO_000300: 7.25e0

GenotypeDepth
all individuals: 366
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4621
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 503
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38921
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6352
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.643201542912247e-5
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

DP
type: SiteQuality
SIO_000300: 1.584103e6

FS
type: SiteQuality
SIO_000300: 8.718e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeDepth
all individuals: 370
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 283
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4647
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 337
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 33
allele frequency: 3.184098803550753e-3
allele num: 10364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66356
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.236e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.19e0

DP
type: SiteQuality
SIO_000300: 1.581865e6

GenotypeDepth
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4626
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.328e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.255e1

DP
type: SiteQuality
SIO_000300: 1.570022e6

VQSLOD
type: SiteQuality
SIO_000300: 2.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

MQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.119e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 747
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4626
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 285
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 936
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2626
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509798592867711e-5
allele num: 66234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.570022e6

FS
type: SiteQuality
SIO_000300: 2.328e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.119e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

QD
type: SiteQuality
SIO_000300: 1.255e1

GenotypeDepth
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2093
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1734
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 940
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32595
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4631
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6072
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51437138443832e-5
allele num: 66034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.54875e6

VQSLOD
type: SiteQuality
SIO_000300: 3.45e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

GenotypeDepth
all individuals: 256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2666
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4635
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 321
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2729
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 946
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1801
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2068
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.117595710188303e-4
allele num: 16038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e-1

FS
type: SiteQuality
SIO_000300: 7.134e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.368e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.19e-1

DP
type: SiteQuality
SIO_000300: 1.547314e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e-1

GenotypeDepth
all individuals: 112
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2285
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26675
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4633
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1529
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2047
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2733
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 951
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5915
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522533495736906e-5
allele num: 65680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10272
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

MQ
type: SiteQuality
SIO_000300: 6.057e1

FS
type: SiteQuality
SIO_000300: 9.249000000000001e0

QD
type: SiteQuality
SIO_000300: 1.453e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.98e-1

DP
type: SiteQuality
SIO_000300: 1.548844e6

GenotypeDepth
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4644
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 25694
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6013
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.089392278650591e-5
allele num: 65688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.551448e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

FS
type: SiteQuality
SIO_000300: 9.56e-1

QD
type: SiteQuality
SIO_000300: 1.48e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.38e-1

GenotypeDepth
all individuals: 126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2163
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2272
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6013
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4644
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25694
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1355
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2837
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.718395815170009e-5
allele num: 11470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65688
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 9.56e-1

QD
type: SiteQuality
SIO_000300: 1.48e1

MQRankSum
type: SiteQuality
SIO_000300: -7.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

DP
type: SiteQuality
SIO_000300: 1.551448e6

GenotypeDepth
all individuals: 62
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31182
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1273
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1783
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 928
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7481
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2736
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2558
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16342
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.12126220426652e-5
allele num: 65346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.77e0

FS
type: SiteQuality
SIO_000300: 7.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

MQRankSum
type: SiteQuality
SIO_000300: 3.95e-1

DP
type: SiteQuality
SIO_000300: 1.599313e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2545
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7299
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1631
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 713
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529660109523664e-5
allele num: 65374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16368
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.15e0

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
SIO_000300: 3.734e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.639e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.39e-1

DP
type: SiteQuality
SIO_000300: 1.618271e6

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527650473571647e-5
allele num: 65460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 1.631351e6

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 788
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39064
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 9.75e1
variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.055300947143294e-5
allele num: 65460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9868
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

QD
type: SiteQuality
SIO_000300: 1.427e1

DP
type: SiteQuality
SIO_000300: 1.631351e6

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 49
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7331
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1134
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1616
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2545
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 435
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 874
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39652
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189060642092747e-4
allele num: 8410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.84e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-1

FS
type: SiteQuality
SIO_000300: 1.643e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

QD
type: SiteQuality
SIO_000300: 1.239e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.866e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 5.928e1

DP
type: SiteQuality
SIO_000300: 1.634082e6

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42430
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1584
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7379
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1556
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1021
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2540
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 579
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51952590791673e-5
allele num: 65810
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.14e-1

QD
type: SiteQuality
SIO_000300: 1.607e1

DP
type: SiteQuality
SIO_000300: 1.659592e6

FS
type: SiteQuality
SIO_000300: 3.921e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.89e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -2.787e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.88e0

GenotypeDepth
all individuals: 76
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65836
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.171508903467666e-4
allele num: 8536
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

DP
type: SiteQuality
SIO_000300: 1.661523e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.271e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1580
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 866
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2538
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 190
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7375
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.09979260705136e-5
allele num: 16394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.661523e6

VQSLOD
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: 2.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.271e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

GenotypeDepth
all individuals: 335
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 110
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1575
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1560
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2537
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 348
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45098
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0