5-179146777-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146777
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146777
    reference: chr 5
allele count: 1
allele frequency: 1.094307412838415e-5
allele num: 91382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1020G>A
  hgvsp: ENST00000504734.1:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.696G>A
  hgvsp: ENST00000512607.2:c.696G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.828G>A
  hgvsp: ENST00000502673.1:c.828G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*670G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1020G>A
  hgvsp: ENST00000247461.4:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1020G>A
  hgvsp: ENST00000452673.2:c.1020G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1125G>A
  hgvsp: ENST00000415618.2:c.1125G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12283
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2286
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2536
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29029
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu340Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

5-179146783-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146783
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146783
    reference: chr 5
allele count: 1
allele frequency: 1.136699479391638e-5
allele num: 87974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+1G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+1G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+1G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+1G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+1G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+1G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+1G>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2625
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1025+1G>A
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

5-179146787-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146787
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146787
    reference: chr 5
allele count: 1
allele frequency: 1.184188712313194e-5
allele num: 84446
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+5G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+5G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+5G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+5G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+5G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+5G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+5G>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14755
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23050
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6323
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1821
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4020
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2478
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1025+5G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

5-179146793-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146793
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146793
    reference: chr 5
allele count: 1
allele frequency: 1.278249309745373e-5
allele num: 78232
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+11C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+11C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+11C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+11C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+11C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+11C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+11C>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23038
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15715
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1601
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2696
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6521
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum

5-179146814-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146814
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146814
    reference: chr 5
allele count: 107
allele frequency: 2.122763163115502e-3
allele num: 50406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+32C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+32C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+32C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+32C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+32C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+32C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+32C>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20316
  bin: 7.5e0
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13464
  bin: 1.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 1.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12856
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4136
  bin: 6.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20476
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2068
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

5-179146816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146816
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146816
    reference: chr 5
allele count: 2
allele frequency: 4.230655328510386e-5
allele num: 47274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+34G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+34G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+34G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+34G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+34G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+34G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+34G>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12237
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2091
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16697
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21545
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

5-179146817-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146817
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146818
    reference: chr 5
allele count: 2
allele frequency: 4.630058338735068e-5
allele num: 43196
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+42dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+42dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+42dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+42dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+42dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+42dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+42dupT
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 13550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21963
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10789
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

5-179146817-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146817
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146817
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 43196
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+35G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+35G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+35G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+35G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+35G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+35G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+35G>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 1968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21963
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2629
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP

5-179146821-TTTTG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146821
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146817
    reference: chr 5
allele count: 8
allele frequency: 2.216312056737589e-4
allele num: 36096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+47_*675+50delGTTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+47_1025+50delGTTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+47_1025+50delGTTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+47_701+50delGTTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+47_1025+50delGTTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+47_833+50delGTTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+47_1130+50delGTTT
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23752
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 8129
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6251
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 23198
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4268
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 9412
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: TTTTG
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

5-179146825-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146825
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146826
    reference: chr 5
allele count: 8
allele frequency: 2.399520095980804e-4
allele num: 33340
alternate allele: GT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+46dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+46dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+46dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+46dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+46dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+46dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+46dupT
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23790
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13972
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 22315
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3316
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5974
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5869
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 2.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

5-179146825-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146825
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146825
    reference: chr 5
allele count: 45
allele frequency: 1.349730053989202e-3
allele num: 33340
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+43G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+43G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+43G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+43G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+43G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+43G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+43G>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23790
  bin: 7.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13972
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1325
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5869
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5974
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 8.75e1
  variant carriers: 3
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD

5-179146828-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146828
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146827
    reference: chr 5
allele count: 2
allele frequency: 6.529972574115189e-5
allele num: 30628
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+47delG
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+47delG
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+47delG
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+47delG
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+47delG
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+47delG
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+47delG
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14423
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23927
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7043
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 951
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5981
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4756
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7019
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: TG
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-179146829-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146829
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146830
    reference: chr 5
allele count: 2402
allele frequency: 1.455934052612438e-1
allele num: 16498
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+58dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+58dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+58dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+58dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+58dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+58dupT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+58dupT
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.75e1
  variant carriers: 393
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.75e1
  variant carriers: 727
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.25e1
  variant carriers: 707
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 1.25e1
  variant carriers: 339
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.5e0
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 24544
  bin: 7.5e0
  variant carriers: 388
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 159
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.25e1
  variant carriers: 209
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 6.25e1
  variant carriers: 188
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 1.75e1
  variant carriers: 165
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.25e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 14195
  bin: 7.5e0
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.75e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 216
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 154
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 3.75e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 25542
  bin: 2.5e0
  variant carriers: 60
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

5-179146829-G-GTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146829
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146831
    reference: chr 5
allele count: 20
allele frequency: 1.212268153715602e-3
allele num: 16498
alternate allele: GTT
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+57_*675+58dupTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+57_1025+58dupTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+57_701+58dupTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+57_833+58dupTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+57_1130+58dupTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+57_1025+58dupTT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+57_1025+58dupTT
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24544
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 3
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

5-179146829-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146829
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146829
    reference: chr 5
allele count: 138
allele frequency: 8.364650260637653e-3
allele num: 16498
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24544
  bin: 7.5e0
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 1.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 14195
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 25542
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 5.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 9.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 115
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.75e1
  variant carriers: 6
num of homozygotes: 2
population: African
  type: Population
  allele count: 128
  allele frequency: 6.25e-2
  allele num: 2048
  num of homozygotes: 2
population: European (Non-Finnish)
  type: Population
  allele count: 5
  allele frequency: 6.451612903225806e-4
  allele num: 7750
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 846
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4300
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

5-179146829-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146829
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146828
    reference: chr 5
allele count: 996
allele frequency: 6.037095405503697e-2
allele num: 16498
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+58delT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+58delT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+58delT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+58delT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+58delT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+58delT
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+58delT
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 4.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 6709
  bin: 1.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.75e1
  variant carriers: 115
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 2.25e1
  variant carriers: 214
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 1.75e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 24544
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 14384
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 4.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 3.75e1
  variant carriers: 65
genotype quality: GenotypeQuality
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 474
genotype quality: GenotypeQuality
  all individuals: 14195
  bin: 7.5e0
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 5.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 835
  bin: 2.75e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 1.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 25542
  bin: 2.5e0
  variant carriers: 44
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 6.75e1
  variant carriers: 28
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GT
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

5-179146830-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146830
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146830
    reference: chr 5
allele count: 5
allele frequency: 5.285412262156448e-4
allele num: 9460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+48T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+48T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+48T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+48T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+48T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+48T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+48T>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24128
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 14721
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14245
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2869
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

5-179146833-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146833
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146833
    reference: chr 5
allele count: 2
allele frequency: 6.68985817500669e-5
allele num: 29896
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+51T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+51T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+51T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+51T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+51T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+51T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+51T>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5649
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8556
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7765
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1044
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4379
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5779
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

5-179146834-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179146834
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179146834
    reference: chr 5
allele count: 1
allele frequency: 3.403444285617044e-5
allele num: 29382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*675+52T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.833+52T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.701+52T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1025+52T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1025+52T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1130+52T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1025+52T>C
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1914
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4748
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1033
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1509
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQ

5-179147354-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147354
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147354
    reference: chr 5
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-51T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-51T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-51T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-51T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-51T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-51T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-51T>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5138
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8478
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3920
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

5-179147360-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147360
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147360
    reference: chr 5
allele count: 8
allele frequency: 6.618243187345919e-5
allele num: 120878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-45T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-45T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-45T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-45T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-45T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-45T>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-45T>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5141
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9662
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6524
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8558
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7279
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30626
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3948
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2287
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-179147363-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147363
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147363
    reference: chr 5
allele count: 1
allele frequency: 8.270614506657845e-6
allele num: 120910
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-42A>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6948
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4001
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 30690
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

5-179147367-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147367
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147367
    reference: chr 5
allele count: 1
allele frequency: 8.270751315049459e-6
allele num: 120908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-38C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-38C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-38C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-38C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-38C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-38C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-38C>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9979
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7299
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3735
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP

5-179147368-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147368
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147368
    reference: chr 5
allele count: 2
allele frequency: 1.65338447802652e-5
allele num: 120964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-37A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-37A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-37A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-37A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-37A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-37A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-37A>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9306
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2246
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9986
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3771
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ

http://identifiers.org/exac.variant/5-179147372-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147372
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147372
    reference: chr 5
allele count: 1
allele frequency: 8.265555775970376e-6
allele num: 120984
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-33C>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-33C>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-33C>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-33C>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-33C>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-33C>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-33C>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8037
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4045
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2500
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

5-179147372-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147372
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147372
    reference: chr 5
allele count: 7
allele frequency: 5.785889043179263e-5
allele num: 120984
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-33C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-33C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-33C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-33C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-33C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-33C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-33C>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2247
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 942
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8037
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3786
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2349
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4045
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3800
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

5-179147379-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147379
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147379
    reference: chr 5
allele count: 13
allele frequency: 1.073244831913348e-4
allele num: 121128
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-26A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-26A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-26A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-26A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-26A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-26A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-26A>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3818
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30769
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

5-179147386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147386
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147386
    reference: chr 5
allele count: 5
allele frequency: 4.124936063491016e-5
allele num: 121214
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-19G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-19G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-19G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-19G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-19G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-19G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-19G>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10194
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4083
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

5-179147389-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147389
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147389
    reference: chr 5
allele count: 95
allele frequency: 7.834405409863104e-4
allele num: 121260
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-16G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-16G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-16G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-16G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-16G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-16G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-16G>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8171
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9355
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5172
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 9248
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10192
  bin: 3.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 4079
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8848
  bin: 6.25e1
  variant carriers: 2
num of homozygotes: 2
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

5-179147400-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147400
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147400
    reference: chr 5
allele count: 2
allele frequency: 1.648098094798602e-5
allele num: 121352
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-5C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-5C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-5C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-5C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-5C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-5C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-5C>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9357
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1026-5C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

5-179147401-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147401
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147401
    reference: chr 5
allele count: 5
allele frequency: 4.119973632168754e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1131-4G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.834-4G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1026-4G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*676-4G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1026-4G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.702-4G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1026-4G>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10209
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8174
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4092
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30812
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: c.1026-4G>A
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-179147413-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147413
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147413
    reference: chr 5
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1034A>C
  hgvsp: ENSP00000247461.4:p.Asp345Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1034A>C
  hgvsp: ENSP00000424063.1:p.Asp345Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1139A>C
  hgvsp: ENSP00000394817.2:p.Asp380Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.842A>C
  hgvsp: ENSP00000421107.1:p.Asp281Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.710A>C
  hgvsp: ENSP00000423588.2:p.Asp237Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1034A>C
  hgvsp: ENSP00000391646.2:p.Asp345Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*684A>C
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3266
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5167
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3828
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp345Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD

http://identifiers.org/exac.variant/5-179147414-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147414
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147414
    reference: chr 5
allele count: 2
allele frequency: 1.647500741375333e-5
allele num: 121396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1035C>A
  hgvsp: ENSP00000391646.2:p.Asp345Glu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.843C>A
  hgvsp: ENSP00000421107.1:p.Asp281Glu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.711C>A
  hgvsp: ENSP00000423588.2:p.Asp237Glu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1140C>A
  hgvsp: ENSP00000394817.2:p.Asp380Glu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*685C>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1035C>A
  hgvsp: ENSP00000424063.1:p.Asp345Glu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1035C>A
  hgvsp: ENSP00000247461.4:p.Asp345Glu
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30814
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp345Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

5-179147422-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147422
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147422
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1043G>A
  hgvsp: ENSP00000424063.1:p.Gly348Glu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.719G>A
  hgvsp: ENSP00000423588.2:p.Gly240Glu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.851G>A
  hgvsp: ENSP00000421107.1:p.Gly284Glu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1043G>A
  hgvsp: ENSP00000391646.2:p.Gly348Glu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*693G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1043G>A
  hgvsp: ENSP00000247461.4:p.Gly348Glu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1148G>A
  hgvsp: ENSP00000394817.2:p.Gly383Glu
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9077
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly348Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

5-179147423-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147423
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147423
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1044A>T
  hgvsp: ENST00000247461.4:c.1044A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1044A>T
  hgvsp: ENST00000452673.2:c.1044A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1044A>T
  hgvsp: ENST00000504734.1:c.1044A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.852A>T
  hgvsp: ENST00000502673.1:c.852A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*694A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1149A>T
  hgvsp: ENST00000415618.2:c.1149A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.720A>T
  hgvsp: ENST00000512607.2:c.720A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30815
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly348Gly
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-179147424-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147424
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147423
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.855delA
  hgvsp: ENSP00000421107.1:p.Glu285AspfsTer?
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1047delA
  hgvsp: ENSP00000247461.4:p.Glu349AspfsTer25
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*697delA
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1047delA
  hgvsp: ENSP00000424063.1:p.Glu349AspfsTer25
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1152delA
  hgvsp: ENSP00000394817.2:p.Glu384AspfsTer25
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1047delA
  hgvsp: ENSP00000391646.2:p.Glu349AspfsTer25
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.723delA
  hgvsp: ENSP00000423588.2:p.Glu241AspfsTer25
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu349AspfsTer25
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: GA
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/5-179147431-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147431
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147431
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.728A>C
  hgvsp: ENSP00000423588.2:p.Glu243Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.860A>C
  hgvsp: ENSP00000421107.1:p.Glu287Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*702A>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1052A>C
  hgvsp: ENSP00000247461.4:p.Glu351Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1052A>C
  hgvsp: ENSP00000424063.1:p.Glu351Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1157A>C
  hgvsp: ENSP00000394817.2:p.Glu386Ala
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1052A>C
  hgvsp: ENSP00000391646.2:p.Glu351Ala
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30814
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4081
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3828
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu351Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

5-179147432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147432
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147432
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1053G>A
  hgvsp: ENST00000452673.2:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1053G>A
  hgvsp: ENST00000247461.4:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1053G>A
  hgvsp: ENST00000504734.1:c.1053G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.729G>A
  hgvsp: ENST00000512607.2:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.861G>A
  hgvsp: ENST00000502673.1:c.861G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*703G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1158G>A
  hgvsp: ENST00000415618.2:c.1158G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9394
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9347
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4081
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4092
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu351Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

5-179147442-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147442
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147442
    reference: chr 5
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.871A>G
  hgvsp: ENSP00000421107.1:p.Ile291Val
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1168A>G
  hgvsp: ENSP00000394817.2:p.Ile390Val
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1063A>G
  hgvsp: ENSP00000424063.1:p.Ile355Val
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1063A>G
  hgvsp: ENSP00000391646.2:p.Ile355Val
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*713A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.739A>G
  hgvsp: ENSP00000423588.2:p.Ile247Val
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1063A>G
  hgvsp: ENSP00000247461.4:p.Ile355Val
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30816
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3916
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9085
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3827
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile355Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ

5-179147466-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147466
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147466
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1087G>A
  hgvsp: ENSP00000247461.4:p.Ala363Thr
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1087G>A
  hgvsp: ENSP00000424063.1:p.Ala363Thr
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.895G>A
  hgvsp: ENSP00000421107.1:p.Ala299Thr
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1192G>A
  hgvsp: ENSP00000394817.2:p.Ala398Thr
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*737G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.763G>A
  hgvsp: ENSP00000423588.2:p.Ala255Thr
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1087G>A
  hgvsp: ENSP00000391646.2:p.Ala363Thr
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9085
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4092
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30817
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala363Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

5-179147471-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147471
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147471
    reference: chr 5
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*742T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1092T>G
  hgvsp: ENST00000247461.4:c.1092T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.900T>G
  hgvsp: ENST00000502673.1:c.900T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1092T>G
  hgvsp: ENST00000504734.1:c.1092T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.768T>G
  hgvsp: ENST00000512607.2:c.768T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1197T>G
  hgvsp: ENST00000415618.2:c.1197T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1092T>G
  hgvsp: ENST00000452673.2:c.1092T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2521
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro364Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP

5-179147481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147481
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147481
    reference: chr 5
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1207G>A
  hgvsp: ENSP00000394817.2:p.Val403Ile
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.910G>A
  hgvsp: ENSP00000421107.1:p.Val304Ile
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.778G>A
  hgvsp: ENSP00000423588.2:p.Val260Ile
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*752G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1102G>A
  hgvsp: ENSP00000424063.1:p.Val368Ile
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1102G>A
  hgvsp: ENSP00000247461.4:p.Val368Ile
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1102G>A
  hgvsp: ENSP00000391646.2:p.Val368Ile
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val368Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

5-179147491-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147491
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147491
    reference: chr 5
allele count: 3
allele frequency: 2.470925443942938e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1112G>A
  hgvsp: ENSP00000391646.2:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*762G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1112G>A
  hgvsp: ENSP00000424063.1:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.920G>A
  hgvsp: ENSP00000421107.1:p.Arg307Gln
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1217G>A
  hgvsp: ENSP00000394817.2:p.Arg406Gln
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.788G>A
  hgvsp: ENSP00000423588.2:p.Arg263Gln
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1112G>A
  hgvsp: ENSP00000247461.4:p.Arg371Gln
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9088
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg371Gln
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/5-179147493-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147493
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147493
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1114C>A
  hgvsp: ENSP00000391646.2:p.Pro372Thr
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*764C>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.790C>A
  hgvsp: ENSP00000423588.2:p.Pro264Thr
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1114C>A
  hgvsp: ENSP00000424063.1:p.Pro372Thr
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1114C>A
  hgvsp: ENSP00000247461.4:p.Pro372Thr
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1219C>A
  hgvsp: ENSP00000394817.2:p.Pro407Thr
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000421107
  ensembl transcript: ENST00000502673
  gene symbol: CANX
  hgvsc: ENST00000502673.1:c.922C>A
  hgvsp: ENSP00000421107.1:p.Pro308Thr
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro372Thr
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS

5-179147496-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147496
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147496
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1222G>A
  hgvsp: ENSP00000394817.2:p.Val408Met
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1117G>A
  hgvsp: ENSP00000391646.2:p.Val373Met
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1117G>A
  hgvsp: ENSP00000247461.4:p.Val373Met
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*767G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1117G>A
  hgvsp: ENSP00000424063.1:p.Val373Met
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.793G>A
  hgvsp: ENSP00000423588.2:p.Val265Met
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val373Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ

5-179147507-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147507
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147507
    reference: chr 5
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.804C>T
  hgvsp: ENST00000512607.2:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1128C>T
  hgvsp: ENST00000504734.1:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*778C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1128C>T
  hgvsp: ENST00000247461.4:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1233C>T
  hgvsp: ENST00000415618.2:c.1233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1128C>T
  hgvsp: ENST00000452673.2:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4081
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3915
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9084
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn376Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

5-179147509-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147509
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147509
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*780C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.806C>T
  hgvsp: ENSP00000423588.2:p.Pro269Leu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1130C>T
  hgvsp: ENSP00000391646.2:p.Pro377Leu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1235C>T
  hgvsp: ENSP00000394817.2:p.Pro412Leu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1130C>T
  hgvsp: ENSP00000247461.4:p.Pro377Leu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1130C>T
  hgvsp: ENSP00000424063.1:p.Pro377Leu
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30824
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9084
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2520
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro377Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum

5-179147525-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147525
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147525
    reference: chr 5
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*796A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1146A>G
  hgvsp: ENST00000452673.2:c.1146A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1251A>G
  hgvsp: ENST00000415618.2:c.1251A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.822A>G
  hgvsp: ENST00000512607.2:c.822A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1146A>G
  hgvsp: ENST00000247461.4:c.1146A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1146A>G
  hgvsp: ENST00000504734.1:c.1146A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10221
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
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genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3914
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genotype quality: GenotypeQuality
  all individuals: 0
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 3827
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys382Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

5-179147533-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147533
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147533
    reference: chr 5
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1154C>T
  hgvsp: ENSP00000247461.4:p.Pro385Leu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*804C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.830C>T
  hgvsp: ENSP00000423588.2:p.Pro277Leu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1154C>T
  hgvsp: ENSP00000424063.1:p.Pro385Leu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1154C>T
  hgvsp: ENSP00000391646.2:p.Pro385Leu
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1259C>T
  hgvsp: ENSP00000394817.2:p.Pro420Leu
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7336
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genotype depth: GenotypeDepth
  all individuals: 10220
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genotype depth: GenotypeDepth
  all individuals: 8153
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genotype depth: GenotypeDepth
  all individuals: 956
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  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9068
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3826
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genotype quality: GenotypeQuality
  all individuals: 2
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genotype quality: GenotypeQuality
  all individuals: 4081
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro385Leu
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-179147545-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147545
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147545
    reference: chr 5
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1166A>T
  hgvsp: ENSP00000391646.2:p.Asp389Val
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1166A>T
  hgvsp: ENSP00000247461.4:p.Asp389Val
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1166A>T
  hgvsp: ENSP00000424063.1:p.Asp389Val
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*816A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.842A>T
  hgvsp: ENSP00000423588.2:p.Asp281Val
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1271A>T
  hgvsp: ENSP00000394817.2:p.Asp424Val
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4091
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3907
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp389Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

5-179147551-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147551
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147551
    reference: chr 5
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1277C>G
  hgvsp: ENSP00000394817.2:p.Pro426Arg
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1172C>G
  hgvsp: ENSP00000247461.4:p.Pro391Arg
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1172C>G
  hgvsp: ENSP00000424063.1:p.Pro391Arg
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.848C>G
  hgvsp: ENSP00000423588.2:p.Pro283Arg
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*822C>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1172C>G
  hgvsp: ENSP00000391646.2:p.Pro391Arg
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30826
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro391Arg
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

5-179147552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147552
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147552
    reference: chr 5
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1173C>T
  hgvsp: ENST00000452673.2:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1278C>T
  hgvsp: ENST00000415618.2:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.849C>T
  hgvsp: ENST00000512607.2:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1173C>T
  hgvsp: ENST00000247461.4:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1173C>T
  hgvsp: ENST00000504734.1:c.1173C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*823C>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8110
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9013
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3828
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro391Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ

5-179147554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147554
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147554
    reference: chr 5
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1175G>A
  hgvsp: ENSP00000424063.1:p.Ser392Asn
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1280G>A
  hgvsp: ENSP00000394817.2:p.Ser427Asn
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1175G>A
  hgvsp: ENSP00000247461.4:p.Ser392Asn
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1175G>A
  hgvsp: ENSP00000391646.2:p.Ser392Asn
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*825G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.851G>A
  hgvsp: ENSP00000423588.2:p.Ser284Asn
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser392Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-179147554-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147554
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147554
    reference: chr 5
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1280G>T
  hgvsp: ENSP00000394817.2:p.Ser427Ile
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1175G>T
  hgvsp: ENSP00000391646.2:p.Ser392Ile
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1175G>T
  hgvsp: ENSP00000424063.1:p.Ser392Ile
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*825G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.851G>T
  hgvsp: ENSP00000423588.2:p.Ser284Ile
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1175G>T
  hgvsp: ENSP00000247461.4:p.Ser392Ile
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7336
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10214
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9008
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4090
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3898
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ser392Ile
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: QD

5-179147555-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147555
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147555
    reference: chr 5
allele count: 1
allele frequency: 8.240354664864776e-6
allele num: 121354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.852T>C
  hgvsp: ENST00000512607.2:c.852T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*826T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1176T>C
  hgvsp: ENST00000247461.4:c.1176T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1281T>C
  hgvsp: ENST00000415618.2:c.1281T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1176T>C
  hgvsp: ENST00000504734.1:c.1176T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1176T>C
  hgvsp: ENST00000452673.2:c.1176T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7335
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 954
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3826
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser392Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

5-179147564-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147564
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147564
    reference: chr 5
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1287+3T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.858+3T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1182+3T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*832+3T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1182+3T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1182+3T>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 955
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3887
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3822
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2518
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
hgvs: c.1182+3T>G
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD

5-179147568-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147568
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147568
    reference: chr 5
allele count: 3
allele frequency: 2.472799208704253e-5
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.858+7G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1182+7G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*832+7G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1182+7G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1182+7G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1287+7G>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5168
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7997
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9351
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4079
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3823
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8887
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1182+7G>A
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

5-179147579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147579
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147579
    reference: chr 5
allele count: 187
allele frequency: 1.542191726594973e-3
allele num: 121256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1182+18G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1182+18G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*832+18G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1182+18G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1287+18G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.858+18G>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.75e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5143
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7307
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4060
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 4
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: DP

5-179147587-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147587
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147587
    reference: chr 5
allele count: 2
allele frequency: 1.65000165000165e-5
allele num: 121212
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1182+26G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1182+26G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1287+26G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*832+26G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1182+26G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.858+26G>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9193
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3794
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4073
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

5-179147588-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147588
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147588
    reference: chr 5
allele count: 1
allele frequency: 8.252050634582693e-6
allele num: 121182
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.858+27C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*832+27C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1182+27C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1287+27C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1182+27C>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1182+27C>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9332
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4058
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7928
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
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genotype quality: GenotypeQuality
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

5-179147612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179147612
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179147612
    reference: chr 5
allele count: 1
allele frequency: 8.269520202437855e-6
allele num: 120926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*832+51G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1182+51G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1287+51G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1182+51G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1182+51G>A
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.858+51G>A
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6688
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7311
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
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  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9971
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 30
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3553
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 3774
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30894
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 386
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2319
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

5-179149755-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149755
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149755
    reference: chr 5
allele count: 1
allele frequency: 1.175696012039127e-5
allele num: 85056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-50T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-50T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-50T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-50T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-50T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-50T>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19510
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 230
  bin: 5.25e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 612
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4388
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2032
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 1574
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

5-179149757-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149757
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149757
    reference: chr 5
allele count: 3
allele frequency: 3.528415506210011e-5
allele num: 85024
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-48T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-48T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-48T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-48T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-48T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-48T>C
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 87
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 74
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 343
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genotype quality: GenotypeQuality
  all individuals: 8262
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 4345
  bin: 4.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 413
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
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site quality: QD

5-179149763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149763
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149763
    reference: chr 5
allele count: 1
allele frequency: 1.170275014628438e-5
allele num: 85450
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-42A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-42A>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 125
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 642
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  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-179149770-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149770
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149770
    reference: chr 5
allele count: 1
allele frequency: 1.152047187852814e-5
allele num: 86802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-35T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-35T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-35T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-35T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-35T>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-35T>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17280
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

5-179149772-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149772
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149772
    reference: chr 5
allele count: 2
allele frequency: 2.292421255329879e-5
allele num: 87244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-33T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-33T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-33T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-33T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-33T>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-33T>C
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3758
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15069
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2377
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4656
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2627
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 957
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-179149774-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149774
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149774
    reference: chr 5
allele count: 1
allele frequency: 1.13504801253093e-5
allele num: 88102
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-31A>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-31A>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-31A>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-31A>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-31A>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-31A>C
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15104
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6265
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

5-179149774-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149774
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149774
    reference: chr 5
allele count: 14
allele frequency: 1.589067217543302e-4
allele num: 88102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-31A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-31A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-31A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-31A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-31A>G
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-31A>G
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3638
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18506
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14530
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2571
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 822
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15104
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 3941
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
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genotype quality: GenotypeQuality
  all individuals: 760
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

5-179149776-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149776
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149776
    reference: chr 5
allele count: 1
allele frequency: 1.123620755522596e-5
allele num: 88998
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-29A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-29A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-29A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-29A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-29A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-29A>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2763
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3348
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15011
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-179149778-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149778
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149778
    reference: chr 5
allele count: 9
allele frequency: 1.00195938724617e-4
allele num: 89824
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-27G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-27G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-27G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-27G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-27G>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-27G>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22448
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 658
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3962
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20995
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14735
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4952
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

5-179149786-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149786
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149786
    reference: chr 5
allele count: 3
allele frequency: 3.108164111065064e-5
allele num: 96520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-19G>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-19G>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-19G>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-19G>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-19G>C
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-19G>C
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30303
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12069
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

5-179149789-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 179149789
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 179149789
    reference: chr 5
allele count: 1
allele frequency: 1.003351192984568e-5
allele num: 99666
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000427115
  ensembl transcript: ENST00000514032
  gene symbol: CANX
  hgvsc: ENST00000514032.1:c.*833-16A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000394817
  ensembl transcript: ENST00000415618
  gene symbol: CANX
  hgvsc: ENST00000415618.2:c.1288-16A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000424063
  ensembl transcript: ENST00000504734
  gene symbol: CANX
  hgvsc: ENST00000504734.1:c.1183-16A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000391646
  ensembl transcript: ENST00000452673
  gene symbol: CANX
  hgvsc: ENST00000452673.2:c.1183-16A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000423588
  ensembl transcript: ENST00000512607
  gene symbol: CANX
  hgvsc: ENST00000512607.2:c.859-16A>T
  variant of: http://identifiers.org/hgnc/1473
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000127022
  ensembl protein: ENSP00000247461
  ensembl transcript: ENST00000247461
  gene symbol: CANX
  hgvsc: ENST00000247461.4:c.1183-16A>T
  variant of: http://identifiers.org/hgnc/1473
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32789
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2052
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31509
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10769
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

GenotypeQuality
all individuals: 161
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2656
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.993620414673046e-5
allele num: 50160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7940
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.128e0

DP
type: SiteQuality
SIO_000300: 1.114011e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.52e-1

QD
type: SiteQuality
SIO_000300: 8.4e0

GenotypeQuality
all individuals: 2489
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 691
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14126
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1650
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4930
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.0791749833666e-5
allele num: 48096
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.353e0

MQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.178e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.1e-3

DP
type: SiteQuality
SIO_000300: 1.05535e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.19e-1

GenotypeQuality
all individuals: 457
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33289
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10546
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45972
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7702
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.600512163892446e-4
allele num: 6248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7082
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.97954e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

QD
type: SiteQuality
SIO_000300: 1.505e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1553
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8149
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.363730912872879e-5
allele num: 42306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 2.442e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 9.41616e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

QD
type: SiteQuality
SIO_000300: 1.325e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.78e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 4

GenotypeQuality
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bin: 2.25e1
variant carriers: 8

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1648
bin: 9.75e1
variant carriers: 116

GenotypeQuality
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bin: 7.75e1
variant carriers: 4

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.568381430363865e-3
allele num: 3188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2768
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 5.950019833399445e-4
allele num: 5042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 99
allele frequency: 3.846751631955238e-3
allele num: 25736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.46e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

DP
type: SiteQuality
SIO_000300: 7.73394e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.99e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.406e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.88e-1

QD
type: SiteQuality
SIO_000300: 1.423e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1568
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1663
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 8.366800535475234e-5
allele num: 23904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9354
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2990
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.098e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.78e-2

DP
type: SiteQuality
SIO_000300: 7.59003e5

MQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 13962
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3030
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.568296025582458e-4
allele num: 4378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2042
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.501e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.01e-2

FS
type: SiteQuality
SIO_000300: 6.797e0

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

QD
type: SiteQuality
SIO_000300: 1.25e0

DP
type: SiteQuality
SIO_000300: 7.42036e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeQuality
all individuals: 2299
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1938
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 187
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variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4378
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 6.797e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.501e-1

DP
type: SiteQuality
SIO_000300: 7.42036e5

GenotypeQuality
all individuals: 961
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2347
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2440
bin: 2.5e0
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GenotypeQuality
all individuals: 423
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variant carriers: 3

GenotypeQuality
all individuals: 526
bin: 4.75e1
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GenotypeQuality
all individuals: 186
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
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variant carriers: 4

GenotypeQuality
all individuals: 149
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variant carriers: 0

GenotypeQuality
all individuals: 424
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variant carriers: 2

GenotypeQuality
all individuals: 1558
bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1410
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.874665238350295e-3
allele num: 3734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2344
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.757715338553662e-5
allele num: 17368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 7.09492e5

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.92e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

QD
type: SiteQuality
SIO_000300: 2.44e0

GenotypeQuality
all individuals: 8563
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 148
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variant carriers: 0

GenotypeQuality
all individuals: 1007
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GenotypeQuality
all individuals: 306
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GenotypeQuality
all individuals: 175
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GenotypeQuality
all individuals: 452
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GenotypeQuality
all individuals: 1542
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 937
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variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2060
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2056
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 2.396644697423607e-3
allele num: 3338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1292
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.4e0

FS
type: SiteQuality
SIO_000300: 9.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.243e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

DP
type: SiteQuality
SIO_000300: 7.04584e5

GenotypeQuality
all individuals: 175
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 937
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3316
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22315
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variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 3

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 8563
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 387
bin: 7.25e1
variant carriers: 2

Latino
type: Population
allele count: 2
allele frequency: 1.547987616099071e-3
allele num: 1292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.242976651267325e-5
allele num: 16018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

African
type: Population
allele count: 42
allele frequency: 1.258238466147394e-2
allele num: 3338
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.19e-1

FS
type: SiteQuality
SIO_000300: 9.98e-1

MQ
type: SiteQuality
SIO_000300: 5.887e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.243e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.63e-1

DP
type: SiteQuality
SIO_000300: 7.04584e5

QD
type: SiteQuality
SIO_000300: 6.4e0

GenotypeQuality
all individuals: 1422
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21835
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GenotypeQuality
all individuals: 317
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GenotypeQuality
all individuals: 701
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GenotypeQuality
all individuals: 5962
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
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GenotypeQuality
all individuals: 1385
bin: 6.25e1
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GenotypeQuality
all individuals: 1084
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GenotypeQuality
all individuals: 401
bin: 7.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 6.176652254478073e-4
allele num: 3238
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1024
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.3562e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e-2

QD
type: SiteQuality
SIO_000300: 1.097e1

DP
type: SiteQuality
SIO_000300: 6.985e5

VQSLOD
type: SiteQuality
SIO_000300: -8.442e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.58e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

GenotypeQuality
all individuals: 4088
bin: 1.25e1
variant carriers: 98

GenotypeQuality
all individuals: 532
bin: 4.25e1
variant carriers: 259

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 243

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 108

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 80

GenotypeQuality
all individuals: 778
bin: 3.25e1
variant carriers: 196

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 64

GenotypeQuality
all individuals: 295
bin: 6.75e1
variant carriers: 109

GenotypeQuality
all individuals: 1133
bin: 9.75e1
variant carriers: 428

GenotypeQuality
all individuals: 835
bin: 2.75e1
variant carriers: 159

Latino
type: Population
allele count: 46
allele frequency: 1.004366812227074e-1
allele num: 458
num of homozygotes: 0

African
type: Population
allele count: 186
allele frequency: 9.08203125e-2
allele num: 2048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 728
allele frequency: 9.393548387096774e-2
allele num: 7750
num of homozygotes: 0

South Asian
type: Population
allele count: 1326
allele frequency: 3.083720930232558e-1
allele num: 4300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.195652173913044e-2
allele num: 920
num of homozygotes: 0

East Asian
type: Population
allele count: 70
allele frequency: 8.274231678486997e-2
allele num: 846
num of homozygotes: 0

Other
type: Population
allele count: 35
allele frequency: 1.988636363636364e-1
allele num: 176
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.26713e5

QD
type: SiteQuality
SIO_000300: 2.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.869e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

GenotypeQuality
all individuals: 204
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variant carriers: 0

GenotypeQuality
all individuals: 14195
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variant carriers: 3

GenotypeQuality
all individuals: 295
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variant carriers: 5

GenotypeQuality
all individuals: 25542
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 395
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GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 4.25e1
variant carriers: 4

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1133
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 614
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 9
allele frequency: 2.093023255813954e-3
allele num: 4300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.8828125e-4
allele num: 2048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 7.741935483870968e-4
allele num: 7750
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.364066193853428e-3
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.366812227074236e-3
allele num: 458
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.869e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

DP
type: SiteQuality
SIO_000300: 6.26713e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

QD
type: SiteQuality
SIO_000300: 2.1e0

Latino
type: Population
allele count: 5
allele frequency: 1.091703056768559e-2
allele num: 458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.869e-1

DP
type: SiteQuality
SIO_000300: 6.26713e5

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 24

GenotypeQuality
all individuals: 108
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 525
bin: 6.25e1
variant carriers: 34

GenotypeQuality
all individuals: 778
bin: 3.25e1
variant carriers: 68

GenotypeQuality
all individuals: 395
bin: 5.25e1
variant carriers: 42

GenotypeQuality
all individuals: 462
bin: 4.75e1
variant carriers: 45

GenotypeQuality
all individuals: 2660
bin: 1.75e1
variant carriers: 50

GenotypeQuality
all individuals: 3222
bin: 2.25e1
variant carriers: 56

GenotypeQuality
all individuals: 130
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 204
bin: 7.25e1
variant carriers: 17

East Asian
type: Population
allele count: 47
allele frequency: 5.555555555555555e-2
allele num: 846
num of homozygotes: 0

African
type: Population
allele count: 45
allele frequency: 2.197265625e-2
allele num: 2048
num of homozygotes: 0

Latino
type: Population
allele count: 15
allele frequency: 3.275109170305677e-2
allele num: 458
num of homozygotes: 0

South Asian
type: Population
allele count: 245
allele frequency: 5.697674418604651e-2
allele num: 4300
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 4.545454545454546e-2
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 4.347826086956522e-3
allele num: 920
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 632
allele frequency: 8.15483870967742e-2
allele num: 7750
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 2.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.869e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

DP
type: SiteQuality
SIO_000300: 6.26713e5

GenotypeQuality
all individuals: 343
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26532
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4412
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 7.27802037845706e-4
allele num: 1374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.964954201513341e-4
allele num: 5022
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.069e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.931e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

QD
type: SiteQuality
SIO_000300: 6.24e0

DP
type: SiteQuality
SIO_000300: 5.72427e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.534e-1

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1508
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19229
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 858
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1664
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.439884809215263e-4
allele num: 13890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.56e-1

QD
type: SiteQuality
SIO_000300: 1.35e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

DP
type: SiteQuality
SIO_000300: 6.58609e5

GenotypeQuality
all individuals: 375
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7785
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18799
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5211
bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 948
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3190
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 6.281407035175879e-4
allele num: 1592
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.579e1

VQSLOD
type: SiteQuality
SIO_000300: -2.274e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.63e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.164e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.396e0

FS
type: SiteQuality
SIO_000300: 7.194e0

DP
type: SiteQuality
SIO_000300: 6.58295e5

MQ
type: SiteQuality
SIO_000300: 4.655e1

GenotypeQuality
all individuals: 358
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 558
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2295
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30591
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3769
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.340407e6

QD
type: SiteQuality
SIO_000300: 1.208e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

GenotypeQuality
all individuals: 6122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3913
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.699711260827719e-4
allele num: 10390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

DP
type: SiteQuality
SIO_000300: 2.349702e6

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 4.62e0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 1.434e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

GenotypeQuality
all individuals: 356
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2458
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3971
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6760
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.137228427642077e-5
allele num: 16294
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.057e1

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQRankSum
type: SiteQuality
SIO_000300: 9.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.213e0

DP
type: SiteQuality
SIO_000300: 2.356534e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2478
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7323
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
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variant carriers: 0

GenotypeQuality
all individuals: 4000
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4025
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.341e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.583e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 9.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.436e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQRankSum
type: SiteQuality
SIO_000300: -2.9e-2

QD
type: SiteQuality
SIO_000300: 1.381e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.364442e6

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7563
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2488
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30722
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4030
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.730702665282105e-4
allele num: 11556
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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SIO_000300: 1.04e0

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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MQ
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SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 1.158211721102618e-4
allele num: 8634
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66556
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQ
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.37312e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.051745898190997e-4
allele num: 66556
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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InbreedingCoeff
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FS
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.985e1

ClippingRankSum
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SIO_000300: -1.147e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11568
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66604
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East Asian
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Other
type: Population
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African
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allele count: 13
allele frequency: 1.25e-3
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
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QD
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FS
type: SiteQuality
SIO_000300: 8.19e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.380159e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele frequency: 3.042472921990994e-4
allele num: 16434
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

Other
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allele num: 908
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.61e-1

QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -4.492e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.29e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.2e-1

DP
type: SiteQuality
SIO_000300: 2.383739e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 9.615384615384615e-5
allele num: 10400
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South Asian
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allele num: 16458
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Latino
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allele count: 6
allele frequency: 5.185825410544512e-4
allele num: 11570
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East Asian
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allele count: 2
allele frequency: 2.311604253351826e-4
allele num: 8652
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European (Non-Finnish)
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allele count: 86
allele frequency: 1.290167721803834e-3
allele num: 66658
num of homozygotes: 2

Other
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ClippingRankSum
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VQSLOD
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.46e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 66698
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East Asian
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African
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Latino
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South Asian
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Other
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European (Finnish)
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FS
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MQ
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DP
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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Latino
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Other
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European (Finnish)
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South Asian
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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MQ
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QD
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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Other
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South Asian
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BaseQRankSum
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QD
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Latino
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African
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South Asian
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Other
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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VQSLOD
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DP
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SIO_000300: 2.389922e6

ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

African
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Other
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QD
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BaseQRankSum
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ClippingRankSum
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MQ
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DP
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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SIO_000300: -8.139999999999999e-1

VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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FS
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MQ
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MQRankSum
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DP
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QD
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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Latino
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East Asian
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African
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South Asian
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Other
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European (Non-Finnish)
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allele frequency: 1.498486528606108e-5
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num of homozygotes: 0

ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Latino
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East Asian
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European (Finnish)
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Other
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DP
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QD
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ClippingRankSum
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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Latino
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European (Non-Finnish)
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num of homozygotes: 0

InbreedingCoeff
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FS
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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East Asian
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South Asian
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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MQ
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FS
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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East Asian
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European (Finnish)
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Latino
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South Asian
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African
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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Other
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South Asian
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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MQRankSum
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FS
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 9.609840476648087e-5
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ReadPosRankSum
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SIO_000300: 7.55e-1

BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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SIO_000300: 5.958e1

ClippingRankSum
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SIO_000300: -1.509e0

DP
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QD
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66740
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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DP
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VQSLOD
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MQRankSum
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QD
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MQ
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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FS
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QD
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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ReadPosRankSum
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VQSLOD
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Latino
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African
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Other
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East Asian
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allele frequency: 0.0e0
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South Asian
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InbreedingCoeff
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FS
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MQ
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SIO_000300: 5.978e1

ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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African
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele num: 11578
num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
SIO_000300: 7.89e-1

InbreedingCoeff
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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FS
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MQ
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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African
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South Asian
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European (Non-Finnish)
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allele num: 66740
num of homozygotes: 0

East Asian
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ClippingRankSum
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SIO_000300: 3.8e-1

MQRankSum
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
SIO_000300: 7.51e-1

InbreedingCoeff
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DP
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MQ
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 5.993946114424431e-5
allele num: 66734
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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DP
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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Latino
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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FS
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DP
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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allele num: 66698
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South Asian
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ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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MQ
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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African
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Latino
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European (Finnish)
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VQSLOD
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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MQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.737e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

DP
type: SiteQuality
SIO_000300: 2.3912e6

InbreedingCoeff
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SIO_000300: 1.71e-2

QD
type: SiteQuality
SIO_000300: 1.09e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2360
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GenotypeQuality
all individuals: 30827
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.19e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.71e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.737e0

DP
type: SiteQuality
SIO_000300: 2.3912e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.01e-1

QD
type: SiteQuality
SIO_000300: 1.09e1

GenotypeQuality
all individuals: 8993
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.716e1

FS
type: SiteQuality
SIO_000300: 2.785e0

QD
type: SiteQuality
SIO_000300: 1.716e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.528e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-1

DP
type: SiteQuality
SIO_000300: 2.390947e6

GenotypeQuality
all individuals: 4079
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.23e-1

DP
type: SiteQuality
SIO_000300: 2.39004e6

FS
type: SiteQuality
SIO_000300: 5.88e-1

QD
type: SiteQuality
SIO_000300: 1.448e1

MQ
type: SiteQuality
SIO_000300: 5.985e1

VQSLOD
type: SiteQuality
SIO_000300: 3.53e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

South Asian
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allele count: 1
allele frequency: 6.065752759917505e-5
allele num: 16486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31107002542177e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66676
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.35e-2

DP
type: SiteQuality
SIO_000300: 2.390127e6

MQRankSum
type: SiteQuality
SIO_000300: -5.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.489e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 1.341e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: -5.223e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 183

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 183
allele frequency: 2.115117891816921e-2
allele num: 8652
num of homozygotes: 4

South Asian
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allele count: 2
allele frequency: 1.216249087813184e-4
allele num: 16444
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.000390050706592e-5
allele num: 66658
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.234e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.0e-2

FS
type: SiteQuality
SIO_000300: 1.349e0

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.278e1

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500600240096038e-5
allele num: 66640
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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BaseQRankSum
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DP
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ClippingRankSum
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SIO_000300: -4.6e-2

InbreedingCoeff
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.50073536032656e-5
allele num: 66634
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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Other
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South Asian
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Latino
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
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BaseQRankSum
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MQRankSum
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DP
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InbreedingCoeff
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QD
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VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502358703163967e-5
allele num: 66562
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
type: Population
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South Asian
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e0

FS
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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MQRankSum
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DP
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ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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Latino
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South Asian
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Other
type: Population
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African
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.224793094242236e-5
allele num: 44948
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BaseQRankSum
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InbreedingCoeff
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DP
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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ClippingRankSum
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6948
num of homozygotes: 0

African
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South Asian
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allele frequency: 1.510345869204048e-4
allele num: 13242
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 44962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.676164934629568e-4
allele num: 5966
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 9.42377e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 9.470000000000001e0

GenotypeQuality
all individuals: 1059
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2609
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.297690111601349e-4
allele num: 7706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6004
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -1.284e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.67848e5

QD
type: SiteQuality
SIO_000300: 8.83e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.86e-1

GenotypeQuality
all individuals: 7440
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4968
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 362
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45984
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.281394156842645e-4
allele num: 7804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13454
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7174
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.01909e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.826e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.787e-1

GenotypeQuality
all individuals: 6933
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14954
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1345
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4806
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46226
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7218
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.479946721918011e-4
allele num: 13514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.78e-1

QD
type: SiteQuality
SIO_000300: 1.241e1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

DP
type: SiteQuality
SIO_000300: 1.042763e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

GenotypeQuality
all individuals: 2642
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3941
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4538
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2571
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.139952921035737e-5
allele num: 46730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.069891e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 413
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4538
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6265
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 9
allele frequency: 1.140395337050177e-3
allele num: 7892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6200
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 5.451076587626056e-4
allele num: 7338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46730
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.41643059490085e-3
allele num: 706
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

QD
type: SiteQuality
SIO_000300: 1.372e1

DP
type: SiteQuality
SIO_000300: 1.069891e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.28e0

MQRankSum
type: SiteQuality
SIO_000300: -2.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.58e-1

GenotypeQuality
all individuals: 318
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4283
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5665
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2633
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5662
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.316359379572725e-5
allele num: 13668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6270
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.771e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.09326e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.286e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.503e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

QD
type: SiteQuality
SIO_000300: 1.67e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.19e-1

GenotypeQuality
all individuals: 493
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.450957632037145e-4
allele num: 13784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5708
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 8.73689465801298e-4
allele num: 8012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.811e0

FS
type: SiteQuality
SIO_000300: 1.72e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -5.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

QD
type: SiteQuality
SIO_000300: 1.424e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

DP
type: SiteQuality
SIO_000300: 1.121363e6

GenotypeQuality
all individuals: 422
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2489
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3775
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 922
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1135
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5978
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.825921466578631e-5
allele num: 51494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6840
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.635e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.63e-1

FS
type: SiteQuality
SIO_000300: 9.069000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.165e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.734e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.107e0

DP
type: SiteQuality
SIO_000300: 1.241398e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

GenotypeQuality
all individuals: 70
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4151
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2667
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 907
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.76223965377333e-5
allele num: 14788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6078
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.909e0

MQRankSum
type: SiteQuality
SIO_000300: -5.669999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.281041e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.71e-1